Wall clock time and date at job start Tue Mar 31 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48506 * 109.47258 * 270.00179 * 3 2 1 5 5 H 1.48495 * 109.47179 * 30.00296 * 3 2 1 6 6 H 1.48496 * 109.47009 * 150.00201 * 3 2 1 7 7 C 1.38793 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00084 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00453 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47354 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99756 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99841 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47004 * 325.00110 * 14 13 11 16 16 C 1.52989 * 109.47058 * 85.00417 * 14 13 11 17 17 C 1.52993 * 109.47704 * 59.99731 * 16 14 13 18 18 C 1.53009 * 109.46793 * 59.99856 * 17 16 14 19 19 C 1.52989 * 109.47149 * 300.00111 * 18 17 16 20 20 C 1.53002 * 109.47252 * 60.00403 * 19 18 17 21 21 H 1.09001 * 109.47430 * 59.99214 * 20 19 18 22 22 C 1.52999 * 109.47645 * 179.97438 * 20 19 18 23 23 N 1.46906 * 109.46897 * 294.99789 * 22 20 19 24 24 C 1.46898 * 110.99888 * 179.97438 * 23 22 20 25 25 C 1.50705 * 109.46661 * 180.02562 * 24 23 22 26 26 N 1.34775 * 119.99549 * 179.97438 * 25 24 23 27 27 O 1.21279 * 120.00344 * 359.97438 * 25 24 23 28 28 H 0.96998 * 120.00451 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47218 * 59.99993 * 10 9 7 30 30 H 1.09008 * 109.46896 * 300.00188 * 10 9 7 31 31 H 0.96999 * 120.00298 * 359.97438 * 13 11 10 32 32 H 1.09007 * 109.47303 * 299.99416 * 16 14 13 33 33 H 1.09001 * 109.47240 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.47239 * 300.00573 * 17 16 14 35 35 H 1.08998 * 109.47970 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.46604 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.46833 * 60.00647 * 18 17 16 38 38 H 1.08993 * 109.47691 * 300.00011 * 19 18 17 39 39 H 1.09006 * 109.47359 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47486 * 174.99813 * 22 20 19 41 41 H 1.09001 * 109.47362 * 54.99090 * 22 20 19 42 42 H 1.00902 * 110.99923 * 303.95801 * 23 22 20 43 43 H 1.08995 * 109.47296 * 299.99911 * 24 23 22 44 44 H 1.08997 * 109.47334 * 60.00212 * 24 23 22 45 45 H 0.97003 * 120.00664 * 0.02562 * 26 25 24 46 46 H 0.97000 * 119.99963 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 1 1.4148 -7.7602 0.5880 16 6 2.0332 -8.1483 -1.4387 17 6 3.3181 -8.0849 -2.2667 18 6 4.3639 -9.0211 -1.6577 19 6 4.6612 -8.5878 -0.2209 20 6 3.3761 -8.6513 0.6072 21 1 2.9938 -9.6721 0.6071 22 6 3.6734 -8.2186 2.0443 23 7 4.5858 -9.1863 2.6682 24 6 4.8948 -8.8021 4.0519 25 6 5.8315 -9.8155 4.6574 26 7 6.2546 -9.6671 5.9283 27 8 6.2045 -10.7647 4.0010 28 1 -0.4851 0.8400 0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1244 -3.7313 -0.8906 31 1 3.8008 -6.1835 -0.0022 32 1 1.2881 -7.4813 -1.8726 33 1 1.6505 -9.1689 -1.4388 34 1 3.7004 -7.0641 -2.2667 35 1 3.1066 -8.3939 -3.2903 36 1 5.2795 -8.9755 -2.2473 37 1 3.9817 -10.0418 -1.6578 38 1 5.0434 -7.5671 -0.2208 39 1 5.4059 -9.2551 0.2132 40 1 2.7434 -8.1783 2.6114 41 1 4.1383 -7.2328 2.0382 42 1 4.2052 -10.1199 2.6281 43 1 5.3682 -7.8203 4.0593 44 1 3.9735 -8.7655 4.6332 45 1 5.9560 -8.9082 6.4535 46 1 6.8572 -10.3196 6.3182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699477034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:57 Heat of formation + Delta-G solvation = -96.339029 kcal Electronic energy + Delta-G solvation = -25926.374164 eV Core-core repulsion = 22168.954338 eV Total energy + Delta-G solvation = -3757.419826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30983 -39.73731 -38.00511 -35.83202 -34.04134 -33.47357 -32.43234 -31.57764 -30.51633 -28.53471 -27.25824 -25.48000 -24.28362 -22.62668 -21.37957 -21.12852 -20.73199 -18.99068 -18.00499 -17.78678 -17.11747 -16.52264 -16.29297 -15.83650 -15.43714 -15.18184 -14.80924 -14.65470 -14.52968 -14.35862 -14.05015 -13.91912 -13.74419 -13.20824 -12.84211 -12.76600 -12.56209 -12.39331 -12.11431 -12.00281 -11.89685 -11.70963 -11.08683 -11.06424 -11.02568 -10.77048 -10.61239 -10.48953 -10.23722 -10.11219 -10.09108 -9.80942 -9.34152 -9.07256 -8.82169 -8.74173 -8.23136 -6.49801 -6.22073 -3.92315 2.27194 2.98063 3.06621 3.14048 3.21745 3.27836 3.32730 3.76424 3.88029 4.20286 4.46470 4.52978 4.61182 4.66936 4.84670 4.92917 4.99754 5.13041 5.13079 5.15767 5.19841 5.30590 5.35645 5.47455 5.52489 5.55232 5.67398 5.71355 5.82067 5.90100 6.00938 6.07672 6.10256 6.14939 6.17807 6.30895 6.32776 6.34254 6.51746 6.75320 6.88938 7.02195 7.59201 7.77975 7.88155 8.34863 8.67171 9.23343 10.85320 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.002671 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.664979 B =10480.601890 C =12087.651984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.730 5.730 14 C 0.155 3.845 15 H 0.086 0.914 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.107 4.107 20 C -0.089 4.089 21 H 0.082 0.918 22 C 0.063 3.937 23 N -0.671 5.671 24 C 0.037 3.963 25 C 0.516 3.484 26 N -0.859 5.859 27 O -0.530 6.530 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.396 0.604 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.349 0.651 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.402 0.598 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.875 -20.257 6.907 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.385 5.385 14 C 0.049 3.951 15 H 0.104 0.896 16 C -0.168 4.168 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.101 0.899 22 C -0.066 4.066 23 N -0.303 5.303 24 C -0.095 4.095 25 C 0.300 3.700 26 N -0.424 5.424 27 O -0.405 6.405 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.231 0.769 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.168 0.832 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.230 0.770 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.396 -20.741 6.069 23.981 hybrid contribution 1.701 1.368 0.950 2.381 sum 12.097 -19.373 7.019 23.894 Atomic orbital electron populations 1.70015 1.05943 1.27430 1.46931 1.24988 0.95021 0.99016 0.94577 0.86176 0.79403 0.81608 0.78363 1.20273 1.20774 1.19708 1.22866 0.94888 0.91706 1.58847 0.90983 1.85385 1.04997 0.96285 1.96701 1.23533 1.06473 0.95660 1.04762 1.20274 0.86590 0.86256 0.75058 1.90693 1.15369 1.85585 1.47653 1.46132 1.09788 1.05190 1.77384 1.20831 0.96842 0.81064 0.96385 0.89613 1.21899 0.98060 1.01533 0.95336 1.21507 0.95382 1.00124 0.98634 1.21570 0.98775 0.99276 0.96142 1.21496 0.96814 1.01836 0.94336 1.21408 0.96210 0.99510 0.93676 0.89934 1.22058 0.94142 0.96259 0.94153 1.60152 1.48934 1.06349 1.14897 1.21814 0.98153 0.98759 0.90793 1.20641 0.81270 0.86546 0.81517 1.43880 1.52609 1.31185 1.14721 1.90762 1.56950 1.32155 1.60648 0.92203 0.89438 0.89369 0.76856 0.91021 0.91459 0.91772 0.92287 0.92160 0.92149 0.92328 0.90332 0.94657 0.90350 0.83165 0.87770 0.92080 0.77006 0.76772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.53 7.81 -10.99 -0.09 9.44 16 12 O -0.52 -11.37 15.52 5.56 0.09 -11.28 16 13 N -0.73 -9.24 3.62 -53.81 -0.19 -9.43 16 14 C 0.15 1.73 2.23 -67.93 -0.15 1.58 16 15 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 16 C -0.13 -1.44 5.60 -26.74 -0.15 -1.59 16 17 C -0.12 -1.18 5.77 -26.73 -0.15 -1.33 16 18 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 19 C -0.11 -0.91 4.92 -26.74 -0.13 -1.04 16 20 C -0.09 -0.76 2.12 -90.61 -0.19 -0.95 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 22 C 0.06 0.53 4.84 -3.82 -0.02 0.51 16 23 N -0.67 -5.55 5.58 -115.06 -0.64 -6.19 16 24 C 0.04 0.25 6.17 -4.97 -0.03 0.22 16 25 C 0.52 4.19 8.14 -10.98 -0.09 4.10 16 26 N -0.86 -3.76 8.87 31.22 0.28 -3.49 16 27 O -0.53 -6.68 17.04 5.56 0.09 -6.58 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 31 H 0.40 4.20 6.67 -40.82 -0.27 3.93 16 32 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.51 6.50 -51.93 -0.34 0.17 16 39 H 0.08 0.72 7.75 -51.93 -0.40 0.32 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.70 7.61 -51.93 -0.40 0.31 16 42 H 0.35 2.97 8.43 -39.29 -0.33 2.64 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.40 0.64 8.83 -40.82 -0.36 0.28 16 46 H 0.40 1.52 8.93 -40.82 -0.36 1.15 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -36.18 385.56 -9.26 -45.44 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.45 Total: 4.51 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.74 Total: -5.89 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.17 Total: -44.42 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.18 Total: -17.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.18 -9.26 -45.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699477034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.896 kcal (2) G-P(sol) polarization free energy of solvation -36.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds