Wall clock time and date at job start Tue Mar 31 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46865 * 2 1 4 4 H 1.08997 * 109.46972 * 305.60970 * 3 2 1 5 5 S 1.81403 * 109.47065 * 65.60941 * 3 2 1 6 6 C 1.81403 * 102.99929 * 187.24397 * 5 3 2 7 7 C 1.50696 * 109.46772 * 185.60546 * 3 2 1 8 8 O 1.21277 * 120.00514 * 265.00320 * 7 3 2 9 9 N 1.34780 * 119.99643 * 85.00396 * 7 3 2 10 10 C 1.46503 * 119.99969 * 179.97438 * 9 7 3 11 11 C 1.53001 * 109.47111 * 179.97438 * 10 9 7 12 12 H 1.09000 * 113.03357 * 72.78923 * 11 10 9 13 13 C 1.53934 * 113.76093 * 204.50806 * 11 10 9 14 14 C 1.53930 * 86.45794 * 138.08921 * 13 11 10 15 15 N 1.47957 * 86.18171 * 336.22822 * 14 13 11 16 16 C 1.46900 * 110.99987 * 137.58409 * 15 14 13 17 17 C 1.50700 * 109.47440 * 66.08479 * 16 15 14 18 18 O 1.21292 * 119.99682 * 5.52005 * 17 16 15 19 19 N 1.34771 * 120.00103 * 185.51754 * 17 16 15 20 20 C 1.37092 * 120.00211 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99795 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00352 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99793 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00041 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47239 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47458 * 120.00038 * 24 22 20 27 27 H 1.48511 * 109.47072 * 240.00199 * 24 22 20 28 28 H 1.09001 * 109.47329 * 184.18116 * 1 2 3 29 29 H 1.09007 * 109.46866 * 304.17761 * 1 2 3 30 30 H 1.09004 * 109.47139 * 64.17766 * 1 2 3 31 31 H 1.08997 * 109.46847 * 239.99986 * 2 1 3 32 32 H 1.08995 * 109.46970 * 119.99801 * 2 1 3 33 33 H 1.08996 * 109.46951 * 304.81817 * 6 5 3 34 34 H 1.08997 * 109.46804 * 64.82061 * 6 5 3 35 35 H 1.08993 * 109.46743 * 184.81911 * 6 5 3 36 36 H 0.97001 * 119.99927 * 359.97438 * 9 7 3 37 37 H 1.09004 * 109.46761 * 60.00374 * 10 9 7 38 38 H 1.09000 * 109.47284 * 300.00327 * 10 9 7 39 39 H 1.09004 * 113.72905 * 23.67740 * 13 11 10 40 40 H 1.08999 * 113.73306 * 252.50905 * 13 11 10 41 41 H 1.09005 * 113.75474 * 90.54790 * 14 13 11 42 42 H 1.09004 * 113.76074 * 221.90692 * 14 13 11 43 43 H 1.09004 * 109.46803 * 186.09037 * 16 15 14 44 44 H 1.09000 * 109.46660 * 306.08176 * 16 15 14 45 45 H 0.97004 * 120.00305 * 359.97438 * 19 17 16 46 46 H 0.97000 * 120.00186 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5970 1.9845 -0.8355 5 16 1.5756 2.2481 1.5577 6 6 2.0584 3.9751 1.2837 7 6 3.5406 1.4448 -0.1388 8 8 4.2410 1.5031 0.8496 9 7 4.1043 1.3821 -1.3614 10 6 5.5631 1.3848 -1.4965 11 6 5.9383 1.3060 -2.9776 12 1 5.7485 2.2348 -3.5157 13 6 7.3372 0.7164 -3.2326 14 6 6.6935 -0.0596 -4.3957 15 7 5.4168 0.1000 -3.6652 16 6 4.3247 0.4483 -4.5838 17 6 4.0624 -0.7080 -5.5140 18 8 4.6500 -1.7575 -5.3574 19 7 3.1751 -0.5760 -6.5197 20 6 2.9361 -1.6280 -7.3656 21 1 3.4593 -2.5626 -7.2262 22 6 2.0209 -1.4921 -8.4023 23 7 1.3840 -0.3552 -8.5715 24 14 1.6959 -2.9254 -9.5552 25 1 2.5344 -4.0835 -9.1539 26 1 0.2617 -3.3035 -9.4829 27 1 2.0337 -2.5286 -10.9458 28 1 -0.3634 -1.0249 0.0749 29 1 -0.3633 0.5773 0.8502 30 1 -0.3633 0.4476 -0.9251 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.1111 4.0182 1.0046 34 1 1.4525 4.3990 0.4829 35 1 1.9015 4.5457 2.1990 36 1 3.5441 1.3351 -2.1519 37 1 5.9782 0.5249 -0.9706 38 1 5.9660 2.3023 -1.0675 39 1 7.6980 0.0783 -2.4258 40 1 8.0730 1.4547 -3.5516 41 1 6.7242 0.4706 -5.3476 42 1 7.0292 -1.0938 -4.4727 43 1 3.4232 0.6654 -4.0107 44 1 4.6055 1.3262 -5.1656 45 1 2.7049 0.2633 -6.6447 46 1 0.7453 -0.2602 -9.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754476637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:24 Heat of formation + Delta-G solvation = -43.067341 kcal Electronic energy + Delta-G solvation = -26359.387259 eV Core-core repulsion = 22604.277466 eV Total energy + Delta-G solvation = -3755.109793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42578 -39.48382 -37.77284 -34.87070 -34.59343 -33.97515 -31.44920 -30.69903 -29.57370 -28.85176 -27.30311 -25.83054 -23.76189 -23.32342 -22.20533 -20.70235 -19.64158 -19.32532 -17.98294 -17.53617 -17.02250 -16.23231 -15.96430 -15.65851 -15.24230 -15.09395 -14.99667 -14.62738 -14.24604 -14.03880 -13.88846 -13.79631 -13.63928 -13.53830 -13.05506 -12.71913 -12.38146 -12.35321 -12.16442 -11.97635 -11.77122 -11.56275 -11.39583 -11.38016 -11.20504 -11.14377 -10.84581 -10.67310 -10.39986 -10.29156 -10.22208 -9.87257 -9.58745 -9.15266 -8.74418 -8.33805 -8.04486 -7.77816 -6.49501 -3.90378 1.34067 2.19910 2.52145 3.06629 3.10910 3.22327 3.29210 3.79405 3.83821 4.13428 4.39243 4.51383 4.54073 4.67741 4.74848 4.88007 4.92219 4.93722 4.95394 5.12523 5.15274 5.23233 5.32195 5.36183 5.42494 5.49191 5.54550 5.56892 5.68858 5.75619 5.80748 5.84285 5.88953 6.00789 6.12486 6.14667 6.23083 6.31955 6.53852 7.11002 7.33370 7.48232 7.97684 8.06366 8.52494 9.10332 9.45093 9.96349 10.68142 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003067 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.951893 B = 9126.636607 C =10828.378897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.099 4.099 3 C -0.085 4.085 4 H 0.105 0.895 5 S -0.197 6.197 6 C -0.131 4.131 7 C 0.510 3.490 8 O -0.522 6.522 9 N -0.716 5.716 10 C 0.145 3.855 11 C 0.005 3.995 12 H 0.083 0.917 13 C -0.136 4.136 14 C 0.022 3.978 15 N -0.445 5.445 16 C 0.009 3.991 17 C 0.441 3.559 18 O -0.576 6.576 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.401 0.599 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 10.090 14.031 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.217 4.217 4 H 0.123 0.877 5 S 0.030 5.970 6 C -0.300 4.300 7 C 0.292 3.708 8 O -0.397 6.397 9 N -0.369 5.369 10 C 0.021 3.979 11 C -0.105 4.105 12 H 0.101 0.899 13 C -0.175 4.175 14 C -0.107 4.107 15 N -0.168 5.168 16 C -0.123 4.123 17 C 0.226 3.774 18 O -0.460 6.460 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.236 0.764 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.311 8.496 15.990 18.254 hybrid contribution -0.140 1.200 -2.936 3.175 sum 2.171 9.696 13.054 16.405 Atomic orbital electron populations 1.21855 0.93939 1.02548 1.02803 1.21297 0.97422 0.90991 1.04078 1.23606 0.95383 1.02594 1.00107 0.87666 1.86690 1.80246 1.06491 1.23579 1.23455 1.04675 0.95827 1.06048 1.20478 0.90089 0.76714 0.83514 1.90737 1.63343 1.48612 1.37030 1.45922 1.08122 1.74708 1.08111 1.21283 0.79814 1.02201 0.94640 1.23921 0.96569 0.94759 0.95257 0.89902 1.23383 0.94843 0.99482 0.99758 1.23663 0.89596 1.02333 0.95076 1.68561 1.02991 1.25337 1.19905 1.22504 0.96834 0.97454 0.95485 1.19616 0.84521 0.89321 0.83903 1.90541 1.52399 1.29214 1.73820 1.41879 1.36822 1.15238 1.26020 1.19743 1.21845 0.94257 1.07013 0.87864 1.25259 0.96336 0.97955 0.98305 1.69609 1.27396 1.24581 1.32644 0.85809 0.78258 0.80875 0.79484 1.19188 1.20670 1.20735 0.91926 0.91344 0.92229 0.89692 0.90376 0.90391 0.90569 0.87995 0.76364 0.90604 0.91221 0.88888 0.90889 0.91498 0.88523 0.89899 0.92796 0.77570 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.16 0.36 -1.07 16 2 C -0.10 -1.05 5.38 -26.73 -0.14 -1.20 16 3 C -0.08 -0.91 2.60 -27.88 -0.07 -0.98 16 4 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 5 S -0.20 -2.19 19.86 -107.50 -2.14 -4.33 16 6 C -0.13 -1.15 10.61 101.05 1.07 -0.08 16 7 C 0.51 6.47 6.62 -10.99 -0.07 6.40 16 8 O -0.52 -8.29 16.14 5.56 0.09 -8.20 16 9 N -0.72 -8.19 5.50 -60.29 -0.33 -8.53 16 10 C 0.14 1.63 5.81 -4.04 -0.02 1.60 16 11 C 0.00 0.06 3.41 -66.46 -0.23 -0.17 16 12 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 13 C -0.14 -1.45 7.83 -25.80 -0.20 -1.65 16 14 C 0.02 0.32 6.60 -2.76 -0.02 0.30 16 15 N -0.44 -6.66 5.70 -231.86 -1.32 -7.98 16 16 C 0.01 0.15 5.14 -4.98 -0.03 0.13 16 17 C 0.44 9.86 7.48 -10.99 -0.08 9.77 16 18 O -0.58 -15.00 15.03 5.55 0.08 -14.91 16 19 N -0.56 -13.61 5.29 -10.96 -0.06 -13.67 16 20 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 21 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -23.75 13.05 55.50 0.72 -23.03 16 24 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.64 7.03 -51.93 -0.37 0.27 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.76 7.96 -51.93 -0.41 0.34 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.26 6.69 -40.82 -0.27 3.99 16 37 H 0.08 0.97 7.91 -51.93 -0.41 0.55 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.97 7.94 -51.93 -0.41 0.55 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.97 7.86 -51.93 -0.41 0.56 16 42 H 0.10 1.59 8.04 -51.93 -0.42 1.17 16 43 H 0.08 1.17 6.70 -51.93 -0.35 0.82 16 44 H 0.05 0.77 7.69 -51.93 -0.40 0.37 16 45 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 46 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -32.18 390.07 -9.25 -41.43 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.49 Total: 12.48 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 0.33 Total: 5.34 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.99 Total: -53.20 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.17 Total: -23.12 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.14 Total: -4.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.18 -9.25 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754476637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.637 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds