Wall clock time and date at job start Tue Mar 31 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 119.99985 * 2 1 4 4 H 1.48502 * 109.47088 * 270.00349 * 3 2 1 5 5 H 1.48499 * 109.47286 * 29.99967 * 3 2 1 6 6 H 1.48499 * 109.47199 * 150.00303 * 3 2 1 7 7 C 1.38799 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00180 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99946 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00154 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47436 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99557 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00343 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00109 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47292 * 35.00292 * 14 13 11 16 16 C 1.52998 * 109.47136 * 274.99635 * 14 13 11 17 17 C 1.53000 * 109.47323 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47155 * 60.00068 * 17 16 14 19 19 C 1.53008 * 109.47284 * 299.99960 * 18 17 16 20 20 C 1.53001 * 109.46573 * 60.00276 * 19 18 17 21 21 H 1.08990 * 109.47720 * 60.00038 * 20 19 18 22 22 C 1.53008 * 109.46895 * 180.02562 * 20 19 18 23 23 N 1.46902 * 109.46622 * 294.99786 * 22 20 19 24 24 C 1.46906 * 110.99573 * 179.97438 * 23 22 20 25 25 C 1.50699 * 109.46990 * 180.02562 * 24 23 22 26 26 N 1.34771 * 119.99971 * 179.97438 * 25 24 23 27 27 O 1.21287 * 119.99883 * 0.02562 * 25 24 23 28 28 H 0.97001 * 119.99941 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47143 * 59.99391 * 10 9 7 30 30 H 1.09005 * 109.46584 * 300.00195 * 10 9 7 31 31 H 0.97001 * 120.00230 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.47131 * 60.00079 * 16 14 13 33 33 H 1.09003 * 109.47392 * 300.00493 * 16 14 13 34 34 H 1.09003 * 109.46630 * 300.00168 * 17 16 14 35 35 H 1.09001 * 109.46926 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47112 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47531 * 60.00044 * 18 17 16 38 38 H 1.08999 * 109.46905 * 300.00467 * 19 18 17 39 39 H 1.08996 * 109.46975 * 180.02562 * 19 18 17 40 40 H 1.08990 * 109.46924 * 174.99924 * 22 20 19 41 41 H 1.09004 * 109.46978 * 54.99801 * 22 20 19 42 42 H 1.00896 * 111.00219 * 303.95583 * 23 22 20 43 43 H 1.09002 * 109.46991 * 299.99841 * 24 23 22 44 44 H 1.09000 * 109.47202 * 60.00133 * 24 23 22 45 45 H 0.97000 * 120.00083 * 0.02562 * 26 25 24 46 46 H 0.97001 * 119.99860 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5731 -3.2326 -0.0026 12 8 6.3440 -2.2964 -0.0024 13 7 6.0457 -4.4947 -0.0030 14 6 7.4907 -4.7358 -0.0026 15 1 7.9874 -3.9656 0.5874 16 6 8.0150 -4.6951 -1.4393 17 6 9.5240 -4.9475 -1.4390 18 6 9.8112 -6.3213 -0.8301 19 6 9.2869 -6.3621 0.6068 20 6 7.7779 -6.1098 0.6063 21 1 7.2809 -6.8797 0.0163 22 6 7.2536 -6.1498 2.0433 23 7 7.4211 -7.5039 2.5879 24 6 6.9280 -7.5802 3.9696 25 6 7.1166 -8.9805 4.4936 26 7 6.7342 -9.2874 5.7490 27 8 7.6132 -9.8310 3.7859 28 1 -0.4850 0.8401 0.0004 29 1 3.6433 -3.4311 -0.8926 30 1 3.6440 -3.4322 0.8874 31 1 5.4291 -5.2435 -0.0029 32 1 7.8101 -3.7165 -1.8733 33 1 7.5183 -5.4654 -2.0294 34 1 10.0210 -4.1774 -0.8489 35 1 9.8976 -4.9181 -2.4626 36 1 10.8863 -6.5010 -0.8294 37 1 9.3142 -7.0914 -1.4201 38 1 9.7839 -5.5920 1.1968 39 1 9.4919 -7.3407 1.0407 40 1 6.1970 -5.8828 2.0520 41 1 7.8127 -5.4408 2.6539 42 1 6.9655 -8.1879 2.0027 43 1 7.4852 -6.8811 4.5933 44 1 5.8691 -7.3229 3.9922 45 1 6.3373 -8.6070 6.3151 46 1 6.8552 -10.1888 6.0861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699477035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:00 Heat of formation + Delta-G solvation = -99.137872 kcal Electronic energy + Delta-G solvation = -25765.217512 eV Core-core repulsion = 22007.676318 eV Total energy + Delta-G solvation = -3757.541193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.21542 -39.72819 -38.21402 -35.83907 -34.07927 -34.04377 -32.46040 -31.60181 -30.48031 -28.49126 -27.27851 -25.63005 -24.34672 -22.66124 -21.41034 -20.95779 -20.43661 -19.94109 -18.00627 -17.77268 -17.12566 -16.50022 -16.41690 -16.28000 -15.20225 -15.10714 -14.97326 -14.77510 -14.55687 -14.35326 -14.04587 -13.98026 -13.79524 -13.36376 -12.90629 -12.86453 -12.80806 -12.63499 -12.16895 -12.09556 -11.94625 -11.31852 -11.28738 -11.12934 -11.02824 -10.78369 -10.68961 -10.58465 -10.36034 -10.25460 -10.10159 -9.87055 -9.47481 -9.03199 -8.95369 -8.75484 -8.52022 -6.93857 -6.31190 -4.02871 2.26478 2.75367 2.96849 2.97440 3.29381 3.33050 3.48569 3.64538 3.85814 4.31084 4.39955 4.49929 4.57860 4.65879 4.74049 4.84472 4.89675 4.96003 5.07296 5.08129 5.12489 5.21985 5.25044 5.30545 5.42091 5.45998 5.53360 5.68878 5.73854 5.84431 5.96244 5.97525 6.00097 6.02653 6.06713 6.25448 6.28703 6.32484 6.49532 6.61299 6.87745 7.00347 7.62227 7.87520 7.91907 8.39161 8.50181 9.15074 10.78075 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002736 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.672368 B =10230.606473 C =12209.686838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.087 0.913 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.154 3.846 15 H 0.089 0.911 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.103 4.103 20 C -0.088 4.088 21 H 0.075 0.925 22 C 0.061 3.939 23 N -0.671 5.671 24 C 0.037 3.963 25 C 0.516 3.484 26 N -0.859 5.859 27 O -0.530 6.530 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.396 0.604 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.350 0.650 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.402 0.598 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.478 -18.171 7.007 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.105 0.895 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.387 5.387 14 C 0.048 3.952 15 H 0.107 0.893 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.141 4.141 20 C -0.107 4.107 21 H 0.093 0.907 22 C -0.067 4.067 23 N -0.304 5.304 24 C -0.095 4.095 25 C 0.300 3.700 26 N -0.424 5.424 27 O -0.405 6.405 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.230 0.770 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.169 0.831 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.230 0.770 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 18.580 -16.801 6.589 25.902 hybrid contribution -2.392 -0.656 0.326 2.501 sum 16.188 -17.457 6.915 24.792 Atomic orbital electron populations 1.69940 1.05929 1.27780 1.48090 1.24720 0.94454 0.98987 0.93183 0.86730 0.81878 0.83252 0.79962 1.19198 1.19955 1.15913 1.22317 0.88326 0.97495 1.58763 0.89450 1.84790 1.09195 1.00089 1.97413 1.23286 0.94252 1.04346 1.05641 1.20251 0.90450 0.82441 0.75151 1.90698 1.58714 1.42166 1.47670 1.46090 1.07353 1.07858 1.77369 1.20917 0.80952 0.96675 0.96624 0.89335 1.21913 0.95744 1.02595 0.96492 1.21506 0.95713 0.97362 1.00942 1.21594 1.00703 0.97223 0.96428 1.21456 0.93227 1.02992 0.96395 1.21394 0.97867 0.96537 0.94930 0.90664 1.22073 0.99460 0.89742 0.95464 1.60147 1.62619 1.06234 1.01352 1.21815 1.00266 0.94478 0.92971 1.20633 0.77056 0.90591 0.81701 1.43876 1.66580 1.16341 1.15575 1.90765 1.42568 1.50120 1.57069 0.91934 0.88606 0.88694 0.76975 0.91095 0.91920 0.91775 0.91947 0.92008 0.92073 0.91992 0.90194 0.94375 0.90514 0.83111 0.87852 0.91963 0.77001 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.63 27.74 -169.99 -4.71 16.91 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 7 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 11 C 0.53 9.00 7.81 -10.99 -0.09 8.91 16 12 O -0.52 -10.77 15.52 5.56 0.09 -10.68 16 13 N -0.73 -8.73 4.30 -53.81 -0.23 -8.96 16 14 C 0.15 1.65 1.90 -67.93 -0.13 1.52 16 15 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 16 C -0.13 -1.38 5.49 -26.73 -0.15 -1.52 16 17 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 18 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 19 C -0.10 -0.85 5.09 -26.73 -0.14 -0.98 16 20 C -0.09 -0.73 1.91 -90.61 -0.17 -0.90 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 C 0.06 0.50 4.99 -3.82 -0.02 0.48 16 23 N -0.67 -5.39 5.58 -115.05 -0.64 -6.03 16 24 C 0.04 0.24 6.17 -4.97 -0.03 0.21 16 25 C 0.52 4.14 8.14 -10.99 -0.09 4.05 16 26 N -0.86 -3.73 8.87 31.22 0.28 -3.45 16 27 O -0.53 -6.64 17.04 5.55 0.09 -6.54 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 31 H 0.40 3.71 8.39 -40.82 -0.34 3.36 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.71 7.75 -51.93 -0.40 0.31 16 40 H 0.04 0.32 7.30 -51.93 -0.38 -0.06 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.35 2.92 8.43 -39.29 -0.33 2.59 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.40 0.62 8.83 -40.82 -0.36 0.26 16 46 H 0.40 1.51 8.93 -40.82 -0.36 1.14 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -35.96 386.97 -8.85 -44.81 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.65 Total: 3.84 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.69 Total: -4.57 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.18 Total: -44.09 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.96 -8.85 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699477035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.325 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds