Wall clock time and date at job start Tue Mar 31 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48496 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46689 * 300.00078 * 3 2 1 6 6 H 1.48497 * 109.46761 * 59.99887 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21254 * 119.99638 * 0.02562 * 11 10 9 13 13 C 1.47118 * 120.00102 * 180.02562 * 11 10 9 14 14 C 1.39886 * 120.16558 * 359.72596 * 13 11 10 15 15 C 1.37851 * 119.82705 * 179.74338 * 14 13 11 16 16 C 1.38481 * 120.16688 * 0.51018 * 15 14 13 17 17 I 2.09502 * 119.83011 * 179.74231 * 16 15 14 18 18 C 1.38481 * 120.33952 * 359.76502 * 16 15 14 19 19 C 1.37856 * 120.16466 * 359.97438 * 18 16 15 20 20 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 22 22 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 23 23 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 24 24 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 25 25 H 1.07993 * 120.08175 * 359.97438 * 14 13 11 26 26 H 1.07999 * 119.91252 * 180.25794 * 15 14 13 27 27 H 1.07998 * 119.92208 * 179.97438 * 18 16 15 28 28 H 1.07994 * 120.08337 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2789 -4.9672 0.0011 13 6 2.2269 -6.2414 0.0019 14 6 3.6258 -6.2455 -0.0039 15 6 4.3079 -7.4434 0.0022 16 6 3.6119 -8.6406 0.0032 17 53 4.6592 -10.4550 0.0043 18 6 2.2271 -8.6446 0.0031 19 6 1.5309 -7.4548 0.0025 20 1 -0.4850 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8904 23 1 2.8716 -3.6044 0.8905 24 1 2.8717 -3.6045 -0.8894 25 1 4.1698 -5.3127 -0.0092 26 1 5.3879 -7.4482 0.0020 27 1 1.6910 -9.5822 0.0035 28 1 0.4510 -7.4594 0.0020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002392823.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:28 Heat of formation + Delta-G solvation = -12.800382 kcal Electronic energy + Delta-G solvation = -13487.907363 eV Core-core repulsion = 10941.677488 eV Total energy + Delta-G solvation = -2546.229875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 329.986 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95627 -38.15906 -33.59455 -32.74060 -31.51182 -30.79273 -28.53826 -25.89100 -23.27838 -22.82989 -21.20361 -19.16268 -17.20492 -16.14140 -15.48121 -15.22107 -14.80034 -14.51642 -14.21563 -13.73702 -13.64133 -13.17820 -12.24786 -12.22708 -11.48351 -11.42667 -11.10683 -10.97999 -10.61645 -10.53985 -10.19464 -10.03137 -9.79424 -9.25270 -9.21863 -8.98024 -8.95877 -8.37122 -6.00652 -4.05034 0.46889 0.82504 1.12766 2.56503 3.30083 3.37442 3.40513 3.65584 4.28400 4.47805 4.56489 4.67846 5.11648 5.13932 5.34723 5.41148 5.60185 5.75886 5.96858 6.01939 6.13316 6.15081 6.33770 6.55687 6.90434 7.67424 7.77093 7.95548 7.99737 8.37050 9.02802 9.59075 11.10392 Molecular weight = 329.99amu Principal moments of inertia in cm(-1) A = 0.051083 B = 0.002544 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.997682 B =11003.841517 C =11531.391271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.156 4.156 11 C 0.385 3.615 12 O -0.442 6.442 13 C -0.138 4.138 14 C -0.068 4.068 15 C -0.100 4.100 16 C -0.082 4.082 17 I -0.047 7.047 18 C -0.100 4.100 19 C -0.065 4.065 20 H 0.261 0.739 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.146 0.854 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 -25.402 0.001 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.194 4.194 11 C 0.261 3.739 12 O -0.316 6.316 13 C -0.139 4.139 14 C -0.088 4.088 15 C -0.120 4.120 16 C -0.222 4.222 17 I 0.103 6.897 18 C -0.120 4.120 19 C -0.085 4.085 20 H 0.070 0.930 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.163 0.837 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.833 -26.557 0.001 29.074 hybrid contribution -0.066 1.910 0.000 1.911 sum 11.767 -24.647 0.001 27.312 Atomic orbital electron populations 1.69997 1.06083 1.26547 1.50249 1.25038 0.94839 0.99313 0.95246 0.86528 0.80022 0.83773 0.77615 1.19714 1.20994 1.20998 1.21245 0.93000 0.90929 1.51315 0.92462 1.18963 0.93352 0.89963 0.98443 1.22176 1.01208 0.93174 1.02800 1.23104 0.89314 0.90208 0.71234 1.90503 1.16363 1.89810 1.34875 1.21154 0.94736 0.95983 1.02061 1.21630 0.93253 0.98539 0.95391 1.21072 1.00287 0.90929 0.99729 1.24458 0.95927 0.95505 1.06339 1.96837 1.73348 1.20828 1.98671 1.21041 0.92226 0.98865 0.99898 1.21534 1.01068 0.90859 0.95038 0.92968 0.95922 0.95910 0.89478 0.89472 0.83669 0.84852 0.85016 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.78 4.26 -27.89 -0.12 0.66 15 10 C -0.16 -3.02 4.25 -27.88 -0.12 -3.14 15 11 C 0.38 6.99 7.12 -30.70 -0.22 6.77 15 12 O -0.44 -9.55 15.97 5.58 0.09 -9.46 15 13 C -0.14 -1.96 5.87 -105.06 -0.62 -2.58 15 14 C -0.07 -0.80 9.47 -39.11 -0.37 -1.17 15 15 C -0.10 -1.03 9.73 -39.63 -0.39 -1.42 15 16 C -0.08 -0.85 6.21 -39.40 -0.24 -1.10 15 17 I -0.05 -0.41 40.25 -73.02 -2.94 -3.35 15 18 C -0.10 -1.08 9.73 -39.63 -0.39 -1.46 15 19 C -0.07 -0.83 9.60 -39.11 -0.38 -1.21 15 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 21 H 0.02 0.64 8.10 -51.93 -0.42 0.22 15 22 H 0.02 0.64 8.10 -51.93 -0.42 0.22 15 23 H 0.09 1.52 8.09 -51.93 -0.42 1.10 15 24 H 0.09 1.53 8.08 -51.93 -0.42 1.11 15 25 H 0.15 1.49 7.05 -52.49 -0.37 1.12 15 26 H 0.13 1.12 8.06 -52.49 -0.42 0.70 15 27 H 0.13 1.17 8.06 -52.49 -0.42 0.75 15 28 H 0.14 1.78 7.65 -52.49 -0.40 1.38 15 LS Contribution 280.42 15.07 4.23 4.23 Total: -1.00 -31.42 280.42 -8.99 -40.42 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -2.84 Total: -3.81 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.25 Total: -18.07 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 53 Polarization: -0.41 SS G_CDS: -2.94 Total: -3.35 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.42 -8.99 -40.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392823.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.617 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds