Wall clock time and date at job start Tue Mar 31 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48508 * 109.46709 * 269.99704 * 3 2 1 5 5 H 1.48497 * 109.47337 * 29.99519 * 3 2 1 6 6 H 1.48496 * 109.47357 * 150.00136 * 3 2 1 7 7 C 1.38799 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99743 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00489 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00066 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47077 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99963 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99918 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99858 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46865 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.46899 * 179.97438 * 15 14 13 17 17 C 1.53119 * 109.52018 * 185.00022 * 16 15 14 18 18 C 1.53039 * 109.27478 * 182.37728 * 17 16 15 19 19 N 1.46852 * 109.52336 * 59.18093 * 18 17 16 20 20 C 1.46900 * 111.00118 * 174.15791 * 19 18 17 21 21 C 1.50697 * 109.47237 * 293.61170 * 20 19 18 22 22 N 1.34774 * 120.00462 * 173.73265 * 21 20 19 23 23 O 1.21281 * 120.00181 * 353.73194 * 21 20 19 24 24 C 1.46845 * 111.19897 * 298.25829 * 19 18 17 25 25 C 1.53038 * 109.52423 * 61.74130 * 24 19 18 26 26 H 0.97001 * 120.00552 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46556 * 59.99878 * 10 9 7 28 28 H 1.08999 * 109.46982 * 300.00324 * 10 9 7 29 29 H 0.96996 * 120.00059 * 0.02562 * 13 11 10 30 30 H 1.09001 * 109.46778 * 60.00211 * 14 13 11 31 31 H 1.09001 * 109.46993 * 300.00424 * 14 13 11 32 32 H 1.09001 * 109.47218 * 60.00520 * 15 14 13 33 33 H 1.09000 * 109.47174 * 299.99981 * 15 14 13 34 34 H 1.08994 * 109.52585 * 305.13284 * 16 15 14 35 35 H 1.08994 * 109.50056 * 62.44357 * 17 16 15 36 36 H 1.08998 * 109.53606 * 302.33541 * 17 16 15 37 37 H 1.09003 * 109.46821 * 299.16986 * 18 17 16 38 38 H 1.09003 * 109.45395 * 179.18930 * 18 17 16 39 39 H 1.08996 * 109.46919 * 173.61386 * 20 19 18 40 40 H 1.08994 * 109.47139 * 53.61230 * 20 19 18 41 41 H 0.97002 * 119.99260 * 359.97438 * 22 21 20 42 42 H 0.96998 * 120.00588 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.46384 * 181.75671 * 24 19 18 44 44 H 1.09004 * 109.46376 * 301.72164 * 24 19 18 45 45 H 1.08998 * 109.50374 * 180.88473 * 25 24 19 46 46 H 1.09001 * 109.50604 * 60.76106 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3303 -7.7151 0.0008 15 6 3.5023 -8.6986 -0.0004 16 6 2.9658 -10.1315 0.0003 17 6 4.1329 -11.1148 0.1250 18 6 3.5957 -12.5465 0.0654 19 7 2.8911 -12.7539 -1.2062 20 6 2.4817 -14.1565 -1.3587 21 6 3.7058 -15.0257 -1.4895 22 7 3.5802 -16.3673 -1.5135 23 8 4.8040 -14.5180 -1.5731 24 6 1.7380 -11.8529 -1.3274 25 6 2.2196 -10.4004 -1.3095 26 1 -0.4851 0.8400 -0.0004 27 1 3.1244 -3.7313 0.8906 28 1 3.1244 -3.7314 -0.8894 29 1 3.8008 -6.1835 0.0004 30 1 1.7214 -7.8751 -0.8890 31 1 1.7219 -7.8752 0.8910 32 1 4.1116 -8.5388 0.8892 33 1 4.1103 -8.5382 -0.8908 34 1 2.2853 -10.2652 0.8412 35 1 4.6421 -10.9564 1.0755 36 1 4.8335 -10.9546 -0.6945 37 1 2.9061 -12.7106 0.8935 38 1 4.4258 -13.2491 0.1395 39 1 1.8655 -14.2600 -2.2517 40 1 1.9089 -14.4648 -0.4842 41 1 2.7018 -16.7734 -1.4463 42 1 4.3681 -16.9269 -1.5974 43 1 1.2186 -12.0517 -2.2650 44 1 1.0571 -12.0201 -0.4928 45 1 1.3621 -9.7317 -1.3837 46 1 2.8897 -10.2287 -2.1519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753592972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:36 Heat of formation + Delta-G solvation = -88.566494 kcal Electronic energy + Delta-G solvation = -24826.649691 eV Core-core repulsion = 21069.566907 eV Total energy + Delta-G solvation = -3757.082784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38147 -39.28326 -38.69405 -35.86046 -34.15249 -33.79764 -32.40695 -31.18930 -30.63728 -28.93351 -26.90360 -25.46173 -24.18985 -23.23804 -21.60004 -20.88559 -20.38838 -19.85817 -17.90254 -17.79008 -17.25957 -16.28030 -16.13652 -15.92547 -15.63909 -15.52661 -14.90597 -14.78383 -14.72955 -14.59827 -13.98750 -13.87431 -13.76000 -13.25267 -13.17462 -12.96789 -12.55937 -12.44603 -12.33372 -11.98913 -11.77907 -11.46997 -11.35559 -11.04424 -11.00232 -10.97332 -10.75340 -10.65833 -10.51882 -10.24019 -10.08744 -9.78924 -9.34127 -9.04800 -8.80449 -8.71793 -8.20773 -6.47362 -6.19511 -3.89808 2.19987 2.85253 3.08387 3.15631 3.24104 3.29923 3.34921 3.58111 3.76897 4.22745 4.36617 4.44139 4.49023 4.50341 4.70791 4.74618 4.92228 4.97776 5.05348 5.14043 5.15593 5.16796 5.25484 5.30657 5.35687 5.52562 5.55856 5.64437 5.69599 5.71155 5.84575 5.88098 5.92822 5.98771 6.08077 6.17880 6.20079 6.28205 6.52421 6.68573 6.69895 6.87307 7.61771 7.77736 7.82716 8.37461 8.67324 9.25814 10.87957 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.049739 B = 0.001554 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.807324 B =18012.213187 C =18311.463287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.520 6.520 13 N -0.740 5.740 14 C 0.120 3.880 15 C -0.125 4.125 16 C -0.085 4.085 17 C -0.108 4.108 18 C 0.054 3.946 19 N -0.521 5.521 20 C 0.034 3.966 21 C 0.515 3.485 22 N -0.861 5.861 23 O -0.521 6.521 24 C 0.057 3.943 25 C -0.115 4.115 26 H 0.268 0.732 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.400 0.600 42 H 0.402 0.598 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -33.445 -1.181 34.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.394 5.394 14 C -0.004 4.004 15 C -0.163 4.163 16 C -0.104 4.104 17 C -0.146 4.146 18 C -0.074 4.074 19 N -0.246 5.246 20 C -0.097 4.097 21 C 0.299 3.701 22 N -0.426 5.426 23 O -0.395 6.395 24 C -0.071 4.071 25 C -0.153 4.153 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.228 0.772 42 H 0.233 0.767 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.866 -33.029 -1.594 33.584 hybrid contribution 1.687 0.584 0.630 1.893 sum 7.553 -32.445 -0.964 33.327 Atomic orbital electron populations 1.70019 1.05953 1.27422 1.46933 1.24987 0.95018 0.99007 0.94547 0.86169 0.79412 0.81579 0.78344 1.20273 1.20759 1.19705 1.22879 0.94925 0.91692 1.58876 0.90934 1.85382 1.05048 0.96317 1.96713 1.23534 1.06501 0.95490 1.04899 1.20298 0.86544 0.86322 0.75173 1.90693 1.15405 1.85667 1.47646 1.46024 1.09908 1.05664 1.77814 1.21339 0.96231 0.80598 1.02234 1.21821 0.97786 0.93750 1.02901 1.21146 0.97248 0.93840 0.98189 1.21587 0.97699 0.92900 1.02370 1.22206 0.98232 0.98568 0.88361 1.61604 1.25497 1.01963 1.35536 1.21951 0.94878 0.89708 1.03197 1.20609 0.91258 0.82692 0.75580 1.43901 1.12961 1.07356 1.78359 1.90763 1.27765 1.73451 1.47520 1.22141 0.90878 0.93064 1.00983 1.21724 1.00796 0.94661 0.98112 0.92208 0.89267 0.89236 0.76876 0.91528 0.91901 0.91229 0.91030 0.91140 0.91456 0.90681 0.95337 0.89658 0.87585 0.92043 0.77192 0.76740 0.90516 0.94647 0.90650 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 11 C 0.53 10.15 7.85 -10.99 -0.09 10.06 16 12 O -0.52 -12.06 15.86 5.56 0.09 -11.97 16 13 N -0.74 -10.13 5.56 -60.29 -0.33 -10.46 16 14 C 0.12 1.41 5.44 -4.04 -0.02 1.38 16 15 C -0.12 -1.05 4.80 -26.73 -0.13 -1.18 16 16 C -0.09 -0.67 2.25 -90.49 -0.20 -0.88 16 17 C -0.11 -0.87 5.38 -26.65 -0.14 -1.01 16 18 C 0.05 0.44 5.12 -3.83 -0.02 0.42 16 19 N -0.52 -4.15 4.35 -236.11 -1.03 -5.18 16 20 C 0.03 0.19 5.45 -4.98 -0.03 0.16 16 21 C 0.51 3.62 7.63 -10.99 -0.08 3.54 16 22 N -0.86 -2.59 8.87 31.22 0.28 -2.31 16 23 O -0.52 -6.14 15.55 5.56 0.09 -6.05 16 24 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 25 C -0.12 -0.92 5.08 -26.65 -0.14 -1.06 16 26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 28 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.40 4.26 8.47 -40.82 -0.35 3.92 16 30 H 0.07 0.84 6.64 -51.93 -0.34 0.49 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 0.82 6.06 -51.93 -0.31 0.51 16 39 H 0.11 0.39 7.98 -51.93 -0.41 -0.02 16 40 H 0.06 0.23 8.12 -51.93 -0.42 -0.19 16 41 H 0.40 -0.04 8.83 -40.82 -0.36 -0.40 16 42 H 0.40 1.03 8.93 -40.82 -0.36 0.66 16 43 H 0.08 0.48 8.01 -51.93 -0.42 0.06 16 44 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.63 6.71 -51.93 -0.35 0.28 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -38.06 385.87 -9.57 -47.63 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.52 Total: -0.25 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.45 Total: -4.23 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.35 Total: -43.59 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.17 Total: -18.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.06 -9.57 -47.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753592972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.933 kcal (2) G-P(sol) polarization free energy of solvation -38.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds