Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48496 * 109.47210 * 240.00180 * 3 2 1 5 5 H 1.48498 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46991 * 120.00191 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99527 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99610 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00466 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00241 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47335 * 35.00271 * 14 13 11 16 16 C 1.53005 * 109.47139 * 275.00137 * 14 13 11 17 17 C 1.53000 * 109.47170 * 300.00009 * 16 14 13 18 18 C 1.52998 * 109.47150 * 299.99906 * 17 16 14 19 19 C 1.53005 * 109.47007 * 59.99994 * 18 17 16 20 20 C 1.52998 * 109.47169 * 155.00239 * 14 13 11 21 21 H 1.09001 * 109.47089 * 179.97438 * 20 14 13 22 22 C 1.52995 * 109.47344 * 300.00178 * 20 14 13 23 23 N 1.46899 * 109.47420 * 185.00017 * 22 20 14 24 24 C 1.46899 * 111.00254 * 179.97438 * 23 22 20 25 25 C 1.50696 * 109.47472 * 180.02562 * 24 23 22 26 26 N 1.34770 * 120.00194 * 180.02562 * 25 24 23 27 27 O 1.21283 * 119.99529 * 359.97438 * 25 24 23 28 28 H 0.97006 * 120.00587 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47116 * 299.99719 * 10 9 7 30 30 H 1.09004 * 109.47713 * 59.99835 * 10 9 7 31 31 H 0.97003 * 120.00227 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.46986 * 59.99958 * 16 14 13 33 33 H 1.09001 * 109.46814 * 179.97438 * 16 14 13 34 34 H 1.09002 * 109.47133 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.46979 * 59.99794 * 17 16 14 36 36 H 1.09001 * 109.47089 * 299.99821 * 18 17 16 37 37 H 1.08994 * 109.47080 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.46986 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.46860 * 60.00553 * 19 18 17 40 40 H 1.09004 * 109.47141 * 305.00096 * 22 20 14 41 41 H 1.09000 * 109.47508 * 65.00005 * 22 20 14 42 42 H 1.00906 * 110.99916 * 56.04482 * 23 22 20 43 43 H 1.09003 * 109.47004 * 300.00291 * 24 23 22 44 44 H 1.09003 * 109.47069 * 59.99449 * 24 23 22 45 45 H 0.97002 * 120.00171 * 359.97438 * 26 25 24 46 46 H 0.97010 * 120.00314 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5022 -0.0038 13 7 2.8442 -6.3430 -0.0049 14 6 2.3305 -7.7150 -0.0050 15 1 1.4142 -7.7599 -0.5935 16 6 2.0354 -8.1491 1.4322 17 6 3.3217 -8.0862 2.2583 18 6 4.3666 -9.0220 1.6473 19 6 4.6617 -8.5878 0.2101 20 6 3.3754 -8.6508 -0.6160 21 1 2.9934 -9.6716 -0.6156 22 6 3.6706 -8.2167 -2.0531 23 7 4.5823 -9.1835 -2.6792 24 6 4.8882 -8.7984 -4.0635 25 6 5.8233 -9.8116 -4.6718 26 7 6.2436 -9.6625 -5.9436 27 8 6.1983 -10.7608 -4.0165 28 1 -0.4851 0.8400 0.0004 29 1 3.1245 -3.7304 -0.8928 30 1 3.1246 -3.7320 0.8872 31 1 3.8010 -6.1834 -0.0051 32 1 1.2910 -7.4824 1.8676 33 1 1.6528 -9.1698 1.4321 34 1 3.1114 -8.3951 3.2823 35 1 3.7039 -7.0654 2.2583 36 1 3.9844 -10.0428 1.6473 37 1 5.2827 -8.9775 2.2360 38 1 5.4057 -9.2548 -0.2254 39 1 5.0439 -7.5671 0.2102 40 1 2.7397 -8.1760 -2.6188 41 1 4.1352 -7.2307 -2.0467 42 1 4.2019 -10.1173 -2.6396 43 1 3.9656 -8.7621 -4.6428 44 1 5.3610 -7.8163 -4.0714 45 1 5.9439 -8.9031 -6.4675 46 1 6.8458 -10.3145 -6.3351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699477032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -96.298371 kcal Electronic energy + Delta-G solvation = -25926.470700 eV Core-core repulsion = 22169.052636 eV Total energy + Delta-G solvation = -3757.418063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30996 -39.73709 -38.00433 -35.83201 -34.04121 -33.47302 -32.43093 -31.57807 -30.51544 -28.53418 -27.25833 -25.47721 -24.28315 -22.62757 -21.37928 -21.12829 -20.73209 -18.99076 -18.00420 -17.78579 -17.11751 -16.52187 -16.29247 -15.83648 -15.43676 -15.18129 -14.80799 -14.65454 -14.52939 -14.35832 -14.04820 -13.91807 -13.74368 -13.20804 -12.84080 -12.76552 -12.56077 -12.39301 -12.11457 -12.00250 -11.89688 -11.70921 -11.08540 -11.04519 -11.04088 -10.77552 -10.61278 -10.48950 -10.23706 -10.11283 -10.09138 -9.81651 -9.34136 -9.06455 -8.82187 -8.74174 -8.23505 -6.49736 -6.21776 -3.92165 2.27179 2.98081 3.06623 3.14061 3.22875 3.27322 3.32063 3.76419 3.88092 4.20520 4.46507 4.52976 4.61150 4.66956 4.84630 4.92881 4.99725 5.13039 5.13248 5.15757 5.19818 5.30599 5.35612 5.47442 5.52492 5.55216 5.67411 5.71339 5.82058 5.90122 6.00951 6.07659 6.10265 6.14960 6.17774 6.30872 6.32767 6.34230 6.51735 6.75318 6.88951 7.02107 7.58976 7.77970 7.88158 8.34769 8.67179 9.23438 10.85531 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.002671 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.058629 B =10479.414240 C =12086.473422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.730 5.730 14 C 0.154 3.846 15 H 0.086 0.914 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.107 4.107 20 C -0.089 4.089 21 H 0.082 0.918 22 C 0.063 3.937 23 N -0.671 5.671 24 C 0.037 3.963 25 C 0.516 3.484 26 N -0.859 5.859 27 O -0.530 6.530 28 H 0.269 0.731 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.396 0.604 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.349 0.651 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.402 0.598 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.852 -20.245 -6.933 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.385 5.385 14 C 0.049 3.951 15 H 0.104 0.896 16 C -0.168 4.168 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.101 0.899 22 C -0.066 4.066 23 N -0.303 5.303 24 C -0.095 4.095 25 C 0.300 3.700 26 N -0.424 5.424 27 O -0.405 6.405 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.231 0.769 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.168 0.832 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.230 0.770 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.371 -20.726 -6.092 23.963 hybrid contribution 1.709 1.366 -0.955 2.388 sum 12.080 -19.360 -7.048 23.883 Atomic orbital electron populations 1.70005 1.05943 1.27545 1.46831 1.24985 0.95018 0.99000 0.94563 0.86237 0.79245 0.81294 0.78797 1.19958 1.20824 1.19943 1.22829 0.94857 0.91724 1.58983 0.91028 1.85383 1.04979 0.96259 1.96708 1.23534 1.06478 0.95659 1.04759 1.20275 0.86591 0.86258 0.75057 1.90694 1.15369 1.85587 1.47658 1.46131 1.09789 1.05190 1.77380 1.20832 0.96855 0.81064 0.96375 0.89609 1.21903 0.98054 1.01530 0.95344 1.21506 0.95380 1.00129 0.98635 1.21570 0.98783 0.99273 0.96135 1.21498 0.96807 1.01833 0.94340 1.21405 0.96213 0.99510 0.93674 0.89929 1.22058 0.94151 0.96270 0.94136 1.60166 1.49009 1.06349 1.14784 1.21816 0.98174 0.98757 0.90783 1.20638 0.81263 0.86548 0.81527 1.43880 1.52666 1.31179 1.14666 1.90763 1.56836 1.32157 1.60763 0.92143 0.89441 0.89369 0.76856 0.91023 0.91457 0.92287 0.91777 0.92155 0.92160 0.90331 0.92328 0.94659 0.90346 0.83175 0.92089 0.87762 0.77006 0.76768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.53 7.81 -10.99 -0.09 9.45 16 12 O -0.52 -11.37 15.52 5.56 0.09 -11.29 16 13 N -0.73 -9.24 3.62 -53.80 -0.19 -9.43 16 14 C 0.15 1.73 2.23 -67.93 -0.15 1.58 16 15 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 16 C -0.13 -1.44 5.60 -26.73 -0.15 -1.59 16 17 C -0.12 -1.18 5.77 -26.73 -0.15 -1.33 16 18 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 19 C -0.11 -0.91 4.92 -26.73 -0.13 -1.04 16 20 C -0.09 -0.76 2.12 -90.62 -0.19 -0.95 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 22 C 0.06 0.53 4.84 -3.83 -0.02 0.51 16 23 N -0.67 -5.55 5.58 -115.06 -0.64 -6.19 16 24 C 0.04 0.25 6.17 -4.98 -0.03 0.22 16 25 C 0.52 4.19 8.14 -10.99 -0.09 4.10 16 26 N -0.86 -3.76 8.87 31.22 0.28 -3.49 16 27 O -0.53 -6.68 17.04 5.56 0.09 -6.58 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 30 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 31 H 0.40 4.20 6.67 -40.82 -0.27 3.92 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.72 7.75 -51.93 -0.40 0.32 16 39 H 0.06 0.51 6.51 -51.93 -0.34 0.17 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.71 7.61 -51.93 -0.40 0.31 16 42 H 0.35 2.97 8.43 -39.29 -0.33 2.64 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.40 0.64 8.83 -40.82 -0.36 0.28 16 46 H 0.40 1.51 8.93 -40.82 -0.36 1.15 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -36.17 385.56 -9.26 -45.42 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.45 Total: 4.54 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.74 Total: -5.91 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.17 Total: -44.43 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.18 Total: -17.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.17 -9.26 -45.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699477032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.874 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds