Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47298 * 2 1 4 4 H 1.08996 * 109.46943 * 55.37172 * 3 2 1 5 5 C 1.52995 * 109.47025 * 175.37220 * 3 2 1 6 6 N 1.46499 * 109.47021 * 174.99473 * 5 3 2 7 7 C 1.34780 * 120.00032 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99735 * 359.72218 * 7 6 5 9 9 C 1.50703 * 120.00017 * 179.72830 * 7 6 5 10 10 S 1.81003 * 109.47045 * 179.97438 * 9 7 6 11 11 C 1.76196 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00224 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99807 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00204 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00104 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46989 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47404 * 119.99608 * 15 13 11 18 18 H 1.48503 * 109.46751 * 239.99791 * 15 13 11 19 19 N 1.46903 * 109.46593 * 295.37134 * 3 2 1 20 20 C 1.46903 * 111.00059 * 302.88839 * 19 3 2 21 21 C 1.50702 * 109.46939 * 185.64074 * 20 19 3 22 22 O 1.21282 * 119.99960 * 359.97438 * 21 20 19 23 23 N 1.34774 * 119.99591 * 179.97438 * 21 20 19 24 24 C 1.47068 * 136.06060 * 359.62809 * 23 21 20 25 25 C 1.53242 * 88.08376 * 207.20107 * 24 23 21 26 26 C 1.47069 * 136.05194 * 179.97438 * 23 21 20 27 27 H 1.09001 * 109.47377 * 178.73340 * 1 2 3 28 28 H 1.08997 * 109.47544 * 298.73887 * 1 2 3 29 29 H 1.09005 * 109.46952 * 58.73362 * 1 2 3 30 30 H 1.08995 * 109.47185 * 239.99432 * 2 1 3 31 31 H 1.09003 * 109.46577 * 119.99484 * 2 1 3 32 32 H 1.09006 * 109.47049 * 54.99734 * 5 3 2 33 33 H 1.08999 * 109.47580 * 294.99971 * 5 3 2 34 34 H 0.97003 * 119.99950 * 359.72783 * 6 5 3 35 35 H 1.08995 * 109.46677 * 300.00146 * 9 7 6 36 36 H 1.09000 * 109.46885 * 60.00205 * 9 7 6 37 37 H 0.96993 * 120.00493 * 180.02562 * 14 13 11 38 38 H 1.00893 * 111.00416 * 66.84436 * 19 3 2 39 39 H 1.09002 * 109.46904 * 305.63456 * 20 19 3 40 40 H 1.08998 * 109.47098 * 65.63604 * 20 19 3 41 41 H 1.08997 * 113.46415 * 321.93650 * 24 23 21 42 42 H 1.08999 * 113.46703 * 92.37383 * 24 23 21 43 43 H 1.08991 * 114.32679 * 220.46739 * 25 24 23 44 44 H 1.09001 * 114.01370 * 87.71666 * 25 24 23 45 45 H 1.09003 * 113.46739 * 267.61800 * 26 23 21 46 46 H 1.08991 * 113.47274 * 38.06712 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5656 1.4440 0.1164 6 7 4.0631 2.8167 -0.0036 7 6 5.3863 3.0626 0.0687 8 8 6.1647 2.1481 0.2381 9 6 5.8986 4.4740 -0.0609 10 16 7.7032 4.4760 0.0784 11 6 8.0222 6.1992 -0.1043 12 1 7.2030 6.8875 -0.2508 13 6 9.3265 6.6719 -0.0609 14 7 10.3251 5.8329 0.1172 15 14 9.6648 8.4989 -0.2538 16 1 8.3816 9.2229 -0.4395 17 1 10.3486 9.0068 0.9625 18 1 10.5329 8.7191 -1.4383 19 7 1.6437 2.1019 -1.2515 20 6 2.1484 1.3648 -2.4177 21 6 1.8431 2.1408 -3.6730 22 8 1.2619 3.2030 -3.6030 23 7 2.2160 1.6543 -4.8733 24 6 2.9165 0.4559 -5.3590 25 6 3.3739 1.2767 -6.5695 26 6 2.1068 2.0914 -6.2732 27 1 -0.3634 -1.0274 -0.0227 28 1 -0.3634 0.4941 0.9010 29 1 -0.3633 0.5334 -0.8785 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.9912 0.8324 -0.6792 33 1 3.8566 1.0353 1.0840 34 1 3.4405 3.5481 -0.1394 35 1 5.6081 4.8783 -1.0305 36 1 5.4727 5.0892 0.7317 37 1 11.2365 6.1633 0.1479 38 1 0.6421 2.2135 -1.3000 39 1 3.2264 1.2328 -2.3253 40 1 1.6657 0.3888 -2.4673 41 1 3.7372 0.1416 -4.7143 42 1 2.2461 -0.3635 -5.6184 43 1 3.3463 0.7356 -7.5152 44 1 4.3039 1.8223 -6.4097 45 1 1.2187 1.7117 -6.7785 46 1 2.2405 3.1651 -6.4045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698589711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -32.470216 kcal Electronic energy + Delta-G solvation = -25872.657295 eV Core-core repulsion = 22118.007028 eV Total energy + Delta-G solvation = -3754.650267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60925 -39.44377 -38.39023 -37.40905 -33.84454 -32.43841 -32.37511 -30.52249 -29.90131 -27.98771 -26.73548 -25.91411 -25.41301 -23.45538 -22.50517 -20.43346 -19.96746 -19.31267 -17.84702 -17.75296 -16.86886 -16.54213 -16.14790 -15.84524 -15.64753 -15.33563 -14.80941 -14.75486 -14.46224 -14.32071 -13.85477 -13.73417 -13.38304 -13.15659 -13.03090 -12.91918 -12.76783 -12.52352 -12.48102 -12.29128 -11.88885 -11.79635 -11.56146 -11.31418 -11.14845 -11.07632 -11.02572 -10.95908 -10.70203 -9.99358 -9.74554 -9.30647 -9.02768 -9.02547 -8.80209 -8.69109 -8.16542 -6.43476 -6.16784 -3.86268 2.40322 2.46529 3.12455 3.21724 3.25509 3.32364 3.38585 3.70379 3.89753 3.99133 4.22616 4.25920 4.41349 4.56035 4.59191 4.63755 4.76251 4.90579 4.96486 4.98561 5.03660 5.08694 5.15637 5.18440 5.26091 5.27767 5.32708 5.35998 5.44400 5.50798 5.56353 5.62480 5.73854 5.77050 5.83554 5.89180 6.01380 6.26585 6.51456 6.79779 6.99323 7.43071 7.65739 7.92041 7.96212 8.41314 8.75067 9.28935 10.90740 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.002878 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.307622 B = 9726.950376 C =11326.369006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.076 3.924 4 H 0.097 0.903 5 C 0.129 3.871 6 N -0.726 5.726 7 C 0.531 3.469 8 O -0.526 6.526 9 C -0.152 4.152 10 S -0.062 6.062 11 C -0.533 4.533 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.869 5.869 15 Si 0.918 3.082 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.662 5.662 20 C 0.042 3.958 21 C 0.542 3.458 22 O -0.523 6.523 23 N -0.654 5.654 24 C 0.097 3.903 25 C -0.156 4.156 26 C 0.103 3.897 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.267 0.733 38 H 0.352 0.648 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.007 -14.897 -9.122 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.034 4.034 4 H 0.115 0.885 5 C 0.004 3.996 6 N -0.381 5.381 7 C 0.317 3.683 8 O -0.401 6.401 9 C -0.302 4.302 10 S 0.164 5.836 11 C -0.681 4.681 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.504 5.504 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.294 5.294 20 C -0.091 4.091 21 C 0.332 3.668 22 O -0.398 6.398 23 N -0.392 5.392 24 C -0.026 4.026 25 C -0.194 4.194 26 C -0.019 4.019 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.242 0.758 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.172 0.828 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.398 -15.313 -8.523 26.893 hybrid contribution -1.571 1.646 -0.447 2.319 sum -21.969 -13.666 -8.970 27.384 Atomic orbital electron populations 1.21772 0.95296 1.02030 1.01973 1.22215 0.96567 0.97850 1.03357 1.21967 0.95332 0.93360 0.92774 0.88476 1.21282 0.91549 0.84924 1.01868 1.45844 1.07512 1.09026 1.75708 1.20298 0.81590 0.90999 0.75454 1.90683 1.55654 1.46182 1.47607 1.23513 1.06398 0.95427 1.04902 1.85319 0.92322 1.10987 1.94954 1.22930 0.95396 0.92579 1.57203 0.90887 1.24988 0.95079 0.98904 0.94652 1.70031 0.99353 1.34431 1.46617 0.86123 0.78417 0.83109 0.77901 1.19584 1.20595 1.20614 1.60159 1.19267 1.50265 0.99751 1.21798 1.03241 0.95150 0.88862 1.20201 0.77827 0.85946 0.82857 1.90727 1.40955 1.22265 1.85829 1.49679 1.59608 1.24530 1.05396 1.22977 0.95736 0.89467 0.94468 1.23366 0.98660 0.98865 0.98514 1.22925 0.97637 1.01265 0.80102 0.92359 0.92151 0.93023 0.91418 0.90578 0.92130 0.91116 0.75797 0.89300 0.89300 0.92321 0.82781 0.87548 0.92008 0.90121 0.89697 0.89079 0.88361 0.89946 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.70 37.16 0.36 -0.49 16 2 C -0.16 -1.02 5.10 -26.73 -0.14 -1.15 16 3 C 0.08 0.62 2.70 -67.71 -0.18 0.44 16 4 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 5 C 0.13 1.48 4.76 -4.04 -0.02 1.46 16 6 N -0.73 -10.45 5.39 -60.29 -0.32 -10.78 16 7 C 0.53 10.36 7.85 -10.98 -0.09 10.28 16 8 O -0.53 -12.17 15.86 5.55 0.09 -12.09 16 9 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 10 S -0.06 -1.74 20.57 -107.50 -2.21 -3.96 16 11 C -0.53 -15.61 9.50 30.94 0.29 -15.32 16 12 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.61 13.22 55.49 0.73 -25.88 16 15 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 N -0.66 -6.19 5.31 -107.99 -0.57 -6.76 16 20 C 0.04 0.39 5.14 -4.97 -0.03 0.36 16 21 C 0.54 6.50 8.13 -10.99 -0.09 6.41 16 22 O -0.52 -8.32 17.10 5.56 0.09 -8.22 16 23 N -0.65 -6.23 3.69 -185.38 -0.68 -6.91 16 24 C 0.10 0.57 8.40 -8.63 -0.07 0.50 16 25 C -0.16 -0.85 8.48 -26.34 -0.22 -1.08 16 26 C 0.10 0.78 8.61 -8.48 -0.07 0.70 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.30 6.87 -51.93 -0.36 -0.06 16 30 H 0.07 0.42 6.23 -51.93 -0.32 0.10 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.73 6.61 -51.93 -0.34 0.39 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.41 5.35 8.13 -40.82 -0.33 5.02 16 35 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 36 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.35 3.13 7.28 -39.30 -0.29 2.85 16 39 H 0.11 1.10 6.22 -51.93 -0.32 0.77 16 40 H 0.06 0.44 6.48 -51.93 -0.34 0.10 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -37.71 391.84 -9.47 -47.18 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.34 Total: 3.51 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.13 Total: 1.10 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.85 Total: -50.33 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.18 Total: -20.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.71 -9.47 -47.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698589711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.710 kcal (2) G-P(sol) polarization free energy of solvation -37.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds