Wall clock time and date at job start Tue Mar 31 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31699 * 1 3 3 Si 1.86808 * 119.99726 * 2 1 4 4 H 1.48504 * 109.46895 * 269.99762 * 3 2 1 5 5 H 1.48492 * 109.47108 * 29.99808 * 3 2 1 6 6 H 1.48493 * 109.46736 * 150.00001 * 3 2 1 7 7 C 1.38578 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99928 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.76198 * 99.99912 * 179.97438 * 9 7 2 11 11 N 1.28776 * 125.03944 * 179.97438 * 10 9 7 12 12 N 1.37790 * 116.11064 * 179.97438 * 11 10 9 13 13 C 1.39906 * 122.68320 * 179.97438 * 12 11 10 14 14 C 1.38926 * 120.06158 * 325.02281 * 13 12 11 15 15 C 1.38085 * 119.93816 * 180.02562 * 14 13 12 16 16 C 1.38400 * 120.06032 * 0.28097 * 15 14 13 17 17 Cl 1.73598 * 119.93527 * 179.72056 * 16 15 14 18 18 C 1.38405 * 120.12487 * 359.44531 * 16 15 14 19 19 C 1.38086 * 120.06371 * 0.55267 * 18 16 15 20 20 C 1.33500 * 114.63663 * 0.25295 * 12 11 10 21 21 S 1.71200 * 125.63084 * 179.71738 * 20 12 11 22 22 S 1.75936 * 125.04159 * 359.97438 * 10 9 7 23 23 H 0.96999 * 120.00094 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.03095 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.96664 * 179.97438 * 15 14 13 26 26 H 1.08006 * 119.96590 * 180.27472 * 18 16 15 27 27 H 1.07997 * 120.03198 * 179.74486 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3170 0.0000 0.0000 3 14 2.2510 1.6179 0.0000 4 1 2.4985 2.0465 -1.4001 5 1 1.4484 2.6527 0.7000 6 1 3.5484 1.4403 0.7000 7 6 2.0099 -1.2001 0.0005 8 1 3.0899 -1.2000 0.0001 9 16 1.1290 -2.7260 0.0005 10 6 2.4788 -3.8585 0.0005 11 7 2.3675 -5.1415 0.0010 12 7 3.5477 -5.8526 0.0004 13 6 3.5872 -7.2511 0.0013 14 6 2.6226 -7.9740 0.6920 15 6 2.6643 -9.3542 0.6916 16 6 3.6691 -10.0173 0.0088 17 17 3.7225 -11.7525 0.0166 18 6 4.6280 -9.2998 -0.6848 19 6 4.5913 -7.9194 -0.6879 20 6 4.6507 -5.1004 0.0047 21 16 6.2586 -5.6880 0.0120 22 16 4.1785 -3.4043 -0.0001 23 1 -0.4850 0.8400 -0.0004 24 1 1.8409 -7.4570 1.2287 25 1 1.9149 -9.9167 1.2288 26 1 5.4084 -9.8200 -1.2204 27 1 5.3422 -7.3600 -1.2260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003407048.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:22 Heat of formation + Delta-G solvation = 88.823709 kcal Electronic energy + Delta-G solvation = -17454.702475 eV Core-core repulsion = 14390.475774 eV Total energy + Delta-G solvation = -3064.226701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 329.942 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86877 -38.75267 -36.62057 -33.60368 -33.28247 -31.38330 -29.98045 -26.84013 -26.47064 -23.80651 -22.88892 -21.50268 -19.70021 -18.63152 -17.96756 -16.92866 -16.16473 -16.04576 -15.60296 -15.26479 -14.87299 -14.45050 -13.72818 -13.64271 -13.49764 -12.68103 -12.52351 -12.17113 -11.82732 -11.75975 -11.61434 -11.53869 -11.38299 -11.29238 -11.04383 -10.74050 -10.45456 -10.03041 -9.71229 -9.37105 -9.26783 -8.68118 -7.80512 -7.41718 -7.23604 -7.04598 -4.88798 0.16347 0.80228 0.92355 1.12673 1.26635 1.63689 1.70194 1.92240 2.21894 2.66959 2.87539 2.93659 2.99301 3.42266 3.57001 4.40516 4.41590 4.54155 4.67522 4.85292 4.97909 5.29950 5.31794 5.66940 5.79364 6.02949 6.17100 6.23446 6.64749 6.87324 7.38944 7.54530 8.42003 9.99617 Molecular weight = 329.94amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.003082 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.244015 B = 9081.536473 C =10046.269451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.093 3.907 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.584 4.584 8 H 0.097 0.903 9 S 0.271 5.729 10 C 0.013 3.987 11 N -0.295 5.295 12 N -0.279 5.279 13 C 0.136 3.864 14 C -0.081 4.081 15 C -0.107 4.107 16 C -0.027 4.027 17 Cl -0.070 7.070 18 C -0.100 4.100 19 C -0.074 4.074 20 C 0.197 3.803 21 S -0.532 6.532 22 S 0.177 5.823 23 H 0.287 0.713 24 H 0.144 0.856 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 -11.603 -0.197 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.121 4.121 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.733 4.733 8 H 0.115 0.885 9 S 0.504 5.496 10 C -0.383 4.383 11 N -0.125 5.125 12 N -0.060 5.060 13 C 0.041 3.959 14 C -0.102 4.102 15 C -0.126 4.126 16 C -0.055 4.055 17 Cl -0.041 7.041 18 C -0.120 4.120 19 C -0.098 4.098 20 C -0.174 4.174 21 S -0.399 6.399 22 S 0.413 5.587 23 H 0.097 0.903 24 H 0.162 0.838 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.567 -11.706 -0.181 11.811 hybrid contribution 0.811 0.761 0.067 1.114 sum 2.378 -10.944 -0.114 11.200 Atomic orbital electron populations 1.69906 1.06222 1.30018 1.41863 1.25078 0.95291 1.00025 0.91751 0.85873 0.79788 0.79123 0.79513 1.19098 1.19793 1.18473 1.23377 0.96443 0.90963 1.62561 0.88526 1.83932 0.96292 0.92037 1.77320 1.31608 1.05540 0.98844 1.02352 1.74909 1.01868 1.04113 1.31560 1.46268 1.01261 1.05760 1.52707 1.17586 0.99272 0.77914 1.01104 1.20980 0.98475 0.93159 0.97636 1.20842 0.98358 0.93269 1.00172 1.21066 0.98184 0.84581 1.01647 1.98368 1.98190 1.10027 1.97549 1.20886 0.98578 0.92741 0.99768 1.21685 0.97388 0.93883 0.96822 1.29057 0.97269 0.98858 0.92198 1.92669 0.99232 1.80004 1.67990 1.86699 0.97263 0.99489 1.75243 0.90307 0.83812 0.84042 0.83931 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.97 13.22 55.48 0.73 -19.24 15 2 C 0.09 2.10 5.49 -17.48 -0.10 2.01 15 3 Si 0.93 17.54 29.55 -169.99 -5.02 12.51 15 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 7 C -0.58 -13.13 9.24 30.86 0.29 -12.85 15 8 H 0.10 2.10 5.89 -52.49 -0.31 1.79 15 9 S 0.27 5.66 21.89 -107.50 -2.35 3.31 15 10 C 0.01 0.26 7.78 51.48 0.40 0.66 15 11 N -0.30 -5.59 11.32 30.95 0.35 -5.24 15 12 N -0.28 -5.08 3.58 -10.38 -0.04 -5.12 15 13 C 0.14 2.17 6.15 -83.66 -0.51 1.65 15 14 C -0.08 -1.10 9.65 -39.38 -0.38 -1.48 15 15 C -0.11 -1.21 9.82 -39.58 -0.39 -1.60 15 16 C -0.03 -0.31 6.32 -39.46 -0.25 -0.56 15 17 Cl -0.07 -0.70 28.95 -51.86 -1.50 -2.21 15 18 C -0.10 -1.19 9.82 -39.58 -0.39 -1.58 15 19 C -0.07 -1.08 8.40 -39.38 -0.33 -1.41 15 20 C 0.20 3.74 7.34 53.49 0.39 4.14 15 21 S -0.53 -10.42 27.33 -107.50 -2.94 -13.36 15 22 S 0.18 3.32 21.04 -107.50 -2.26 1.06 15 23 H 0.29 6.24 8.31 -40.82 -0.34 5.90 15 24 H 0.14 1.89 7.95 -52.49 -0.42 1.47 15 25 H 0.14 1.25 8.06 -52.49 -0.42 0.83 15 26 H 0.14 1.40 8.06 -52.48 -0.42 0.97 15 27 H 0.17 2.58 5.67 -43.55 -0.25 2.33 15 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -24.40 302.15 -10.70 -35.10 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -0.95 Total: -0.34 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.27 Total: -11.03 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 1.05 Total: -29.60 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.51 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -7.55 Total: -8.99 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -24.40 -10.70 -35.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003407048.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.919 kcal (2) G-P(sol) polarization free energy of solvation -24.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds