Wall clock time and date at job start Tue Mar 31 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 H 1.08997 * 109.47522 * 305.84315 * 3 2 1 5 5 S 1.81410 * 109.47029 * 65.83891 * 3 2 1 6 6 C 1.81400 * 103.00137 * 186.57824 * 5 3 2 7 7 C 1.50699 * 109.47465 * 185.84103 * 3 2 1 8 8 O 1.21286 * 119.99589 * 265.00112 * 7 3 2 9 9 N 1.34767 * 120.00248 * 84.99890 * 7 3 2 10 10 C 1.46502 * 120.00434 * 180.02562 * 9 7 3 11 11 C 1.52999 * 109.47542 * 180.02562 * 10 9 7 12 12 H 1.09005 * 112.74062 * 284.23257 * 11 10 9 13 13 C 1.53509 * 113.47598 * 153.38085 * 11 10 9 14 14 C 1.53510 * 83.57241 * 219.20918 * 13 11 10 15 15 N 1.47474 * 87.93470 * 26.02468 * 14 13 11 16 16 C 1.46900 * 111.00392 * 221.29245 * 15 14 13 17 17 C 1.50695 * 109.47261 * 265.97507 * 16 15 14 18 18 O 1.21289 * 120.00132 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00026 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00175 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99880 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99783 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99692 * 179.97438 * 22 20 19 24 24 Si 1.86791 * 120.00373 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47154 * 89.99972 * 24 22 20 26 26 H 1.48503 * 109.47404 * 210.00213 * 24 22 20 27 27 H 1.48498 * 109.47317 * 330.00217 * 24 22 20 28 28 H 1.09006 * 109.46703 * 174.42821 * 1 2 3 29 29 H 1.09007 * 109.47226 * 294.41685 * 1 2 3 30 30 H 1.08991 * 109.47844 * 54.42635 * 1 2 3 31 31 H 1.09002 * 109.47355 * 240.00661 * 2 1 3 32 32 H 1.09000 * 109.47490 * 120.00135 * 2 1 3 33 33 H 1.09001 * 109.46983 * 304.67375 * 6 5 3 34 34 H 1.09002 * 109.46755 * 64.67424 * 6 5 3 35 35 H 1.08999 * 109.47200 * 184.67410 * 6 5 3 36 36 H 0.97008 * 119.99643 * 0.02562 * 9 7 3 37 37 H 1.09003 * 109.46602 * 59.99899 * 10 9 7 38 38 H 1.08996 * 109.46983 * 300.00727 * 10 9 7 39 39 H 1.08998 * 114.17500 * 332.86032 * 13 11 10 40 40 H 1.09008 * 114.16709 * 105.56678 * 13 11 10 41 41 H 1.09003 * 113.48109 * 271.25322 * 14 13 11 42 42 H 1.09004 * 113.53048 * 140.80055 * 14 13 11 43 43 H 1.09003 * 109.46943 * 25.97360 * 16 15 14 44 44 H 1.08995 * 109.46915 * 145.96696 * 16 15 14 45 45 H 0.97006 * 120.00371 * 359.97438 * 19 17 16 46 46 H 0.96995 * 120.00211 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 16 1.5814 2.2459 1.5605 6 6 2.0817 3.9692 1.2947 7 6 3.5399 1.4451 -0.1446 8 8 4.2440 1.5022 0.8413 9 7 4.0990 1.3841 -1.3693 10 6 5.5573 1.3861 -1.5099 11 6 5.9269 1.3108 -2.9926 12 1 5.7951 0.3123 -3.4096 13 6 7.2920 1.9344 -3.3150 14 6 6.5692 2.4454 -4.5692 15 7 5.3088 2.3738 -3.8069 16 6 4.2217 1.8369 -4.6363 17 6 3.4585 2.9753 -5.2627 18 8 3.7875 4.1213 -5.0398 19 7 2.4104 2.7202 -6.0706 20 6 1.7157 3.7559 -6.6401 21 1 2.0082 4.7763 -6.4410 22 6 0.6348 3.4928 -7.4726 23 7 -0.0313 4.4856 -8.0181 24 14 0.1285 1.7280 -7.8165 25 1 -0.8645 1.2913 -6.8023 26 1 -0.4756 1.6411 -9.1703 27 1 1.3232 0.8484 -7.7502 28 1 -0.3633 -1.0229 -0.0998 29 1 -0.3634 0.4248 0.9358 30 1 -0.3634 0.5978 -0.8358 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.1359 4.0032 1.0197 34 1 1.4829 4.4018 0.4932 35 1 1.9268 4.5381 2.2115 36 1 3.5358 1.3388 -2.1578 37 1 5.9738 0.5251 -0.9870 38 1 5.9623 2.3025 -1.0808 39 1 7.5979 2.7205 -2.6246 40 1 8.0782 1.2071 -3.5182 41 1 6.6099 1.7500 -5.4075 42 1 6.8498 3.4606 -4.8499 43 1 4.6404 1.2055 -5.4199 44 1 3.5484 1.2464 -4.0149 45 1 2.1474 1.8037 -6.2492 46 1 -0.7857 4.3020 -8.5995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754476665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:38 Heat of formation + Delta-G solvation = -31.434555 kcal Electronic energy + Delta-G solvation = -26699.487966 eV Core-core repulsion = 22944.882608 eV Total energy + Delta-G solvation = -3754.605357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69062 -39.52713 -38.03236 -34.89444 -34.59963 -34.02100 -31.80862 -31.01801 -29.53419 -28.75496 -27.30762 -26.05728 -23.67669 -23.32002 -22.23934 -20.69854 -19.83806 -19.47606 -18.45562 -17.51588 -16.99721 -16.31138 -15.97193 -15.56757 -15.42699 -15.20411 -14.98332 -14.85665 -14.46564 -14.01145 -13.93719 -13.61034 -13.43878 -13.31656 -13.02556 -12.77259 -12.68810 -12.39929 -12.28639 -12.22298 -12.02901 -11.72329 -11.52219 -11.41549 -11.25292 -11.23197 -11.04868 -10.70269 -10.66296 -10.16905 -10.04289 -9.84250 -9.63707 -9.15485 -9.00951 -8.43226 -8.24976 -7.68440 -6.37344 -3.89241 1.44027 2.28127 2.59685 2.94700 2.99271 3.05070 3.08943 3.62566 3.76517 4.03317 4.24948 4.47052 4.50311 4.55990 4.68602 4.77451 4.85178 5.02704 5.06834 5.12676 5.14598 5.16356 5.20264 5.23536 5.25293 5.39403 5.46684 5.50030 5.61328 5.70214 5.72017 5.73937 5.77103 5.83747 5.87083 6.03088 6.07948 6.21860 6.39262 6.95785 7.34060 7.50812 8.06926 8.08286 8.53059 8.88735 9.35062 9.75818 10.75793 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.008935 B = 0.004070 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.861781 B = 6877.628465 C = 8738.031091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C -0.089 4.089 4 H 0.109 0.891 5 S -0.200 6.200 6 C -0.130 4.130 7 C 0.512 3.488 8 O -0.522 6.522 9 N -0.717 5.717 10 C 0.142 3.858 11 C 0.003 3.997 12 H 0.083 0.917 13 C -0.132 4.132 14 C 0.004 3.996 15 N -0.433 5.433 16 C 0.004 3.996 17 C 0.453 3.547 18 O -0.553 6.553 19 N -0.592 5.592 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.271 1.271 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.369 0.631 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -12.425 12.727 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 C -0.221 4.221 4 H 0.127 0.873 5 S 0.027 5.973 6 C -0.299 4.299 7 C 0.294 3.706 8 O -0.398 6.398 9 N -0.369 5.369 10 C 0.017 3.983 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.171 4.171 14 C -0.125 4.125 15 N -0.155 5.155 16 C -0.129 4.129 17 C 0.238 3.762 18 O -0.434 6.434 19 N -0.232 5.232 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.705 3.295 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.196 1.196 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.201 0.799 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.938 -11.332 14.662 19.787 hybrid contribution -0.115 -1.521 -2.571 2.990 sum 6.823 -12.853 12.091 18.920 Atomic orbital electron populations 1.21841 0.93875 1.02157 1.03250 1.21257 0.97508 0.91231 1.03401 1.23622 0.95413 1.02302 1.00759 0.87303 1.86517 1.80230 1.07523 1.23000 1.23478 1.04977 0.95224 1.06185 1.20470 0.90134 0.76565 0.83440 1.90733 1.63113 1.48601 1.37338 1.45919 1.08062 1.74850 1.08105 1.21336 0.80023 1.02453 0.94448 1.23798 0.96043 0.96071 0.94765 0.89918 1.23154 0.94870 1.00589 0.98440 1.23773 0.90228 1.03047 0.95425 1.68866 1.02300 1.30330 1.14040 1.22614 0.96024 0.96911 0.97307 1.19492 0.83254 0.89854 0.83642 1.90584 1.68143 1.21792 1.62851 1.42226 1.28852 1.08146 1.43989 1.19411 1.09532 0.89768 1.24686 0.86316 1.25031 0.96432 0.97753 0.96855 1.69616 1.20279 1.30768 1.31325 0.86696 0.79193 0.84413 0.79196 1.19562 1.20120 1.19627 0.92137 0.91343 0.92004 0.90419 0.90420 0.90207 0.90185 0.87982 0.76356 0.91151 0.90709 0.88460 0.90316 0.91309 0.88987 0.91844 0.90199 0.79857 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.65 37.16 0.36 -1.01 16 2 C -0.10 -0.92 5.37 -26.73 -0.14 -1.06 16 3 C -0.09 -1.04 2.60 -27.88 -0.07 -1.11 16 4 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 5 S -0.20 -2.50 20.05 -107.50 -2.16 -4.65 16 6 C -0.13 -1.51 10.60 101.05 1.07 -0.44 16 7 C 0.51 6.83 6.58 -10.99 -0.07 6.76 16 8 O -0.52 -8.52 16.14 5.55 0.09 -8.43 16 9 N -0.72 -8.57 5.46 -60.30 -0.33 -8.90 16 10 C 0.14 1.57 5.82 -4.04 -0.02 1.55 16 11 C 0.00 0.04 3.23 -71.45 -0.23 -0.20 16 12 H 0.08 0.71 7.91 -51.93 -0.41 0.30 16 13 C -0.13 -1.22 8.00 -26.20 -0.21 -1.43 16 14 C 0.00 0.05 7.71 -7.57 -0.06 -0.01 16 15 N -0.43 -6.11 5.39 -237.99 -1.28 -7.39 16 16 C 0.00 0.06 5.05 -4.98 -0.03 0.03 16 17 C 0.45 9.73 7.85 -10.99 -0.09 9.64 16 18 O -0.55 -14.48 16.01 5.55 0.09 -14.39 16 19 N -0.59 -13.40 5.09 -10.97 -0.06 -13.45 16 20 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 21 H 0.12 3.76 7.39 -52.49 -0.39 3.38 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.17 13.96 55.50 0.77 -24.40 16 24 Si 0.88 18.64 27.74 -169.99 -4.71 13.93 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.64 7.37 -51.93 -0.38 0.26 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.03 7.93 -51.92 -0.41 0.62 16 34 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.10 1.01 8.14 -51.92 -0.42 0.58 16 36 H 0.40 4.59 6.22 -40.82 -0.25 4.34 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 39 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 40 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 41 H 0.07 0.75 7.42 -51.93 -0.39 0.37 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 0.81 7.30 -51.93 -0.38 0.43 16 44 H 0.08 0.98 6.27 -51.93 -0.33 0.66 16 45 H 0.37 7.24 5.76 -40.82 -0.24 7.01 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -34.05 387.80 -8.87 -42.92 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -7.39 Total: 13.69 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 0.26 Total: 5.24 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.89 Total: -54.15 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.18 Total: -22.82 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.71 Total: 13.93 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.16 Total: -4.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.05 -8.87 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754476665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.483 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds