Wall clock time and date at job start Tue Mar 31 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 H 1.08992 * 109.47363 * 54.18065 * 3 2 1 5 5 S 1.81401 * 109.46885 * 294.17908 * 3 2 1 6 6 C 1.81396 * 102.99779 * 173.55811 * 5 3 2 7 7 C 1.50701 * 109.47156 * 174.18119 * 3 2 1 8 8 O 1.21284 * 119.99854 * 34.99805 * 7 3 2 9 9 N 1.34776 * 119.99980 * 215.00158 * 7 3 2 10 10 C 1.46495 * 120.00155 * 180.02562 * 9 7 3 11 11 C 1.53005 * 109.47396 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.74345 * 75.77130 * 11 10 9 13 13 C 1.53516 * 113.47561 * 206.61463 * 11 10 9 14 14 C 1.53520 * 83.56875 * 140.78979 * 13 11 10 15 15 N 1.47471 * 113.47445 * 304.99773 * 11 10 9 16 16 C 1.46900 * 111.00133 * 106.52980 * 15 11 10 17 17 C 1.50703 * 109.47317 * 190.00077 * 16 15 11 18 18 O 1.21291 * 119.99828 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99831 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99935 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99670 * 359.97438 * 20 19 17 22 22 C 1.38942 * 120.00327 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99767 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00238 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46922 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46943 * 120.00108 * 24 22 20 27 27 H 1.48500 * 109.47197 * 239.99719 * 24 22 20 28 28 H 1.09002 * 109.47146 * 305.86012 * 1 2 3 29 29 H 1.09005 * 109.47141 * 65.86169 * 1 2 3 30 30 H 1.09002 * 109.47116 * 185.85967 * 1 2 3 31 31 H 1.09000 * 109.47514 * 239.99427 * 2 1 3 32 32 H 1.09006 * 109.47388 * 119.99952 * 2 1 3 33 33 H 1.08996 * 109.47303 * 296.30968 * 6 5 3 34 34 H 1.09000 * 109.47275 * 56.31279 * 6 5 3 35 35 H 1.09008 * 109.47036 * 176.30804 * 6 5 3 36 36 H 0.97001 * 120.00173 * 359.97438 * 9 7 3 37 37 H 1.09004 * 109.47324 * 299.99479 * 10 9 7 38 38 H 1.09004 * 109.47541 * 59.99013 * 10 9 7 39 39 H 1.08993 * 114.16902 * 254.43446 * 13 11 10 40 40 H 1.08994 * 114.17217 * 27.14707 * 13 11 10 41 41 H 1.08999 * 113.46953 * 219.20704 * 14 13 11 42 42 H 1.09002 * 113.52936 * 88.75327 * 14 13 11 43 43 H 1.09007 * 109.46745 * 309.99823 * 16 15 11 44 44 H 1.08999 * 109.47570 * 69.99881 * 16 15 11 45 45 H 0.97000 * 120.00140 * 359.97438 * 19 17 16 46 46 H 0.96998 * 119.99623 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9855 0.8332 5 16 1.5810 2.2460 -1.5602 6 6 2.0853 3.9683 -1.2959 7 6 3.5401 1.4449 0.1440 8 8 4.1999 0.5656 -0.3682 9 7 4.1484 2.4242 0.8422 10 6 5.6067 2.4269 0.9818 11 6 6.0373 3.6369 1.8133 12 1 5.8427 3.5073 2.8779 13 6 7.4630 4.1150 1.5046 14 6 6.8440 5.5109 1.6627 15 7 5.5480 4.9212 1.2787 16 6 4.4599 5.4564 2.1078 17 6 3.8236 6.6286 1.4062 18 8 4.2363 6.9835 0.3223 19 7 2.7966 7.2830 1.9836 20 6 2.2173 8.3491 1.3451 21 1 2.5843 8.6646 0.3796 22 6 1.1582 9.0235 1.9401 23 7 0.7114 8.6391 3.1147 24 14 0.3695 10.4764 1.0704 25 1 1.0511 10.7051 -0.2289 26 1 -1.0677 10.1894 0.8312 27 1 0.4976 11.6894 1.9175 28 1 -0.3633 0.6020 0.8329 29 1 -0.3634 0.4203 -0.9378 30 1 -0.3633 -1.0223 0.1049 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5007 4.3973 -0.4821 34 1 3.1442 4.0016 -1.0395 35 1 1.9141 4.5410 -2.2075 36 1 3.6207 3.1276 1.2517 37 1 5.9258 1.5113 1.4798 38 1 6.0661 2.4825 -0.0051 39 1 8.1946 3.8617 2.2718 40 1 7.8006 3.8884 0.4933 41 1 7.2212 6.2371 0.9426 42 1 6.8654 5.8829 2.6871 43 1 3.7117 4.6804 2.2704 44 1 4.8607 5.7815 3.0678 45 1 2.4667 6.9993 2.8506 46 1 -0.0283 9.1097 3.5298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754476655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:28 Heat of formation + Delta-G solvation = -40.872216 kcal Electronic energy + Delta-G solvation = -26983.824537 eV Core-core repulsion = 23228.809932 eV Total energy + Delta-G solvation = -3755.014605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62130 -39.48726 -37.85377 -34.81628 -34.46873 -33.98730 -31.48387 -30.82191 -29.57868 -28.41530 -27.25912 -25.92496 -23.85399 -23.33208 -21.97300 -20.62887 -19.76485 -19.38133 -17.99660 -17.54092 -16.86301 -16.24860 -16.14781 -15.69275 -15.19166 -15.06783 -14.84312 -14.55459 -14.35081 -13.89343 -13.85086 -13.68445 -13.50495 -13.11994 -12.86626 -12.80740 -12.53567 -12.24626 -12.15869 -11.83302 -11.68323 -11.62217 -11.40801 -11.31625 -11.15636 -11.07433 -10.97317 -10.63749 -10.40572 -10.29651 -10.23059 -9.78006 -9.58967 -9.11168 -8.93256 -8.31503 -8.04712 -7.66530 -6.49768 -3.90794 1.38896 2.34223 2.93196 3.04515 3.10470 3.22208 3.28691 3.77560 3.83031 4.14578 4.32658 4.45560 4.54558 4.65151 4.87047 4.89292 4.93490 5.09009 5.19352 5.21359 5.28187 5.31903 5.35082 5.42025 5.46422 5.51545 5.55771 5.59062 5.68336 5.78900 5.81581 5.87112 5.98201 6.08460 6.10727 6.13832 6.17107 6.29310 6.45575 7.05153 7.37723 7.47865 7.97400 8.12381 8.52647 9.10503 9.44977 9.96697 10.67863 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009450 B = 0.004223 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.357852 B = 6629.294686 C = 8775.493767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.083 4.083 4 H 0.103 0.897 5 S -0.216 6.216 6 C -0.127 4.127 7 C 0.519 3.481 8 O -0.530 6.530 9 N -0.720 5.720 10 C 0.141 3.859 11 C 0.003 3.997 12 H 0.082 0.918 13 C -0.133 4.133 14 C 0.005 3.995 15 N -0.432 5.432 16 C 0.006 3.994 17 C 0.444 3.556 18 O -0.570 6.570 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.901 5.901 24 Si 0.927 3.073 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.390 0.610 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 -13.863 1.292 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.128 4.128 3 C -0.214 4.214 4 H 0.121 0.879 5 S 0.010 5.990 6 C -0.296 4.296 7 C 0.302 3.698 8 O -0.406 6.406 9 N -0.373 5.373 10 C 0.017 3.983 11 C -0.107 4.107 12 H 0.100 0.900 13 C -0.171 4.171 14 C -0.124 4.124 15 N -0.155 5.155 16 C -0.126 4.126 17 C 0.228 3.772 18 O -0.453 6.453 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.754 3.246 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.223 0.777 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.875 -14.525 -1.292 15.376 hybrid contribution -0.278 1.745 2.533 3.089 sum 4.597 -12.780 1.241 13.638 Atomic orbital electron populations 1.21843 0.94362 1.01867 1.03042 1.21171 0.96523 0.91210 1.03851 1.23425 0.95122 1.02621 1.00279 0.87926 1.86814 1.81408 1.08601 1.22146 1.23591 1.05538 0.93475 1.06974 1.20394 0.89557 0.81717 0.78135 1.90681 1.66087 1.36891 1.46965 1.46041 1.08384 1.28090 1.54804 1.21334 0.79856 0.96535 1.00548 1.23795 0.96424 0.92375 0.98154 0.89967 1.23155 0.94564 0.96240 1.03116 1.23752 0.90680 0.97282 1.00664 1.68857 1.01902 1.01430 1.43275 1.22589 0.95975 0.98252 0.95820 1.19579 0.83805 0.85988 0.87781 1.90547 1.64534 1.68459 1.21745 1.41886 1.29441 1.28676 1.20250 1.19721 1.12730 1.06271 1.04027 0.87896 1.25238 0.97167 0.99357 0.96024 1.69613 1.27438 1.41696 1.15528 0.85836 0.78827 0.80518 0.79425 1.19206 1.20689 1.20737 0.92419 0.91368 0.92272 0.89950 0.90622 0.89860 0.89383 0.87640 0.76476 0.91177 0.90656 0.90393 0.88508 0.89125 0.91358 0.90526 0.91991 0.77667 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.65 37.15 0.36 -1.09 16 2 C -0.09 -0.97 4.96 -26.73 -0.13 -1.11 16 3 C -0.08 -1.03 2.60 -27.88 -0.07 -1.10 16 4 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 5 S -0.22 -3.00 20.73 -107.50 -2.23 -5.23 16 6 C -0.13 -1.90 10.59 101.05 1.07 -0.83 16 7 C 0.52 7.30 6.48 -10.99 -0.07 7.22 16 8 O -0.53 -8.97 16.39 5.55 0.09 -8.88 16 9 N -0.72 -9.12 5.06 -60.29 -0.30 -9.43 16 10 C 0.14 1.66 5.81 -4.04 -0.02 1.63 16 11 C 0.00 0.03 3.23 -71.44 -0.23 -0.20 16 12 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 13 C -0.13 -1.29 8.00 -26.19 -0.21 -1.50 16 14 C 0.01 0.06 7.71 -7.55 -0.06 0.01 16 15 N -0.43 -6.27 5.39 -237.96 -1.28 -7.55 16 16 C 0.01 0.09 5.05 -4.97 -0.03 0.07 16 17 C 0.44 9.65 7.85 -10.98 -0.09 9.57 16 18 O -0.57 -14.59 16.01 5.55 0.09 -14.51 16 19 N -0.57 -13.35 5.29 -10.96 -0.06 -13.40 16 20 C -0.30 -7.91 9.68 -14.94 -0.14 -8.05 16 21 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -23.54 13.05 55.50 0.72 -22.82 16 24 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.70 7.38 -51.93 -0.38 0.31 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.43 7.55 -51.92 -0.39 1.04 16 35 H 0.11 1.55 8.14 -51.92 -0.42 1.12 16 36 H 0.40 4.95 6.20 -40.82 -0.25 4.70 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.96 7.94 -51.93 -0.41 0.54 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 0.79 7.42 -51.93 -0.39 0.41 16 43 H 0.08 1.05 6.27 -51.92 -0.33 0.72 16 44 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 45 H 0.39 8.83 7.90 -40.82 -0.32 8.51 16 46 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -31.43 390.38 -9.24 -40.66 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.40 Total: 14.72 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 0.28 Total: 5.14 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.92 Total: -53.20 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.18 Total: -23.38 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.23 Total: -5.23 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.43 -9.24 -40.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754476655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.211 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds