Wall clock time and date at job start Tue Mar 31 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 119.99700 * 2 1 4 4 H 1.48495 * 109.47247 * 239.99531 * 3 2 1 5 5 H 1.48500 * 109.47418 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46769 * 119.99949 * 3 2 1 7 7 C 1.38949 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00221 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00036 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99798 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99977 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99886 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47207 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00145 * 179.59542 * 13 12 10 15 15 C 1.53002 * 115.54942 * 294.62745 * 14 13 12 16 16 N 1.46500 * 109.47084 * 279.61547 * 15 14 13 17 17 C 1.34778 * 119.99631 * 175.59317 * 16 15 14 18 18 O 1.21278 * 120.00069 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99849 * 179.97438 * 17 16 15 20 20 F 1.39906 * 111.02161 * 307.23120 * 19 17 16 21 21 C 1.55567 * 111.22791 * 182.92408 * 19 17 16 22 22 C 1.54382 * 102.27766 * 207.98456 * 21 19 17 23 23 O 1.43239 * 107.58762 * 21.35101 * 22 21 19 24 24 C 1.43642 * 109.97032 * 1.71616 * 23 22 21 25 25 C 1.53003 * 117.51650 * 80.32778 * 14 13 12 26 26 C 1.53002 * 117.49865 * 148.95844 * 14 13 12 27 27 H 0.96992 * 120.00052 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00140 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46855 * 59.99849 * 12 10 9 30 30 H 1.09005 * 109.47141 * 300.00121 * 12 10 9 31 31 H 1.00904 * 111.00208 * 303.55122 * 13 12 10 32 32 H 1.09004 * 109.47010 * 159.61222 * 15 14 13 33 33 H 1.09002 * 109.46933 * 39.61732 * 15 14 13 34 34 H 0.96996 * 120.00191 * 355.58839 * 16 15 14 35 35 H 1.09001 * 110.83644 * 89.78297 * 21 19 17 36 36 H 1.09004 * 111.00925 * 326.25850 * 21 19 17 37 37 H 1.08999 * 109.82672 * 261.84201 * 22 21 19 38 38 H 1.08997 * 109.82975 * 140.87192 * 22 21 19 39 39 H 1.09002 * 110.31132 * 94.48887 * 24 23 22 40 40 H 1.09003 * 110.30779 * 216.55034 * 24 23 22 41 41 H 1.08998 * 117.49896 * 214.96913 * 25 14 13 42 42 H 1.08992 * 117.49590 * 359.97438 * 25 14 13 43 43 H 1.08995 * 117.49847 * 359.97438 * 26 14 13 44 44 H 1.08993 * 117.49881 * 144.99754 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5579 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0011 13 7 2.1985 -5.9795 0.0004 14 6 1.4983 -7.2708 0.0106 15 6 0.6858 -7.5709 1.2719 16 7 1.5815 -8.0511 2.3270 17 6 1.0987 -8.2948 3.5615 18 8 -0.0772 -8.1163 3.7989 19 6 2.0199 -8.7893 4.6468 20 9 2.7280 -9.9206 4.2272 21 6 1.2395 -9.0721 5.9625 22 6 2.3193 -8.8397 7.0411 23 8 3.3391 -8.0169 6.4624 24 6 2.9831 -7.6695 5.1148 25 6 0.9527 -7.7897 -1.3214 26 6 2.1795 -8.4494 -0.6880 27 1 -0.4850 0.8400 0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6169 -4.9209 -0.8886 30 1 0.6175 -4.9205 0.8914 31 1 2.8286 -5.9161 -0.7852 32 1 -0.0586 -8.3360 1.0510 33 1 0.1848 -6.6624 1.6060 34 1 2.5220 -8.1936 2.1372 35 1 0.8815 -10.1013 5.9874 36 1 0.4125 -8.3725 6.0844 37 1 2.7452 -9.7944 7.3496 38 1 1.8800 -8.3342 7.9011 39 1 2.4789 -6.7034 5.0937 40 1 3.8712 -7.6458 4.4831 41 1 0.0150 -8.3449 -1.2991 42 1 1.1130 -7.1726 -2.2054 43 1 3.1469 -8.2664 -1.1556 44 1 2.0487 -9.4384 -0.2492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754522107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:58 Heat of formation + Delta-G solvation = -131.390457 kcal Electronic energy + Delta-G solvation = -28393.091146 eV Core-core repulsion = 24067.938200 eV Total energy + Delta-G solvation = -4325.152946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.30250 -40.34075 -39.26551 -38.58745 -37.80602 -34.53541 -34.03259 -32.68338 -32.23453 -31.22421 -29.98965 -27.44183 -26.59620 -24.12566 -23.84810 -22.82433 -22.46005 -20.54355 -19.92355 -19.29348 -18.33337 -17.93124 -17.44328 -16.59850 -16.41460 -16.05112 -15.90094 -15.45207 -15.35769 -15.23953 -14.81498 -14.53919 -14.41324 -14.16138 -14.08841 -13.91103 -13.40304 -13.29914 -12.87926 -12.62421 -12.54897 -12.26813 -12.04265 -11.97799 -11.77872 -11.71518 -11.52693 -11.37962 -11.11180 -10.92012 -10.46874 -10.42985 -10.24117 -10.08497 -9.93543 -9.53595 -9.34637 -8.50055 -8.16196 -8.00169 -6.44800 -3.86057 2.07457 2.53869 3.17978 3.24253 3.27979 3.29556 3.46950 3.60535 3.84453 3.89087 3.98985 4.20651 4.27335 4.32542 4.37460 4.53585 4.55949 4.74694 4.75552 5.05799 5.21536 5.22608 5.27324 5.33226 5.36160 5.38983 5.43091 5.47409 5.57206 5.61024 5.68856 5.77624 5.88294 5.91471 6.07995 6.20539 6.46079 7.03694 7.12456 7.46477 7.51957 7.75419 8.01832 8.56696 9.13950 9.49783 10.00599 10.72690 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.002863 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.714612 B = 9777.145266 C =11203.523938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.439 3.561 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.626 5.626 14 C 0.034 3.966 15 C 0.165 3.835 16 N -0.701 5.701 17 C 0.511 3.489 18 O -0.521 6.521 19 C 0.066 3.934 20 F -0.179 7.179 21 C -0.158 4.158 22 C 0.049 3.951 23 O -0.370 6.370 24 C 0.043 3.957 25 C -0.204 4.204 26 C -0.166 4.166 27 H 0.273 0.727 28 H 0.392 0.608 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.355 0.645 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.410 0.590 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 -20.445 5.944 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.258 5.258 14 C -0.059 4.059 15 C 0.041 3.959 16 N -0.352 5.352 17 C 0.294 3.706 18 O -0.397 6.397 19 C 0.044 3.956 20 F -0.160 7.160 21 C -0.197 4.197 22 C -0.027 4.027 23 O -0.289 6.289 24 C -0.034 4.034 25 C -0.244 4.244 26 C -0.203 4.203 27 H 0.083 0.917 28 H 0.226 0.774 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.176 0.824 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.033 -20.046 6.884 21.196 hybrid contribution -0.269 0.581 -1.280 1.431 sum -0.302 -19.465 5.604 20.258 Atomic orbital electron populations 1.69602 1.05953 1.28363 1.50243 1.25270 0.95633 0.99758 0.97172 0.85913 0.78777 0.80406 0.79106 1.19896 1.20943 1.19829 1.19654 0.93346 0.82199 1.47905 0.87943 1.41847 1.09225 1.04580 1.64063 1.19734 0.88348 0.84645 0.84797 1.90527 1.13682 1.87042 1.55644 1.21692 0.94445 0.90570 1.01537 1.59868 1.17519 0.97912 1.50458 1.21842 1.00638 0.91342 0.92071 1.20825 0.90717 1.00095 0.84238 1.45855 1.13834 1.65867 1.09656 1.20144 0.88459 0.78823 0.83199 1.90754 1.16013 1.51905 1.81031 1.22831 0.92547 0.85377 0.94849 1.92933 1.79588 1.52174 1.91282 1.23643 0.99489 1.05896 0.90623 1.23237 0.87862 0.95572 0.96043 1.88477 1.44302 1.70174 1.25982 1.23960 0.98960 0.96109 0.84405 1.23636 0.98418 1.04838 0.97517 1.23167 0.97613 0.96472 1.03095 0.91747 0.77430 0.93402 0.89515 0.82378 0.90662 0.89830 0.75482 0.88187 0.87004 0.90451 0.90203 0.89246 0.87316 0.88359 0.88268 0.88006 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.44 10.06 7.82 -10.98 -0.09 9.97 16 11 O -0.58 -15.38 15.79 5.55 0.09 -15.30 16 12 C 0.05 0.83 6.01 -4.98 -0.03 0.80 16 13 N -0.63 -9.12 6.29 -101.22 -0.64 -9.76 16 14 C 0.03 0.38 1.81 -131.60 -0.24 0.14 16 15 C 0.16 1.84 5.68 -4.04 -0.02 1.82 16 16 N -0.70 -7.56 5.52 -60.29 -0.33 -7.90 16 17 C 0.51 6.09 6.93 -10.99 -0.08 6.02 16 18 O -0.52 -7.65 15.70 5.56 0.09 -7.57 16 19 C 0.07 0.68 1.52 -89.38 -0.14 0.54 16 20 F -0.18 -1.90 17.03 2.25 0.04 -1.86 16 21 C -0.16 -1.40 6.03 -24.64 -0.15 -1.55 16 22 C 0.05 0.41 7.80 37.88 0.30 0.71 16 23 O -0.37 -4.17 11.36 -35.23 -0.40 -4.57 16 24 C 0.04 0.44 7.05 38.18 0.27 0.71 16 25 C -0.20 -1.91 10.07 -26.73 -0.27 -2.17 16 26 C -0.17 -1.46 9.89 -26.73 -0.26 -1.72 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.39 6.62 -51.93 -0.34 1.05 16 31 H 0.36 5.37 8.32 -39.29 -0.33 5.04 16 32 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 33 H 0.08 1.08 6.52 -51.93 -0.34 0.75 16 34 H 0.41 3.95 8.41 -40.82 -0.34 3.61 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.11 1.04 7.33 -51.93 -0.38 0.66 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.94 8.02 -51.93 -0.42 0.53 16 40 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -32.39 376.42 -6.98 -39.37 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -6.20 Total: 16.34 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.95 Total: 7.33 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.30 Total: -55.31 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.23 Total: -27.43 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.39 -6.98 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754522107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.019 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds