Wall clock time and date at job start Tue Mar 31 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48499 * 109.46837 * 269.99602 * 3 2 1 5 5 H 1.48499 * 109.47248 * 29.99702 * 3 2 1 6 6 H 1.48498 * 109.46779 * 149.99818 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 H 1.08999 * 109.47228 * 325.27715 * 14 13 11 16 16 C 1.52999 * 109.47341 * 85.27876 * 14 13 11 17 17 C 1.52997 * 109.47188 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46860 * 299.99296 * 17 16 14 19 19 C 1.53003 * 109.46811 * 60.01012 * 18 17 16 20 20 C 1.53001 * 109.47193 * 205.27836 * 14 13 11 21 21 H 1.08999 * 109.46935 * 300.00059 * 20 14 13 22 22 C 1.53005 * 109.47302 * 60.00110 * 20 14 13 23 23 N 1.46893 * 109.47021 * 184.99980 * 22 20 14 24 24 C 1.46908 * 110.99532 * 179.97438 * 23 22 20 25 25 C 1.50697 * 109.46759 * 180.02562 * 24 23 22 26 26 N 1.34785 * 119.99838 * 180.02562 * 25 24 23 27 27 O 1.21284 * 120.00606 * 0.02562 * 25 24 23 28 28 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 30 30 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 31 31 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.46823 * 300.00095 * 16 14 13 33 33 H 1.08999 * 109.47091 * 59.99755 * 16 14 13 34 34 H 1.09002 * 109.46693 * 180.02562 * 17 16 14 35 35 H 1.08993 * 109.47585 * 60.00233 * 17 16 14 36 36 H 1.08999 * 109.47459 * 300.00495 * 18 17 16 37 37 H 1.09005 * 109.47227 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47291 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47531 * 59.99527 * 19 18 17 40 40 H 1.09003 * 109.46749 * 305.00188 * 22 20 14 41 41 H 1.08997 * 109.46844 * 64.99867 * 22 20 14 42 42 H 1.00904 * 111.00203 * 56.04973 * 23 22 20 43 43 H 1.09002 * 109.47508 * 299.99989 * 24 23 22 44 44 H 1.08995 * 109.47023 * 60.00492 * 24 23 22 45 45 H 0.96993 * 119.99776 * 359.97438 * 26 25 24 46 46 H 0.96996 * 119.99631 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 1 1.4146 -7.7572 0.5970 16 6 2.0340 -8.1556 -1.4274 17 6 1.4969 -9.5882 -1.4204 18 6 2.5420 -10.5216 -0.8059 19 6 2.8382 -10.0811 0.6291 20 6 3.3758 -8.6481 0.6218 21 1 4.2916 -8.6059 0.0323 22 6 3.6722 -8.2075 2.0568 23 7 4.7604 -9.0274 2.6058 24 6 5.0733 -8.6312 3.9854 25 6 6.1920 -9.4918 4.5136 26 7 6.6493 -9.3075 5.7680 27 8 6.6809 -10.3502 3.8100 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7313 0.8906 30 1 3.1245 -3.7313 -0.8893 31 1 3.8009 -6.1835 0.0004 32 1 1.2893 -7.4909 -1.8651 33 1 2.9499 -8.1135 -2.0170 34 1 1.2862 -9.9022 -2.4427 35 1 0.5810 -9.6300 -0.8311 36 1 3.4579 -10.4798 -1.3953 37 1 2.1595 -11.5424 -0.8012 38 1 3.5831 -10.7457 1.0668 39 1 1.9223 -10.1229 1.2185 40 1 3.9696 -7.1589 2.0608 41 1 2.7783 -8.3339 2.6676 42 1 5.5810 -8.9778 2.0208 43 1 5.3807 -7.5856 4.0025 44 1 4.1893 -8.7603 4.6098 45 1 6.2586 -8.6208 6.3306 46 1 7.3691 -9.8617 6.1081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699477033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:54 Heat of formation + Delta-G solvation = -99.347716 kcal Electronic energy + Delta-G solvation = -25715.544559 eV Core-core repulsion = 21957.994266 eV Total energy + Delta-G solvation = -3757.550293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14690 -39.69588 -38.11513 -35.80744 -34.03841 -33.97775 -32.44673 -31.55602 -30.36974 -28.39231 -27.23415 -25.49453 -24.30744 -22.58199 -21.36814 -20.93624 -20.35033 -19.86095 -17.97712 -17.75378 -17.11056 -16.45446 -16.31962 -16.22067 -15.12488 -15.03706 -14.82340 -14.71595 -14.51550 -14.33243 -14.02957 -13.97656 -13.78252 -13.21668 -12.94704 -12.82075 -12.61764 -12.48778 -12.09052 -12.04333 -11.85273 -11.25666 -11.08780 -11.07967 -11.03979 -10.81308 -10.67847 -10.61131 -10.33650 -10.21972 -10.09256 -9.82615 -9.34271 -9.08763 -8.88077 -8.71016 -8.25078 -6.51609 -6.23530 -3.94014 2.27589 2.98459 3.03140 3.10512 3.20492 3.26433 3.30579 3.71301 3.88583 4.18676 4.43797 4.52376 4.63237 4.71581 4.86800 4.92273 4.98718 5.11472 5.12742 5.14746 5.18396 5.27855 5.34765 5.43038 5.48274 5.57227 5.64936 5.73897 5.86765 5.89443 6.00992 6.05054 6.07622 6.11519 6.12036 6.30658 6.32135 6.35915 6.52030 6.70741 6.89292 7.02368 7.57534 7.73155 7.88573 8.33202 8.63469 9.21794 10.83834 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010805 B = 0.002690 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.652052 B =10406.967593 C =12598.801706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.736 5.736 14 C 0.154 3.846 15 H 0.088 0.912 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.103 4.103 20 C -0.088 4.088 21 H 0.074 0.926 22 C 0.061 3.939 23 N -0.671 5.671 24 C 0.037 3.963 25 C 0.516 3.484 26 N -0.859 5.859 27 O -0.530 6.530 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.395 0.605 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.349 0.651 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.402 0.598 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.773 -20.250 6.949 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.389 5.389 14 C 0.048 3.952 15 H 0.106 0.894 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.141 4.141 20 C -0.107 4.107 21 H 0.093 0.907 22 C -0.067 4.067 23 N -0.303 5.303 24 C -0.095 4.095 25 C 0.300 3.700 26 N -0.424 5.424 27 O -0.405 6.405 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.228 0.772 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.168 0.832 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.230 0.770 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.364 -21.481 6.536 24.328 hybrid contribution 3.023 2.460 0.351 3.913 sum 12.387 -19.022 6.887 23.721 Atomic orbital electron populations 1.70020 1.05943 1.27452 1.46854 1.24993 0.95027 0.99022 0.94554 0.86173 0.79389 0.81598 0.78369 1.20262 1.20744 1.19726 1.22862 0.94874 0.91704 1.58942 0.90997 1.85401 1.04926 0.96277 1.96703 1.23536 1.06522 0.95643 1.04744 1.20281 0.86603 0.86228 0.75054 1.90701 1.15314 1.85550 1.47439 1.46126 1.09666 1.05460 1.77642 1.20900 0.97426 0.80309 0.96555 0.89354 1.21911 1.01607 0.96645 0.96569 1.21508 0.98715 0.94410 1.00899 1.21594 0.99087 0.98822 0.96426 1.21465 1.01444 0.94747 0.96410 1.21403 0.98628 0.95807 0.94879 0.90741 1.22074 0.94734 0.94440 0.95489 1.60166 1.12155 1.56641 1.01359 1.21816 0.97723 0.96953 0.93045 1.20643 0.83596 0.84059 0.81678 1.43879 1.41496 1.41270 1.15750 1.90763 1.58625 1.33851 1.57278 0.92178 0.89472 0.89338 0.77159 0.91050 0.91998 0.91977 0.91737 0.92124 0.92039 0.90253 0.91969 0.94382 0.90488 0.83162 0.92003 0.87828 0.77009 0.76770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.03 6.16 36.00 0.22 -2.80 16 11 C 0.53 9.56 7.82 -10.99 -0.09 9.48 16 12 O -0.52 -11.37 15.52 5.55 0.09 -11.28 16 13 N -0.74 -9.30 4.30 -53.81 -0.23 -9.54 16 14 C 0.15 1.75 1.90 -67.93 -0.13 1.62 16 15 H 0.09 1.21 7.57 -51.93 -0.39 0.81 16 16 C -0.13 -1.45 5.50 -26.73 -0.15 -1.60 16 17 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 18 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 19 C -0.10 -0.89 5.09 -26.70 -0.14 -1.02 16 20 C -0.09 -0.77 1.91 -90.59 -0.17 -0.94 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 C 0.06 0.52 4.99 -3.82 -0.02 0.51 16 23 N -0.67 -5.59 5.58 -115.06 -0.64 -6.23 16 24 C 0.04 0.25 6.17 -4.97 -0.03 0.22 16 25 C 0.52 4.22 8.14 -10.98 -0.09 4.13 16 26 N -0.86 -3.82 8.87 31.22 0.28 -3.54 16 27 O -0.53 -6.71 17.04 5.55 0.09 -6.62 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 30 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.39 3.95 8.39 -40.82 -0.34 3.61 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.73 7.75 -51.93 -0.40 0.33 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.04 0.33 7.30 -51.93 -0.38 -0.04 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.35 3.00 8.43 -39.29 -0.33 2.67 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.40 0.66 8.83 -40.82 -0.36 0.30 16 46 H 0.40 1.54 8.93 -40.82 -0.36 1.18 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -36.28 389.67 -9.37 -45.64 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.61 Total: 4.27 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.71 Total: -5.71 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.14 Total: -44.57 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.18 Total: -17.90 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.28 -9.37 -45.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699477033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.703 kcal (2) G-P(sol) polarization free energy of solvation -36.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds