Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47048 * 2 1 4 4 H 1.08993 * 109.46930 * 305.57495 * 3 2 1 5 5 S 1.81401 * 109.46902 * 185.57676 * 3 2 1 6 6 C 1.81396 * 103.00240 * 67.16234 * 5 3 2 7 7 C 1.50701 * 109.46933 * 65.57531 * 3 2 1 8 8 O 1.21281 * 120.00070 * 34.99962 * 7 3 2 9 9 N 1.34771 * 119.99844 * 214.99895 * 7 3 2 10 10 C 1.46499 * 120.00327 * 180.02562 * 9 7 3 11 11 C 1.52992 * 109.47412 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.74938 * 284.22873 * 11 10 9 13 13 C 1.53517 * 113.47832 * 153.37731 * 11 10 9 14 14 C 1.53505 * 83.57782 * 219.20890 * 13 11 10 15 15 N 1.47479 * 113.47889 * 54.99935 * 11 10 9 16 16 C 1.46900 * 111.00187 * 253.47176 * 15 11 10 17 17 C 1.50699 * 109.47275 * 169.99734 * 16 15 11 18 18 O 1.21295 * 120.00041 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99950 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99706 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00277 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99661 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00413 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00001 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46735 * 60.00075 * 24 22 20 26 26 H 1.48494 * 109.46948 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46961 * 300.00208 * 24 22 20 28 28 H 1.09000 * 109.47117 * 294.54216 * 1 2 3 29 29 H 1.08997 * 109.46785 * 174.54519 * 1 2 3 30 30 H 1.08995 * 109.46872 * 54.53983 * 1 2 3 31 31 H 1.09002 * 109.47426 * 120.00181 * 2 1 3 32 32 H 1.09000 * 109.46999 * 240.00190 * 2 1 3 33 33 H 1.08994 * 109.47272 * 54.54934 * 6 5 3 34 34 H 1.09001 * 109.47136 * 174.54874 * 6 5 3 35 35 H 1.09003 * 109.47075 * 294.54689 * 6 5 3 36 36 H 0.97005 * 120.00183 * 0.02562 * 9 7 3 37 37 H 1.09003 * 109.46732 * 300.00113 * 10 9 7 38 38 H 1.09007 * 109.47133 * 59.99758 * 10 9 7 39 39 H 1.09002 * 114.16622 * 332.86118 * 13 11 10 40 40 H 1.09004 * 114.16899 * 105.55788 * 13 11 10 41 41 H 1.08994 * 113.47795 * 271.25476 * 14 13 11 42 42 H 1.08996 * 113.52978 * 140.79919 * 14 13 11 43 43 H 1.09000 * 109.46927 * 289.99536 * 16 15 11 44 44 H 1.08996 * 109.46954 * 49.99453 * 16 15 11 45 45 H 0.96995 * 119.99867 * 359.97438 * 19 17 16 46 46 H 0.96999 * 120.00534 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9843 -0.8358 5 16 3.8464 1.4452 -0.1662 6 6 4.1025 0.8129 -1.8470 7 6 1.6535 2.1119 1.2937 8 8 1.6330 1.4732 2.3245 9 7 1.3307 3.4204 1.3052 10 6 0.9556 4.0714 2.5628 11 6 0.6399 5.5451 2.2999 12 1 1.5357 6.1474 2.1478 13 6 -0.3409 6.1508 3.3138 14 6 -0.9091 6.8632 2.0785 15 7 -0.3887 5.7499 1.2632 16 6 0.2110 6.2453 0.0170 17 6 -0.8171 6.2093 -1.0842 18 8 -1.9392 5.8107 -0.8536 19 7 -0.4899 6.6211 -2.3252 20 6 -1.4254 6.5889 -3.3269 21 1 -2.4243 6.2332 -3.1218 22 6 -1.0880 7.0129 -4.6064 23 7 0.1276 7.4453 -4.8562 24 14 -2.3624 6.9684 -5.9715 25 1 -3.5150 7.8283 -5.6009 26 1 -1.7562 7.4698 -7.2310 27 1 -2.8291 5.5724 -6.1676 28 1 -0.3633 0.4269 0.9348 29 1 -0.3633 -1.0230 -0.0977 30 1 -0.3633 0.5962 -0.8370 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.5355 1.4190 -2.5535 34 1 5.1627 0.8613 -2.0958 35 1 3.7634 -0.2215 -1.9017 36 1 1.3468 3.9312 0.4806 37 1 0.0760 3.5795 2.9782 38 1 1.7813 3.9976 3.2706 39 1 -1.0207 5.4274 3.7640 40 1 0.1233 6.8183 4.0399 41 1 -0.4273 7.8179 1.8678 42 1 -1.9970 6.9309 2.0772 43 1 0.5535 7.2700 0.1610 44 1 1.0570 5.6142 -0.2549 45 1 0.4071 6.9410 -2.5093 46 1 0.3630 7.7417 -5.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754476663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -40.638020 kcal Electronic energy + Delta-G solvation = -26610.814282 eV Core-core repulsion = 22855.809832 eV Total energy + Delta-G solvation = -3755.004449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.57362 -39.51920 -37.80638 -34.81120 -34.38474 -33.94651 -31.43472 -30.74803 -29.17934 -29.11715 -27.26831 -25.87852 -23.80686 -23.47710 -22.09809 -20.42555 -19.66664 -19.33371 -17.95787 -17.75500 -16.70428 -16.26589 -16.06295 -15.68094 -15.23187 -15.16813 -14.65521 -14.45547 -14.21379 -13.98074 -13.92518 -13.79515 -13.67367 -13.26508 -12.95767 -12.87378 -12.62146 -12.48022 -12.06717 -11.86249 -11.64661 -11.57231 -11.54703 -11.34648 -11.09672 -11.02151 -10.91557 -10.57860 -10.48203 -10.25451 -10.14017 -9.84844 -9.53760 -9.05412 -8.87184 -8.26559 -8.01047 -7.90739 -6.46208 -3.87213 1.13661 2.24416 2.86567 3.10233 3.16113 3.22292 3.26471 3.82716 3.88582 4.17509 4.36122 4.42268 4.59118 4.71174 4.92785 4.93144 4.94732 4.95601 5.00026 5.14002 5.18227 5.27022 5.33002 5.34640 5.41044 5.50166 5.57684 5.61083 5.62416 5.73267 5.82019 5.85617 5.91963 6.04347 6.13426 6.18499 6.20232 6.35289 6.51844 7.11320 7.44125 7.50476 8.00807 8.15289 8.57001 9.13788 9.49134 10.01519 10.71361 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.008766 B = 0.003919 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.358740 B = 7143.213657 C = 9169.547382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.086 4.086 4 H 0.108 0.892 5 S -0.223 6.223 6 C -0.126 4.126 7 C 0.541 3.459 8 O -0.531 6.531 9 N -0.712 5.712 10 C 0.142 3.858 11 C 0.003 3.997 12 H 0.083 0.917 13 C -0.133 4.133 14 C 0.005 3.995 15 N -0.433 5.433 16 C 0.007 3.993 17 C 0.445 3.555 18 O -0.572 6.572 19 N -0.566 5.566 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.391 0.609 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.072 -7.466 10.253 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.218 4.218 4 H 0.126 0.874 5 S 0.004 5.996 6 C -0.295 4.295 7 C 0.324 3.676 8 O -0.408 6.408 9 N -0.364 5.364 10 C 0.018 3.982 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.171 4.171 14 C -0.124 4.124 15 N -0.155 5.155 16 C -0.126 4.126 17 C 0.229 3.771 18 O -0.455 6.455 19 N -0.203 5.203 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.224 0.776 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.740 -8.336 11.437 16.131 hybrid contribution -0.269 0.948 -2.337 2.537 sum 7.471 -7.387 9.100 13.899 Atomic orbital electron populations 1.21840 0.94570 1.02252 1.02707 1.21678 0.96852 0.92211 1.03583 1.23450 0.96265 1.01634 1.00413 0.87424 1.86967 1.05067 1.86978 1.20602 1.23505 1.06409 1.04083 0.95495 1.19486 0.76929 0.81949 0.89218 1.90685 1.52848 1.63833 1.33408 1.45894 1.68621 1.09770 1.12094 1.21341 1.00459 0.90688 0.85724 1.23791 0.96075 0.95961 0.94871 0.89865 1.23155 0.97980 0.99990 0.95959 1.23751 1.02844 0.93597 0.92227 1.68861 1.18436 1.29053 0.99158 1.22576 0.97360 0.99670 0.92957 1.19613 0.89192 0.84791 0.83470 1.90541 1.21920 1.50826 1.82190 1.41869 1.14071 1.56919 1.07450 1.19633 0.94869 1.40577 0.87781 0.88036 1.25237 0.97067 0.96952 0.98555 1.69597 1.18485 1.43437 1.22848 0.85941 0.80117 0.78833 0.79490 1.19899 1.20953 1.19910 0.92081 0.92022 0.92298 0.89489 0.91229 0.89870 0.87731 0.90164 0.76105 0.90647 0.91149 0.88538 0.90390 0.91363 0.89160 0.91965 0.90245 0.77596 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.64 37.16 0.36 -1.46 16 2 C -0.10 -1.18 5.14 -26.73 -0.14 -1.32 16 3 C -0.09 -1.07 2.63 -27.88 -0.07 -1.14 16 4 H 0.11 1.29 8.11 -51.93 -0.42 0.87 16 5 S -0.22 -2.63 21.76 -107.50 -2.34 -4.97 16 6 C -0.13 -1.08 10.41 101.05 1.05 -0.02 16 7 C 0.54 7.81 5.98 -10.99 -0.07 7.75 16 8 O -0.53 -9.03 15.99 5.56 0.09 -8.94 16 9 N -0.71 -9.56 5.46 -60.30 -0.33 -9.89 16 10 C 0.14 1.74 5.81 -4.05 -0.02 1.72 16 11 C 0.00 0.04 3.23 -71.43 -0.23 -0.19 16 12 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 13 C -0.13 -1.34 8.00 -26.20 -0.21 -1.55 16 14 C 0.00 0.06 7.71 -7.55 -0.06 0.00 16 15 N -0.43 -6.59 5.39 -237.95 -1.28 -7.87 16 16 C 0.01 0.11 5.05 -4.98 -0.03 0.08 16 17 C 0.44 10.09 7.85 -10.98 -0.09 10.00 16 18 O -0.57 -15.26 16.01 5.54 0.09 -15.17 16 19 N -0.57 -13.80 5.29 -10.96 -0.06 -13.86 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 21 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 24 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H 0.06 0.82 7.44 -51.93 -0.39 0.44 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 32 H 0.07 0.66 6.98 -51.93 -0.36 0.30 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.08 0.60 7.32 -51.92 -0.38 0.22 16 36 H 0.40 5.36 6.20 -40.82 -0.25 5.11 16 37 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 38 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 39 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.82 7.42 -51.93 -0.39 0.44 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 44 H 0.08 1.15 6.27 -51.93 -0.33 0.82 16 45 H 0.39 9.09 7.90 -40.82 -0.32 8.76 16 46 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -32.63 389.23 -9.32 -41.95 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -7.31 Total: 14.31 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 0.26 Total: 6.11 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.94 Total: -54.78 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.18 Total: -24.11 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.34 Total: -4.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.63 -9.32 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754476663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.314 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds