Wall clock time and date at job start Tue Mar 31 2020 04:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48493 * 109.46808 * 269.99354 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.99354 * 3 2 1 6 6 H 1.48502 * 109.46772 * 149.99374 * 3 2 1 7 7 C 1.38948 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99766 * 179.72663 * 7 2 1 9 9 N 1.37096 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00107 * 179.71991 * 9 7 2 11 11 O 1.21297 * 119.99821 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00075 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47030 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99889 * 174.70650 * 13 12 10 15 15 C 1.52996 * 115.54868 * 279.56145 * 14 13 12 16 16 N 1.46504 * 109.47086 * 325.03103 * 15 14 13 17 17 C 1.34774 * 119.99813 * 174.86820 * 16 15 14 18 18 O 1.21279 * 120.00370 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00238 * 180.02562 * 17 16 15 20 20 F 1.39909 * 110.74974 * 57.01582 * 19 17 16 21 21 C 1.55298 * 110.85197 * 180.71383 * 19 17 16 22 22 C 1.54948 * 100.94026 * 152.32380 * 21 19 17 23 23 O 1.43639 * 105.13855 * 323.55515 * 22 21 19 24 24 C 1.43241 * 109.96915 * 24.42728 * 23 22 21 25 25 C 1.52998 * 117.50013 * 133.85308 * 14 13 12 26 26 C 1.52994 * 60.00011 * 252.51230 * 25 14 13 27 27 H 0.97001 * 120.00213 * 0.02562 * 1 2 3 28 28 H 0.96991 * 119.99919 * 359.72628 * 9 7 2 29 29 H 1.08993 * 109.47566 * 300.00458 * 12 10 9 30 30 H 1.09006 * 109.47067 * 60.00585 * 12 10 9 31 31 H 1.00904 * 111.00090 * 298.65617 * 13 12 10 32 32 H 1.08998 * 109.47451 * 85.03585 * 15 14 13 33 33 H 1.09005 * 109.46838 * 205.03764 * 15 14 13 34 34 H 0.96994 * 120.00001 * 354.87120 * 16 15 14 35 35 H 1.09002 * 111.12590 * 270.24361 * 21 19 17 36 36 H 1.09000 * 111.12507 * 34.40278 * 21 19 17 37 37 H 1.09003 * 110.30931 * 204.63918 * 22 21 19 38 38 H 1.08998 * 110.31199 * 82.47594 * 22 21 19 39 39 H 1.08997 * 109.83044 * 238.77261 * 24 23 22 40 40 H 1.09007 * 109.89933 * 117.84866 * 24 23 22 41 41 H 1.09005 * 117.49620 * 359.97438 * 25 14 13 42 42 H 1.08995 * 117.50385 * 145.02254 * 25 14 13 43 43 H 1.09009 * 117.49713 * 252.51282 * 26 25 14 44 44 H 1.09003 * 117.52119 * 107.48163 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4455 2.6528 0.6999 6 1 3.5456 1.4402 0.7002 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 -0.0039 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 -0.0046 11 8 3.2102 -3.5578 -0.0088 12 6 1.2438 -4.8629 -0.0041 13 7 2.1984 -5.9795 -0.0097 14 6 1.5030 -7.2673 0.1172 15 6 1.0901 -7.6570 1.5379 16 7 2.1010 -7.1846 2.4872 17 6 1.8982 -7.3236 3.8123 18 8 0.8790 -7.8401 4.2189 19 6 2.9378 -6.8373 4.7889 20 9 3.2004 -5.4766 4.5966 21 6 2.4969 -7.1183 6.2512 22 6 3.8721 -7.2437 6.9541 23 8 4.7239 -7.8950 5.9983 24 6 4.2332 -7.6687 4.6717 25 6 1.9215 -8.3926 -0.8311 26 6 0.5784 -7.6866 -1.0274 27 1 -0.4850 0.8400 -0.0004 28 1 0.3535 -2.3906 0.0042 29 1 0.6208 -4.9225 0.8883 30 1 0.6134 -4.9189 -0.8916 31 1 2.7736 -5.9593 -0.8385 32 1 0.1285 -7.2016 1.7746 33 1 1.0054 -8.7415 1.6070 34 1 2.9163 -6.7718 2.1620 35 1 1.9235 -6.2843 6.6559 36 1 1.9343 -8.0494 6.3199 37 1 3.7824 -7.8497 7.8557 38 1 4.2635 -6.2562 7.1986 39 1 4.0183 -8.6222 4.1893 40 1 4.9741 -7.1193 4.0908 41 1 2.7126 -8.1773 -1.5495 42 1 1.9028 -9.4109 -0.4430 43 1 -0.3239 -8.2406 -0.7682 44 1 0.4858 -7.0068 -1.8744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754522106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:54 Heat of formation + Delta-G solvation = -130.027334 kcal Electronic energy + Delta-G solvation = -28837.291420 eV Core-core repulsion = 24512.197583 eV Total energy + Delta-G solvation = -4325.093837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.158 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.06273 -40.23546 -39.23003 -38.51829 -37.77456 -34.42142 -34.02723 -32.64070 -32.09965 -31.20546 -29.93367 -27.33273 -26.58692 -24.14579 -23.70354 -22.71751 -22.50930 -20.40927 -19.86310 -19.24444 -18.15944 -17.90439 -17.29626 -16.72727 -16.36034 -15.94348 -15.58203 -15.48976 -15.18650 -14.96399 -14.83403 -14.49221 -14.31468 -14.18285 -13.94627 -13.87191 -13.39602 -13.32458 -13.00724 -12.50508 -12.41437 -12.25991 -12.04746 -11.84578 -11.78418 -11.62801 -11.50263 -11.17874 -11.09404 -10.90076 -10.40660 -10.30168 -10.21491 -10.04868 -9.88538 -9.52717 -9.17391 -8.55743 -8.21001 -7.98612 -6.43414 -3.84384 2.20644 2.74169 3.16655 3.25663 3.31448 3.37470 3.48528 3.67289 3.86638 3.93012 4.03011 4.21112 4.35489 4.45512 4.50364 4.62454 4.65924 4.73712 4.86300 5.08575 5.22440 5.23190 5.33845 5.37274 5.42479 5.45204 5.51360 5.52118 5.55784 5.66744 5.71956 5.76803 5.88309 5.90474 6.18547 6.24872 6.49366 7.01094 7.33551 7.43151 7.53575 7.92780 8.03612 8.58363 9.15745 9.51601 10.02429 10.74211 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.003532 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.795891 B = 7924.763414 C = 9829.432827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.629 5.629 14 C 0.033 3.967 15 C 0.169 3.831 16 N -0.696 5.696 17 C 0.509 3.491 18 O -0.529 6.529 19 C 0.068 3.932 20 F -0.172 7.172 21 C -0.159 4.159 22 C 0.049 3.951 23 O -0.373 6.373 24 C 0.041 3.959 25 C -0.168 4.168 26 C -0.202 4.202 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.355 0.645 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.420 0.580 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 -18.156 5.853 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.079 4.079 13 N -0.261 5.261 14 C -0.060 4.060 15 C 0.045 3.955 16 N -0.348 5.348 17 C 0.292 3.708 18 O -0.406 6.406 19 C 0.046 3.954 20 F -0.152 7.152 21 C -0.197 4.197 22 C -0.027 4.027 23 O -0.292 6.292 24 C -0.037 4.037 25 C -0.206 4.206 26 C -0.242 4.242 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.176 0.824 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.258 0.742 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.006 -18.349 6.836 19.684 hybrid contribution -0.551 1.379 -1.287 1.965 sum 1.455 -16.970 5.549 17.913 Atomic orbital electron populations 1.69613 1.05957 1.28200 1.50459 1.25265 0.95623 0.99741 0.97242 0.85860 0.79301 0.80798 0.78361 1.20427 1.20894 1.19352 1.19697 0.93363 0.82184 1.47664 0.87893 1.41846 1.09195 1.04604 1.64170 1.19735 0.88373 0.84601 0.84732 1.90527 1.13613 1.87047 1.55488 1.21661 0.94157 0.90528 1.01521 1.59704 1.21134 0.98347 1.46884 1.21882 1.01449 0.91659 0.91027 1.20780 0.91585 0.98706 0.84454 1.45821 1.23943 1.60426 1.04597 1.20228 0.87251 0.79966 0.83361 1.90721 1.27252 1.44118 1.78511 1.22614 0.96249 0.79283 0.97262 1.93030 1.94741 1.31336 1.96112 1.23732 0.99005 1.06089 0.90868 1.23514 0.87924 0.98506 0.92772 1.88437 1.51343 1.74961 1.14470 1.23725 0.93323 1.00010 0.86631 1.23331 0.98477 0.96871 1.01887 1.23545 0.94835 1.04510 1.01321 0.91846 0.77505 0.89671 0.93448 0.82404 0.90678 0.90726 0.74193 0.87881 0.87160 0.88544 0.91134 0.89186 0.88678 0.88215 0.88015 0.88233 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.10 5.29 -10.96 -0.06 -14.15 16 10 C 0.44 10.09 7.83 -10.99 -0.09 10.00 16 11 O -0.58 -15.24 15.89 5.54 0.09 -15.16 16 12 C 0.05 0.90 5.95 -4.98 -0.03 0.87 16 13 N -0.63 -8.94 5.16 -101.22 -0.52 -9.47 16 14 C 0.03 0.36 2.12 -131.60 -0.28 0.08 16 15 C 0.17 1.92 5.73 -4.04 -0.02 1.90 16 16 N -0.70 -8.71 5.40 -60.29 -0.33 -9.04 16 17 C 0.51 6.87 6.77 -10.99 -0.07 6.80 16 18 O -0.53 -8.24 15.70 5.56 0.09 -8.16 16 19 C 0.07 0.83 1.45 -89.83 -0.13 0.70 16 20 F -0.17 -2.59 16.97 2.25 0.04 -2.55 16 21 C -0.16 -1.64 6.09 -24.48 -0.15 -1.79 16 22 C 0.05 0.45 7.78 38.19 0.30 0.75 16 23 O -0.37 -4.26 11.36 -35.23 -0.40 -4.66 16 24 C 0.04 0.43 7.21 37.88 0.27 0.71 16 25 C -0.17 -1.45 9.87 -26.74 -0.26 -1.72 16 26 C -0.20 -1.88 9.67 -26.74 -0.26 -2.14 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 29 H 0.09 1.41 8.00 -51.93 -0.42 1.00 16 30 H 0.05 0.72 7.64 -51.93 -0.40 0.32 16 31 H 0.36 5.13 8.39 -39.29 -0.33 4.80 16 32 H 0.08 0.94 8.13 -51.93 -0.42 0.51 16 33 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 34 H 0.42 5.44 7.75 -40.82 -0.32 5.12 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.12 7.38 -51.93 -0.38 0.74 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.83 7.81 -51.93 -0.41 0.43 16 40 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 43 H 0.10 0.82 8.14 -51.92 -0.42 0.39 16 44 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -32.47 376.41 -6.96 -39.43 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -6.27 Total: 17.63 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -0.96 Total: 8.22 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.18 Total: -56.44 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.22 Total: -27.97 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.47 -6.96 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754522106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.598 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds