Wall clock time and date at job start Tue Mar 31 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86801 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47152 * 300.00315 * 3 2 1 6 6 H 1.48508 * 109.46877 * 60.00029 * 3 2 1 7 7 C 1.38912 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00711 * 180.02562 * 7 2 1 9 9 O 1.34786 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.34705 * 117.00308 * 180.02562 * 9 7 2 11 11 O 1.21513 * 120.00012 * 359.97438 * 10 9 7 12 12 C 1.47695 * 120.00183 * 180.02562 * 10 9 7 13 13 C 1.39318 * 120.21193 * 355.46513 * 12 10 9 14 14 C 1.38190 * 119.99161 * 179.97438 * 13 12 10 15 15 C 1.38438 * 120.43077 * 359.97438 * 14 13 12 16 16 C 1.38159 * 120.43828 * 0.02562 * 15 14 13 17 17 C 1.39343 * 119.98989 * 0.27705 * 16 15 14 18 18 C 1.47787 * 120.20750 * 179.72832 * 17 16 15 19 19 O 1.21554 * 120.00681 * 76.53344 * 18 17 16 20 20 C 1.47657 * 119.99574 * 256.52270 * 18 17 16 21 21 C 1.39751 * 120.14439 * 5.40913 * 20 18 17 22 22 C 1.37844 * 119.85956 * 179.80981 * 21 20 18 23 23 C 1.38558 * 120.13788 * 0.44856 * 22 21 20 24 24 Cl 1.73609 * 119.85332 * 179.76710 * 23 22 21 25 25 C 1.38550 * 120.28856 * 359.77732 * 23 22 21 26 26 C 1.37844 * 120.14423 * 0.02562 * 25 23 22 27 27 H 0.96996 * 119.99984 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00528 * 0.02562 * 13 12 10 29 29 H 1.07997 * 119.78096 * 179.97438 * 14 13 12 30 30 H 1.08000 * 119.77637 * 180.02562 * 15 14 13 31 31 H 1.07996 * 120.00542 * 179.97438 * 16 15 14 32 32 H 1.08003 * 120.06584 * 359.97438 * 21 20 18 33 33 H 1.07997 * 119.92809 * 180.23007 * 22 21 20 34 34 H 1.08005 * 119.92995 * 179.97438 * 25 23 22 35 35 H 1.08002 * 120.07570 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3464 0.0006 5 1 1.8888 2.3964 -1.2124 6 1 1.8887 2.3964 1.2126 7 6 2.0081 -1.2030 -0.0005 8 1 3.0881 -1.2031 -0.0001 9 8 1.3342 -2.3703 -0.0005 10 6 2.0679 -3.5000 -0.0005 11 8 3.2813 -3.4364 -0.0010 12 6 1.3974 -4.8160 -0.0011 13 6 0.0097 -4.8958 0.0935 14 6 -0.6129 -6.1295 0.0921 15 6 0.1334 -7.2915 -0.0036 16 6 1.5105 -7.2331 -0.0983 17 6 2.1573 -5.9989 -0.0921 18 6 3.6306 -5.9310 -0.1871 19 8 4.1795 -6.1072 -1.2573 20 6 4.4358 -5.6489 1.0180 21 6 3.8190 -5.5576 2.2687 22 6 4.5769 -5.2980 3.3904 23 6 5.9462 -5.1184 3.2785 24 17 6.8928 -4.7857 4.6953 25 6 6.5632 -5.2030 2.0409 26 6 5.8172 -5.4661 0.9120 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5794 -3.9937 0.1672 29 1 -1.6888 -6.1874 0.1660 30 1 -0.3642 -8.2501 -0.0042 31 1 2.0859 -8.1440 -0.1722 32 1 2.7510 -5.6929 2.3564 33 1 4.1018 -5.2309 4.3579 34 1 7.6310 -5.0616 1.9603 35 1 6.2993 -5.5314 -0.0523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003329390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:24 Heat of formation + Delta-G solvation = -63.019590 kcal Electronic energy + Delta-G solvation = -24899.487034 eV Core-core repulsion = 21047.099658 eV Total energy + Delta-G solvation = -3852.387376 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39834 -39.12574 -38.34734 -37.67051 -36.40459 -35.28545 -32.36779 -31.84779 -31.09227 -30.96897 -30.34118 -25.93950 -24.83167 -23.45375 -22.86235 -22.28002 -20.71676 -19.61649 -17.87422 -17.58531 -17.21908 -16.45315 -15.81784 -15.49144 -15.12436 -14.83627 -14.68811 -14.36199 -14.33577 -14.17982 -13.69963 -13.66248 -13.52588 -13.07237 -12.67760 -12.45237 -12.20070 -11.87835 -11.66946 -11.51690 -11.42073 -11.30406 -11.22135 -10.83765 -10.58391 -10.48404 -9.98020 -9.63448 -9.22230 -9.02082 -8.86535 -8.82753 -8.71414 -8.58669 -6.58862 -4.19318 0.68141 0.96608 1.34440 1.37068 2.05622 2.50279 3.03283 3.12173 3.19625 3.33618 3.77035 3.79388 4.06254 4.15755 4.36034 4.76597 4.87901 4.96652 5.03077 5.04773 5.18360 5.32574 5.33608 5.43443 5.56707 5.64789 5.75760 5.94093 5.98216 6.17774 6.19620 6.25159 6.39138 6.45876 6.52355 6.75227 6.77063 6.94911 7.26164 7.66676 7.78968 8.55467 8.90051 9.67014 10.58358 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.008171 B = 0.005214 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.124292 B = 5368.883743 C = 7719.444527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.371 4.371 8 H 0.100 0.900 9 O -0.197 6.197 10 C 0.419 3.581 11 O -0.539 6.539 12 C -0.056 4.056 13 C -0.075 4.075 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.099 4.099 17 C -0.108 4.108 18 C 0.468 3.532 19 O -0.446 6.446 20 C -0.116 4.116 21 C -0.054 4.054 22 C -0.121 4.121 23 C -0.013 4.013 24 Cl -0.074 7.074 25 C -0.123 4.123 26 C -0.047 4.047 27 H 0.272 0.728 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -13.339 6.047 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.446 4.446 8 H 0.118 0.882 9 O -0.104 6.104 10 C 0.267 3.733 11 O -0.438 6.438 12 C -0.058 4.058 13 C -0.093 4.093 14 C -0.133 4.133 15 C -0.128 4.128 16 C -0.117 4.117 17 C -0.109 4.109 18 C 0.345 3.655 19 O -0.321 6.321 20 C -0.117 4.117 21 C -0.073 4.073 22 C -0.140 4.140 23 C -0.039 4.039 24 Cl -0.046 7.046 25 C -0.142 4.142 26 C -0.066 4.066 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.098 -13.185 5.605 14.902 hybrid contribution 0.270 1.073 0.162 1.118 sum 4.368 -12.113 5.767 14.109 Atomic orbital electron populations 1.69941 1.06147 1.28089 1.44764 1.25410 0.95852 0.99020 0.95962 0.85589 0.79639 0.79682 0.78306 1.18735 1.19956 1.19954 1.21417 0.92672 0.79516 1.51017 0.88218 1.83843 1.39159 1.13220 1.74131 1.20657 0.86032 0.85428 0.81150 1.90664 1.14645 1.86856 1.51648 1.19427 0.93669 0.90463 1.02233 1.21639 0.93319 0.99053 0.95292 1.21307 1.00321 0.92044 0.99615 1.21178 0.93419 0.98684 0.99508 1.20950 0.94781 0.95628 1.00318 1.20239 0.94667 0.93481 1.02545 1.20198 0.87464 0.70267 0.87530 1.90584 1.74167 1.37256 1.30061 1.20277 0.94265 1.02900 0.94229 1.21287 1.00033 0.94962 0.91015 1.20937 0.91640 1.01632 0.99756 1.21132 0.92202 1.02513 0.88087 1.98362 1.72579 1.93677 1.39940 1.20938 1.00687 1.02048 0.90499 1.21215 0.92553 0.94183 0.98610 0.91759 0.83475 0.85203 0.85337 0.85277 0.84742 0.84580 0.84608 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.89 13.67 55.49 0.76 -23.14 16 2 C 0.04 1.17 5.50 -17.51 -0.10 1.08 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.37 -10.61 9.65 30.98 0.30 -10.32 16 8 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 9 O -0.20 -5.46 9.00 -21.37 -0.19 -5.65 16 10 C 0.42 10.30 7.81 34.59 0.27 10.57 16 11 O -0.54 -14.02 12.43 -19.28 -0.24 -14.26 16 12 C -0.06 -1.11 5.85 -104.63 -0.61 -1.72 16 13 C -0.07 -1.26 9.61 -39.20 -0.38 -1.63 16 14 C -0.11 -1.46 10.03 -39.53 -0.40 -1.86 16 15 C -0.11 -1.26 10.03 -39.54 -0.40 -1.66 16 16 C -0.10 -1.32 9.78 -39.20 -0.38 -1.70 16 17 C -0.11 -1.88 4.27 -104.58 -0.45 -2.32 16 18 C 0.47 8.77 4.63 -31.83 -0.15 8.62 16 19 O -0.45 -9.25 17.12 5.32 0.09 -9.16 16 20 C -0.12 -1.98 4.35 -104.92 -0.46 -2.44 16 21 C -0.05 -0.84 9.42 -39.16 -0.37 -1.21 16 22 C -0.12 -1.68 9.81 -39.61 -0.39 -2.07 16 23 C -0.01 -0.17 6.33 -39.35 -0.25 -0.42 16 24 Cl -0.07 -0.90 28.95 -51.86 -1.50 -2.40 16 25 C -0.12 -1.69 9.81 -39.61 -0.39 -2.08 16 26 C -0.05 -0.74 9.60 -39.16 -0.38 -1.12 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.15 2.62 7.61 -52.49 -0.40 2.22 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.13 1.94 7.11 -52.48 -0.37 1.56 16 33 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.14 2.10 7.66 -52.49 -0.40 1.70 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -32.60 336.34 -8.33 -40.94 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -2.78 Total: 3.14 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -4.51 Total: -10.26 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.76 Total: -23.14 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.34 Total: -29.07 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.60 -8.33 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003329390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.081 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds