Wall clock time and date at job start Tue Mar 31 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 119.99939 * 2 1 4 4 H 1.48501 * 109.46781 * 270.26969 * 3 2 1 5 5 H 1.48495 * 109.47449 * 30.27078 * 3 2 1 6 6 H 1.48498 * 109.47513 * 150.27407 * 3 2 1 7 7 C 1.38705 * 119.99946 * 180.26782 * 2 1 3 8 8 H 1.08000 * 119.99583 * 359.72852 * 7 2 1 9 9 S 1.76192 * 119.99981 * 179.72770 * 7 2 1 10 10 C 1.76203 * 100.00070 * 180.02562 * 9 7 2 11 11 N 1.31693 * 126.39415 * 359.68771 * 10 9 7 12 12 N 1.28510 * 110.07281 * 179.88331 * 11 10 9 13 13 C 1.31567 * 109.98906 * 0.38930 * 12 11 10 14 14 C 1.47633 * 126.45799 * 179.80069 * 13 12 11 15 15 N 1.30991 * 125.91042 * 179.97438 * 14 13 12 16 16 O 1.41657 * 107.79645 * 180.02562 * 15 14 13 17 17 N 1.41628 * 107.71051 * 359.97438 * 16 15 14 18 18 C 1.30412 * 108.00232 * 359.70625 * 17 16 15 19 19 N 1.38869 * 125.84726 * 180.24680 * 18 17 16 20 20 N 1.36869 * 126.39438 * 180.02562 * 10 9 7 21 21 C 1.40114 * 127.18033 * 359.95740 * 20 10 9 22 22 C 1.38850 * 120.07249 * 244.74996 * 21 20 10 23 23 C 1.38116 * 119.93575 * 179.79712 * 22 21 20 24 24 C 1.38283 * 120.06575 * 0.45692 * 23 22 21 25 25 C 1.38287 * 120.13594 * 359.79958 * 24 23 22 26 26 C 1.38113 * 120.06682 * 359.97344 * 25 24 23 27 27 H 0.97000 * 119.99665 * 359.73318 * 1 2 3 28 28 H 0.97002 * 119.99927 * 180.23272 * 19 18 17 29 29 H 0.97002 * 120.00265 * 0.23557 * 19 18 17 30 30 H 1.07999 * 120.03044 * 0.02562 * 22 21 20 31 31 H 1.07996 * 119.96442 * 180.23663 * 23 22 21 32 32 H 1.07996 * 119.93328 * 179.76369 * 24 23 22 33 33 H 1.07995 * 119.96195 * 179.97438 * 25 24 23 34 34 H 1.08005 * 120.03207 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4918 2.0496 -1.4001 5 1 1.4505 2.6510 0.7057 6 1 3.5505 1.4386 0.6942 7 6 2.0096 -1.2012 -0.0056 8 1 1.4696 -2.1365 -0.0056 9 16 3.7715 -1.2012 -0.0129 10 6 4.0775 -2.9364 -0.0189 11 7 3.1693 -3.8901 -0.0120 12 7 3.7391 -5.0419 -0.0219 13 6 5.0467 -4.8968 -0.0274 14 6 6.0496 -5.9802 -0.0349 15 7 7.3501 -5.8233 -0.0407 16 8 7.9415 -7.1105 -0.0474 17 7 6.8954 -8.0652 -0.0444 18 6 5.7616 -7.4209 -0.0303 19 7 4.4985 -7.9977 -0.0182 20 7 5.3035 -3.5449 -0.0251 21 6 6.5583 -2.9213 -0.0288 22 6 7.4051 -3.0683 -1.1193 23 6 8.6396 -2.4489 -1.1217 24 6 9.0364 -1.6907 -0.0355 25 6 8.1975 -1.5468 1.0543 26 6 6.9599 -2.1598 1.0607 27 1 -0.4850 0.8401 0.0039 28 1 3.7084 -7.4350 -0.0115 29 1 4.4062 -8.9634 -0.0164 30 1 7.0972 -3.6634 -1.9664 31 1 9.2970 -2.5598 -1.9713 32 1 10.0037 -1.2105 -0.0381 33 1 8.5104 -0.9543 1.9013 34 1 6.3050 -2.0467 1.9120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004414167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:39 Heat of formation + Delta-G solvation = 204.111234 kcal Electronic energy + Delta-G solvation = -24798.152528 eV Core-core repulsion = 21056.270773 eV Total energy + Delta-G solvation = -3741.881755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.70616 -40.85845 -39.23208 -35.60355 -34.82882 -33.28412 -32.80861 -31.13356 -30.74271 -30.12718 -29.71352 -26.08860 -24.80381 -23.29745 -23.13494 -22.36170 -21.64917 -20.57439 -18.87908 -17.79551 -17.49215 -16.84151 -16.44509 -16.39072 -15.85528 -15.72460 -15.62632 -15.18145 -14.64082 -14.46863 -14.30168 -13.60138 -13.17368 -12.96775 -12.46707 -12.38596 -12.13612 -11.91193 -11.73775 -11.60772 -11.52473 -11.37040 -11.32865 -11.29205 -10.67713 -10.36951 -10.24648 -9.81513 -9.28037 -9.18978 -9.08458 -8.94510 -8.83715 -7.36692 -6.59711 -4.41863 0.29317 0.97305 1.23883 1.60725 1.75726 2.35090 2.45299 2.54103 2.87127 3.01031 3.06967 3.11462 3.14272 3.30738 3.55302 3.91715 4.14922 4.20495 4.73683 4.77110 4.79273 4.88186 4.93209 4.95714 5.22424 5.31455 5.42509 5.57336 5.71003 5.84235 5.98510 6.17488 6.29095 6.32390 6.58458 6.74122 6.80672 7.05253 7.51759 7.65286 8.43051 8.76216 8.78863 10.48668 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.004666 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.577588 B = 5999.157729 C = 7854.494287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.106 3.894 3 Si 0.840 3.160 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.238 1.238 7 C -0.538 4.538 8 H 0.125 0.875 9 S 0.100 5.900 10 C 0.211 3.789 11 N -0.274 5.274 12 N -0.234 5.234 13 C 0.176 3.824 14 C 0.162 3.838 15 N -0.255 5.255 16 O 0.023 5.977 17 N -0.364 5.364 18 C 0.364 3.636 19 N -0.804 5.804 20 N -0.418 5.418 21 C 0.116 3.884 22 C -0.084 4.084 23 C -0.106 4.106 24 C -0.105 4.105 25 C -0.108 4.108 26 C -0.094 4.094 27 H 0.278 0.722 28 H 0.432 0.568 29 H 0.415 0.585 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.759 -5.607 0.074 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.107 4.107 3 Si 0.663 3.337 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.163 1.163 7 C -0.686 4.686 8 H 0.142 0.858 9 S 0.334 5.666 10 C -0.157 4.157 11 N -0.122 5.122 12 N -0.082 5.082 13 C -0.089 4.089 14 C -0.025 4.025 15 N 0.000 5.000 16 O -0.107 6.107 17 N -0.132 5.132 18 C 0.085 3.915 19 N -0.362 5.362 20 N -0.112 5.112 21 C 0.025 3.975 22 C -0.104 4.104 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.114 4.114 27 H 0.088 0.912 28 H 0.268 0.732 29 H 0.246 0.754 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.483 -5.347 0.066 16.381 hybrid contribution -0.716 0.329 -0.019 0.789 sum 14.767 -5.018 0.046 15.596 Atomic orbital electron populations 1.69887 1.05673 1.28240 1.44739 1.24651 0.94597 0.98392 0.93014 0.87048 0.81742 0.84394 0.80469 1.18427 1.18556 1.16281 1.22624 0.86342 0.99752 1.59887 0.85754 1.83141 1.12605 0.85549 1.85290 1.27965 0.81216 1.04385 1.02158 1.75013 1.22760 0.92424 1.21959 1.74107 1.00605 1.19739 1.13711 1.20914 0.91982 0.80873 1.15156 1.21961 0.90283 0.90102 1.00130 1.80207 1.05359 1.02290 1.12159 1.93241 1.24436 1.06150 1.86845 1.80142 0.93581 1.09176 1.30289 1.22208 0.89202 0.87397 0.92685 1.41714 1.02310 1.10945 1.81218 1.43514 1.05446 1.04634 1.57607 1.17524 0.83971 0.99664 0.96359 1.21028 0.94167 0.98861 0.96351 1.20980 0.95365 0.97148 0.98953 1.21279 0.99682 0.97927 0.93412 1.21025 0.93185 0.99449 0.98993 1.21194 0.96894 0.96412 0.96885 0.91183 0.73235 0.75383 0.85907 0.85090 0.85328 0.84930 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.58 13.97 55.48 0.77 -22.81 16 2 C 0.11 2.77 5.50 -17.47 -0.10 2.68 16 3 Si 0.84 18.31 27.73 -169.99 -4.71 13.60 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.24 -4.89 6.74 56.52 0.38 -4.51 16 7 C -0.54 -14.25 9.91 30.90 0.31 -13.95 16 8 H 0.12 3.66 7.15 -52.49 -0.38 3.28 16 9 S 0.10 2.21 19.54 -107.50 -2.10 0.11 16 10 C 0.21 4.49 8.00 -87.68 -0.70 3.79 16 11 N -0.27 -6.15 11.03 30.81 0.34 -5.81 16 12 N -0.23 -4.52 10.76 32.60 0.35 -4.17 16 13 C 0.18 3.15 7.89 -153.57 -1.21 1.93 16 14 C 0.16 2.57 7.23 -80.88 -0.58 1.98 16 15 N -0.26 -4.04 11.05 34.44 0.38 -3.66 16 16 O 0.02 0.37 13.62 12.25 0.17 0.54 16 17 N -0.36 -5.38 12.96 32.49 0.42 -4.96 16 18 C 0.36 5.05 8.60 -153.63 -1.32 3.73 16 19 N -0.80 -8.49 9.09 32.44 0.29 -8.20 16 20 N -0.42 -7.69 2.86 -58.12 -0.17 -7.86 16 21 C 0.12 1.84 4.88 -83.62 -0.41 1.43 16 22 C -0.08 -1.18 8.69 -39.40 -0.34 -1.52 16 23 C -0.11 -1.17 10.04 -39.61 -0.40 -1.57 16 24 C -0.10 -1.06 10.04 -39.55 -0.40 -1.45 16 25 C -0.11 -1.20 10.04 -39.61 -0.40 -1.60 16 26 C -0.09 -1.34 9.92 -39.40 -0.39 -1.73 16 27 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.43 4.79 7.42 -40.82 -0.30 4.49 16 29 H 0.42 3.12 8.95 -40.82 -0.37 2.76 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -29.96 326.42 -7.59 -37.55 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -2.31 Total: 7.02 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -5.94 Total: -6.29 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 2.40 Total: -57.46 kcal Atomic # 8 Polarization: 0.37 SS G_CDS: 0.17 Total: 0.54 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.71 Total: 13.60 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.10 Total: 0.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.96 -7.59 -37.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004414167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.663 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds