Wall clock time and date at job start Tue Mar 31 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00215 * 2 1 4 4 H 1.48491 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47127 * 300.00276 * 3 2 1 6 6 H 1.48503 * 109.47005 * 60.00359 * 3 2 1 7 7 C 1.37875 * 119.99411 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99538 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00551 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47010 * 179.97438 * 10 9 7 12 12 O 1.21254 * 120.00146 * 0.02562 * 11 10 9 13 13 C 1.47172 * 119.99651 * 180.02562 * 11 10 9 14 14 C 1.39868 * 120.17014 * 359.97438 * 13 11 10 15 15 C 1.37870 * 119.83827 * 180.02562 * 14 13 11 16 16 C 1.38417 * 120.17808 * 0.02562 * 15 14 13 17 17 C 1.38434 * 120.34489 * 359.97438 * 16 15 14 18 18 I 2.09498 * 119.92068 * 180.02562 * 17 16 15 19 19 C 1.37974 * 120.15672 * 0.02562 * 17 16 15 20 20 H 0.97005 * 119.99418 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46890 * 60.00187 * 9 7 2 22 22 H 1.08998 * 109.47427 * 300.00659 * 9 7 2 23 23 H 1.09001 * 109.46880 * 60.00272 * 10 9 7 24 24 H 1.08995 * 109.47706 * 300.00284 * 10 9 7 25 25 H 1.08005 * 120.08018 * 0.02562 * 14 13 11 26 26 H 1.07998 * 119.90838 * 180.02562 * 15 14 13 27 27 H 1.08003 * 119.82280 * 180.02562 * 16 15 14 28 28 H 1.08004 * 120.08696 * 180.26859 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4915 -4.9672 -0.0012 12 8 0.2790 -4.9671 -0.0003 13 6 2.2274 -6.2417 -0.0016 14 6 3.6261 -6.2459 -0.0032 15 6 4.3085 -7.4439 -0.0041 16 6 3.6132 -8.6407 -0.0041 17 6 2.2288 -8.6453 -0.0026 18 53 1.1899 -10.4645 -0.0017 19 6 1.5317 -7.4546 -0.0016 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.8724 -3.6048 0.8877 24 1 2.8712 -3.6041 -0.8922 25 1 4.1702 -5.3129 -0.0037 26 1 5.3884 -7.4484 -0.0049 27 1 4.1535 -9.5758 -0.0044 28 1 0.4517 -7.4595 0.0040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002392828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:34 Heat of formation + Delta-G solvation = -12.864364 kcal Electronic energy + Delta-G solvation = -13526.109651 eV Core-core repulsion = 10979.877001 eV Total energy + Delta-G solvation = -2546.232650 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 329.986 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.95503 -38.12191 -33.60905 -32.78432 -31.44980 -30.85589 -28.14226 -26.13992 -23.82734 -22.25778 -21.27368 -18.90560 -17.25822 -16.36331 -15.51828 -15.35317 -14.79324 -14.46994 -14.23801 -13.65949 -13.30064 -13.16619 -12.23428 -12.21822 -11.88165 -11.23273 -11.04178 -10.97707 -10.61326 -10.54436 -10.12690 -10.02509 -9.78589 -9.21020 -9.17616 -8.98876 -8.96567 -8.36644 -6.00128 -4.04598 0.58746 0.90002 1.00276 2.60368 3.30267 3.37562 3.40575 3.65209 4.26119 4.46720 4.63141 4.78850 4.99091 5.14050 5.28534 5.35133 5.63571 5.73799 6.00847 6.07196 6.13367 6.15498 6.29063 6.54835 6.91073 7.68023 7.77875 7.97645 8.00385 8.37509 9.03243 9.59457 11.10872 Molecular weight = 329.99amu Principal moments of inertia in cm(-1) A = 0.048321 B = 0.002753 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.320609 B =10168.877217 C =10727.751969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.155 4.155 11 C 0.387 3.613 12 O -0.443 6.443 13 C -0.153 4.153 14 C -0.054 4.054 15 C -0.129 4.129 16 C -0.066 4.066 17 C -0.115 4.115 18 I -0.045 7.045 19 C -0.036 4.036 20 H 0.261 0.739 21 H 0.022 0.978 22 H 0.023 0.977 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.144 0.856 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -25.432 -0.005 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.192 4.192 11 C 0.263 3.737 12 O -0.317 6.317 13 C -0.156 4.156 14 C -0.072 4.072 15 C -0.148 4.148 16 C -0.087 4.087 17 C -0.255 4.255 18 I 0.105 6.895 19 C -0.057 4.057 20 H 0.070 0.930 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.161 0.839 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.156 -26.590 -0.004 27.294 hybrid contribution 1.128 1.916 -0.001 2.223 sum 7.283 -24.675 -0.005 25.727 Atomic orbital electron populations 1.70007 1.06073 1.26533 1.50243 1.25043 0.94847 0.99318 0.95268 0.86526 0.80002 0.83777 0.77610 1.19723 1.21005 1.21000 1.21240 0.92986 0.90927 1.51303 0.92471 1.18961 0.93354 0.89940 0.98465 1.22166 1.01192 0.93117 1.02769 1.23085 0.89317 0.90083 0.71227 1.90507 1.16355 1.89768 1.35031 1.21042 0.94793 0.95413 1.04339 1.21745 0.93175 0.99205 0.93121 1.21197 1.00465 0.91708 1.01474 1.21273 0.92225 0.99068 0.96108 1.24160 0.95911 0.95462 1.09986 1.96819 1.74381 1.19480 1.98806 1.21423 1.00923 0.90192 0.93121 0.92973 0.95912 0.95903 0.89500 0.89491 0.83860 0.84593 0.85201 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 15 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 15 9 C 0.03 0.78 4.26 -27.89 -0.12 0.66 15 10 C -0.16 -3.01 4.25 -27.88 -0.12 -3.13 15 11 C 0.39 7.14 7.12 -30.68 -0.22 6.92 15 12 O -0.44 -9.78 15.98 5.58 0.09 -9.69 15 13 C -0.15 -2.22 5.87 -105.07 -0.62 -2.84 15 14 C -0.05 -0.62 9.47 -39.11 -0.37 -0.99 15 15 C -0.13 -1.20 10.03 -39.65 -0.40 -1.60 15 16 C -0.07 -0.64 9.75 -39.44 -0.38 -1.03 15 17 C -0.11 -1.32 6.19 -39.61 -0.25 -1.57 15 18 I -0.04 -0.45 40.26 -73.02 -2.94 -3.39 15 19 C -0.04 -0.50 9.30 -39.08 -0.36 -0.86 15 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 21 H 0.02 0.65 8.10 -51.93 -0.42 0.23 15 22 H 0.02 0.65 8.10 -51.93 -0.42 0.23 15 23 H 0.09 1.52 8.09 -51.93 -0.42 1.10 15 24 H 0.09 1.52 8.09 -51.93 -0.42 1.10 15 25 H 0.14 1.42 7.05 -52.48 -0.37 1.05 15 26 H 0.14 0.87 8.06 -52.49 -0.42 0.45 15 27 H 0.13 0.98 8.06 -52.48 -0.42 0.56 15 28 H 0.14 2.02 7.65 -52.48 -0.40 1.62 15 LS Contribution 280.43 15.07 4.23 4.23 Total: -1.00 -31.81 280.43 -8.99 -40.80 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: -2.84 Total: -4.08 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.24 Total: -17.87 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.39 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 53 Polarization: -0.45 SS G_CDS: -2.94 Total: -3.39 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.81 -8.99 -40.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.934 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds