Wall clock time and date at job start Tue Mar 31 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00356 * 2 1 4 4 H 1.48498 * 109.47192 * 269.99978 * 3 2 1 5 5 H 1.48508 * 109.46789 * 29.99705 * 3 2 1 6 6 H 1.48498 * 109.47276 * 149.99568 * 3 2 1 7 7 C 1.37886 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99973 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99688 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46890 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46889 * 179.97438 * 10 9 7 12 12 O 1.21258 * 120.00094 * 0.02562 * 11 10 9 13 13 C 1.47116 * 119.99726 * 180.02562 * 11 10 9 14 14 C 1.39886 * 120.17991 * 0.02562 * 13 11 10 15 15 C 1.37845 * 119.83081 * 179.97438 * 14 13 11 16 16 C 1.38453 * 120.19157 * 0.02562 * 15 14 13 17 17 C 1.38339 * 120.36287 * 0.02562 * 16 15 14 18 18 C 1.38002 * 120.16494 * 359.96477 * 17 16 15 19 19 I 2.09501 * 120.09765 * 179.97438 * 18 17 16 20 20 H 0.97004 * 119.99953 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.47036 * 59.99599 * 9 7 2 22 22 H 1.08997 * 109.47100 * 299.99574 * 9 7 2 23 23 H 1.09004 * 109.46619 * 60.00163 * 10 9 7 24 24 H 1.08997 * 109.47387 * 299.99992 * 10 9 7 25 25 H 1.08003 * 120.08608 * 0.25647 * 14 13 11 26 26 H 1.08001 * 119.90212 * 179.97438 * 15 14 13 27 27 H 1.08004 * 119.81213 * 180.02562 * 16 15 14 28 28 H 1.07995 * 119.91298 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6367 -0.0001 12 8 6.1348 -1.5866 0.0004 13 6 6.2640 -3.9108 -0.0008 14 6 5.5683 -5.1244 -0.0020 15 6 6.2647 -6.3140 -0.0031 16 6 7.6492 -6.3103 -0.0027 17 6 8.3453 -5.1148 -0.0004 18 6 7.6631 -3.9152 0.0005 19 53 8.7193 -2.1059 0.0047 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6809 0.8905 22 1 3.8752 -0.6798 -0.8895 23 1 3.6584 -3.1503 -0.8904 24 1 3.6578 -3.1508 0.8896 25 1 4.4883 -5.1294 -0.0065 26 1 5.7288 -7.2517 -0.0036 27 1 8.1887 -7.2460 -0.0040 28 1 9.4252 -5.1203 0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002392834.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:31 Heat of formation + Delta-G solvation = 4.620624 kcal Electronic energy + Delta-G solvation = -13828.355986 eV Core-core repulsion = 11282.881542 eV Total energy + Delta-G solvation = -2545.474444 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 329.986 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.14147 -38.06499 -33.69112 -32.39844 -31.87295 -30.87545 -28.15961 -26.30215 -23.75229 -22.22930 -20.86940 -19.23675 -17.31358 -16.49678 -15.48609 -15.46260 -14.93842 -14.48757 -13.96372 -13.76458 -13.27287 -13.18445 -12.55306 -12.31533 -11.84672 -11.42921 -10.99926 -10.98929 -10.62174 -10.32217 -10.10164 -9.85592 -9.71589 -9.20735 -9.15509 -8.89205 -8.52268 -8.35519 -6.04343 -4.03130 0.55475 1.03122 1.21538 2.59313 3.36479 3.43322 3.53184 3.61656 4.23811 4.49378 4.59505 4.74771 4.97490 5.15816 5.31074 5.40434 5.52240 5.75150 5.97205 6.00647 6.06003 6.15519 6.19715 6.57227 6.73283 7.30500 7.39395 7.73834 7.91370 8.50688 8.98482 9.58710 11.08527 Molecular weight = 329.99amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.005174 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.241492 B = 5410.469237 C = 6772.263220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.003 4.003 10 C -0.144 4.144 11 C 0.371 3.629 12 O -0.419 6.419 13 C -0.135 4.135 14 C -0.067 4.067 15 C -0.118 4.118 16 C -0.096 4.096 17 C -0.099 4.099 18 C -0.069 4.069 19 I -0.008 7.008 20 H 0.263 0.737 21 H 0.023 0.977 22 H 0.018 0.982 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.144 0.856 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.977 -12.741 0.036 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.041 4.041 10 C -0.181 4.181 11 C 0.246 3.754 12 O -0.292 6.292 13 C -0.138 4.138 14 C -0.087 4.087 15 C -0.137 4.137 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.209 4.209 19 I 0.141 6.859 20 H 0.073 0.927 21 H 0.041 0.959 22 H 0.037 0.963 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.161 0.839 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 21.893 -10.783 0.043 24.405 hybrid contribution -0.430 -0.377 -0.032 0.573 sum 21.463 -11.160 0.012 24.191 Atomic orbital electron populations 1.69910 1.06301 1.26972 1.51029 1.24980 0.94704 0.99219 0.94330 0.86813 0.80651 0.83459 0.78753 1.20234 1.21429 1.18505 1.21101 0.89256 0.94538 1.51342 0.90938 1.19415 0.96724 0.90435 0.97508 1.21958 0.89643 1.03159 1.03381 1.23156 0.93174 0.87188 0.71901 1.90708 1.70050 1.33984 1.34473 1.20684 0.93045 0.96878 1.03234 1.21620 1.00991 0.90860 0.95221 1.21287 0.94325 0.98424 0.99620 1.21396 0.94546 0.97777 0.97858 1.21008 1.00145 0.90920 0.99936 1.24795 0.95524 0.97678 1.02872 1.96686 1.65005 1.26063 1.98105 0.92713 0.95885 0.96331 0.89120 0.89084 0.83876 0.84913 0.85105 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 15 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 6 H -0.26 -6.62 6.54 56.52 0.37 -6.25 15 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 15 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 15 9 C 0.00 -0.08 3.33 -27.88 -0.09 -0.18 15 10 C -0.14 -2.73 4.25 -27.88 -0.12 -2.85 15 11 C 0.37 6.58 7.10 -30.71 -0.22 6.36 15 12 O -0.42 -8.39 12.50 5.58 0.07 -8.32 15 13 C -0.13 -1.96 5.87 -105.05 -0.62 -2.57 15 14 C -0.07 -0.78 9.47 -39.11 -0.37 -1.15 15 15 C -0.12 -1.09 10.03 -39.65 -0.40 -1.48 15 16 C -0.10 -0.84 10.04 -39.46 -0.40 -1.24 15 17 C -0.10 -1.05 9.74 -39.63 -0.39 -1.44 15 18 C -0.07 -0.94 6.24 -39.04 -0.24 -1.18 15 19 I -0.01 -0.12 36.55 -73.02 -2.67 -2.79 15 20 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 21 H 0.02 0.58 7.16 -51.93 -0.37 0.21 15 22 H 0.02 0.46 7.53 -51.93 -0.39 0.07 15 23 H 0.09 1.59 8.08 -51.93 -0.42 1.17 15 24 H 0.09 1.60 8.09 -51.93 -0.42 1.18 15 25 H 0.14 1.49 7.05 -52.48 -0.37 1.12 15 26 H 0.13 0.85 8.06 -52.49 -0.42 0.43 15 27 H 0.13 0.75 8.06 -52.48 -0.42 0.33 15 28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 15 LS Contribution 270.83 15.07 4.08 4.08 Total: -1.00 -32.34 270.83 -8.51 -40.85 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -2.83 Total: -5.46 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -3.27 Total: -19.01 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.18 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.07 Total: -8.32 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Atomic # 53 Polarization: -0.12 SS G_CDS: -2.67 Total: -2.79 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.34 -8.51 -40.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392834.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.470 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds