Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35842 * 116.99961 * 2 1 4 4 C 1.38928 * 119.72268 * 359.97438 * 3 2 1 5 5 C 1.38013 * 119.86858 * 180.56834 * 4 3 2 6 6 C 1.39011 * 119.55044 * 359.89520 * 5 4 3 7 7 C 1.39985 * 120.77567 * 359.06408 * 6 5 4 8 8 C 1.37960 * 119.10887 * 1.52782 * 7 6 5 9 9 C 1.50305 * 120.66864 * 182.31891 * 7 6 5 10 10 C 1.52485 * 112.61130 * 324.98787 * 9 7 6 11 11 C 1.52078 * 109.70163 * 48.14942 * 10 9 7 12 12 C 1.36792 * 126.26266 * 147.35755 * 11 10 9 13 13 C 1.36750 * 115.37172 * 178.32143 * 12 11 10 14 14 C 1.46142 * 125.15659 * 180.02562 * 13 12 11 15 15 O 1.21701 * 120.00115 * 0.02562 * 14 13 12 16 16 O 1.34921 * 119.99930 * 179.97438 * 14 13 12 17 17 C 1.34844 * 116.99806 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00450 * 359.73028 * 17 16 14 19 19 C 1.38781 * 119.99982 * 179.97438 * 17 16 14 20 20 N 1.31433 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46812 * 90.00203 * 21 19 17 23 23 H 1.48494 * 109.47357 * 210.00278 * 21 19 17 24 24 H 1.48502 * 109.47120 * 330.00997 * 21 19 17 25 25 S 1.75891 * 109.69071 * 0.30889 * 13 12 11 26 26 C 1.38485 * 120.26652 * 326.24811 * 11 10 9 27 27 H 1.09002 * 109.47194 * 60.00113 * 1 2 3 28 28 H 1.09007 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47333 * 299.99681 * 1 2 3 30 30 H 1.08001 * 120.06447 * 0.58731 * 4 3 2 31 31 H 1.08000 * 120.22444 * 179.91549 * 5 4 3 32 32 H 1.07997 * 119.93349 * 178.94467 * 8 7 6 33 33 H 1.09004 * 108.85434 * 85.79131 * 9 7 6 34 34 H 1.08997 * 108.85743 * 204.28264 * 9 7 6 35 35 H 1.09005 * 109.43163 * 288.07964 * 10 9 7 36 36 H 1.08999 * 109.43211 * 168.22316 * 10 9 7 37 37 H 1.07999 * 122.31736 * 358.34160 * 12 11 10 38 38 H 0.97005 * 120.00065 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2104 0.0000 4 6 1.2833 2.3718 -0.0005 5 6 1.9067 3.6031 -0.0124 6 6 3.2953 3.6685 -0.0215 7 6 4.0675 2.5011 0.0008 8 6 3.4325 1.2763 0.0001 9 6 5.5681 2.5752 0.0432 10 6 6.1194 3.7552 -0.7497 11 6 5.3607 5.0204 -0.3803 12 6 5.8718 6.2887 -0.3435 13 6 4.9789 7.2710 -0.0148 14 6 5.2934 8.6946 0.0863 15 8 6.4256 9.0845 -0.1305 16 8 4.3282 9.5767 0.4191 17 6 4.6852 10.8747 0.4955 18 1 5.7062 11.1666 0.2985 19 6 3.7417 11.8352 0.8323 20 7 2.5003 11.4795 1.0772 21 14 4.2363 13.6334 0.9389 22 1 4.0536 14.2764 -0.3871 23 1 3.3872 14.3216 1.9440 24 1 5.6616 13.7315 1.3442 25 16 3.3964 6.5603 0.2757 26 6 4.0148 4.9588 -0.0599 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2051 2.3113 0.0086 31 1 1.3197 4.5097 -0.0143 32 1 4.0154 0.3671 0.0000 33 1 5.8870 2.6687 1.0814 34 1 5.9781 1.6533 -0.3691 35 1 6.0038 3.5613 -1.8161 36 1 7.1765 3.8856 -0.5180 37 1 6.9087 6.4999 -0.5594 38 1 1.8409 12.1508 1.3129 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004950003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = -66.513172 kcal Electronic energy + Delta-G solvation = -24136.159960 eV Core-core repulsion = 20421.497892 eV Total energy + Delta-G solvation = -3714.662068 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.53999 -39.14750 -38.72902 -36.82929 -35.16764 -33.71972 -32.26752 -31.68738 -29.88179 -28.77813 -27.23036 -25.65467 -24.55671 -23.56109 -22.42717 -21.40622 -19.98294 -18.23155 -18.08970 -17.74260 -17.53375 -16.35155 -16.01391 -15.79135 -15.44125 -14.90650 -14.71818 -14.53238 -14.50344 -14.25770 -13.76276 -13.54890 -13.09760 -12.91171 -12.78565 -12.64362 -12.30166 -12.21428 -11.79949 -11.69092 -11.48952 -11.34442 -11.18576 -11.04976 -10.90664 -10.51037 -10.46981 -10.35547 -9.92089 -9.21630 -9.04345 -8.99148 -8.67710 -8.13580 -7.50155 -6.53217 -4.14489 0.38338 1.14902 1.54651 1.84857 2.31766 2.67808 3.00399 3.12042 3.14165 3.20724 3.66548 3.85005 3.91612 4.41115 4.54559 4.57680 4.69864 4.81058 4.85352 4.89167 4.94354 5.06487 5.09270 5.15285 5.18825 5.34157 5.49954 5.53539 5.69469 5.80337 5.85448 5.97297 6.08684 6.09946 6.18180 6.29496 6.50820 6.59466 6.70408 6.86072 7.15620 7.29426 7.83179 8.59602 8.94473 9.71630 10.63912 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002756 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.544707 B =10156.390083 C =11397.890834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.206 4.206 5 C -0.067 4.067 6 C -0.037 4.037 7 C -0.027 4.027 8 C -0.147 4.147 9 C -0.078 4.078 10 C -0.050 4.050 11 C -0.106 4.106 12 C -0.079 4.079 13 C -0.196 4.196 14 C 0.457 3.543 15 O -0.545 6.545 16 O -0.204 6.204 17 C -0.370 4.370 18 H 0.100 0.900 19 C 0.041 3.959 20 N -0.855 5.855 21 Si 0.947 3.053 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.265 1.265 25 S 0.236 5.764 26 C -0.182 4.182 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 -21.907 -1.984 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.224 4.224 5 C -0.086 4.086 6 C -0.039 4.039 7 C -0.029 4.029 8 C -0.166 4.166 9 C -0.115 4.115 10 C -0.089 4.089 11 C -0.119 4.119 12 C -0.110 4.110 13 C -0.315 4.315 14 C 0.305 3.695 15 O -0.444 6.444 16 O -0.111 6.111 17 C -0.447 4.447 18 H 0.118 0.882 19 C -0.164 4.164 20 N -0.491 5.491 21 Si 0.771 3.229 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.189 1.189 25 S 0.509 5.491 26 C -0.301 4.301 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.385 -21.210 -1.539 21.713 hybrid contribution 1.139 0.572 -0.312 1.312 sum -3.246 -20.638 -1.851 20.974 Atomic orbital electron populations 1.23062 0.78378 1.03860 1.01535 1.86035 1.21408 1.27072 1.88712 1.19041 0.92167 0.84040 0.96719 1.21150 1.00025 0.91917 1.09343 1.20865 0.93082 0.97577 0.97111 1.17748 0.92116 0.89984 1.04072 1.19724 0.95582 0.91082 0.96557 1.20146 0.91169 0.97826 1.07443 1.20267 0.90329 0.99046 1.01856 1.20253 0.98772 0.89739 1.00105 1.19754 0.92696 0.94967 1.04526 1.19948 1.00773 0.89816 1.00448 1.23665 0.97816 0.95923 1.14135 1.19308 0.84472 0.85085 0.80633 1.90695 1.22358 1.79339 1.52015 1.83935 1.37413 1.18298 1.71495 1.21355 0.97748 0.78155 1.47426 0.88233 1.25420 0.94660 1.00421 0.95946 1.69991 1.02004 1.35083 1.41983 0.85609 0.78988 0.79753 0.78524 1.19695 1.20169 1.18904 1.84209 1.08880 0.93478 1.62577 1.24124 0.97572 0.97357 1.11038 0.92556 0.88308 0.92540 0.85116 0.85259 0.84955 0.89920 0.90056 0.90441 0.89827 0.83535 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.80 101.05 0.99 1.16 16 2 O -0.32 -3.20 10.48 -19.25 -0.20 -3.41 16 3 C 0.13 1.40 6.69 -39.10 -0.26 1.14 16 4 C -0.21 -2.23 9.02 -39.41 -0.36 -2.58 16 5 C -0.07 -0.84 9.74 -39.38 -0.38 -1.23 16 6 C -0.04 -0.51 5.84 -105.05 -0.61 -1.12 16 7 C -0.03 -0.32 5.71 -104.26 -0.60 -0.92 16 8 C -0.15 -1.61 9.59 -39.46 -0.38 -1.99 16 9 C -0.08 -0.78 5.74 -28.34 -0.16 -0.94 16 10 C -0.05 -0.55 6.24 -27.46 -0.17 -0.72 16 11 C -0.11 -1.62 5.77 -104.37 -0.60 -2.23 16 12 C -0.08 -1.42 9.77 -40.64 -0.40 -1.81 16 13 C -0.20 -4.18 6.43 -36.95 -0.24 -4.42 16 14 C 0.46 12.04 7.85 33.90 0.27 12.31 16 15 O -0.54 -15.28 16.05 -19.42 -0.31 -15.59 16 16 O -0.20 -5.96 9.58 -22.13 -0.21 -6.17 16 17 C -0.37 -10.95 9.65 30.93 0.30 -10.65 16 18 H 0.10 2.95 6.86 -52.49 -0.36 2.59 16 19 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 20 N -0.85 -24.62 13.67 55.48 0.76 -23.86 16 21 Si 0.95 20.99 29.55 -169.99 -5.02 15.97 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.26 -5.78 7.11 56.52 0.40 -5.37 16 25 S 0.24 4.31 22.72 -107.50 -2.44 1.87 16 26 C -0.18 -2.87 6.39 -35.59 -0.23 -3.10 16 27 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.32 7.64 -51.93 -0.40 -0.08 16 30 H 0.13 1.09 6.26 -52.49 -0.33 0.77 16 31 H 0.13 1.53 7.84 -52.49 -0.41 1.12 16 32 H 0.13 1.19 8.05 -52.49 -0.42 0.77 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.60 8.03 -51.93 -0.42 0.19 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.15 2.51 8.02 -52.49 -0.42 2.09 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -33.93 344.33 -9.15 -43.08 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.98 Total: -1.02 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.93 Total: -16.07 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.76 Total: -23.86 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.73 Total: -25.17 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -2.44 Total: 1.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.93 -9.15 -43.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004950003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.436 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds