Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35842 * 116.99961 * 2 1 4 4 C 1.38928 * 119.72268 * 359.97438 * 3 2 1 5 5 C 1.38013 * 119.86858 * 180.56834 * 4 3 2 6 6 C 1.39011 * 119.55044 * 359.89520 * 5 4 3 7 7 C 1.39985 * 120.77567 * 359.06408 * 6 5 4 8 8 C 1.37960 * 119.10887 * 1.52782 * 7 6 5 9 9 C 1.50305 * 120.66864 * 182.31891 * 7 6 5 10 10 C 1.52485 * 112.61130 * 324.98787 * 9 7 6 11 11 C 1.52078 * 109.70163 * 48.14942 * 10 9 7 12 12 C 1.36792 * 126.26266 * 147.35755 * 11 10 9 13 13 C 1.36750 * 115.37172 * 178.32143 * 12 11 10 14 14 C 1.46142 * 125.15659 * 180.02562 * 13 12 11 15 15 O 1.21701 * 120.00115 * 0.02562 * 14 13 12 16 16 O 1.34921 * 119.99930 * 179.97438 * 14 13 12 17 17 C 1.34844 * 116.99806 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00450 * 359.73028 * 17 16 14 19 19 C 1.38781 * 119.99982 * 179.97438 * 17 16 14 20 20 N 1.31433 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46812 * 90.00203 * 21 19 17 23 23 H 1.48494 * 109.47357 * 210.00278 * 21 19 17 24 24 H 1.48502 * 109.47120 * 330.00997 * 21 19 17 25 25 S 1.75891 * 109.69071 * 0.30889 * 13 12 11 26 26 C 1.38485 * 120.26652 * 326.24811 * 11 10 9 27 27 H 1.09002 * 109.47194 * 60.00113 * 1 2 3 28 28 H 1.09007 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47333 * 299.99681 * 1 2 3 30 30 H 1.08001 * 120.06447 * 0.58731 * 4 3 2 31 31 H 1.08000 * 120.22444 * 179.91549 * 5 4 3 32 32 H 1.07997 * 119.93349 * 178.94467 * 8 7 6 33 33 H 1.09004 * 108.85434 * 85.79131 * 9 7 6 34 34 H 1.08997 * 108.85743 * 204.28264 * 9 7 6 35 35 H 1.09005 * 109.43163 * 288.07964 * 10 9 7 36 36 H 1.08999 * 109.43211 * 168.22316 * 10 9 7 37 37 H 1.07999 * 122.31736 * 358.34160 * 12 11 10 38 38 H 0.97005 * 120.00065 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2104 0.0000 4 6 1.2833 2.3718 -0.0005 5 6 1.9067 3.6031 -0.0124 6 6 3.2953 3.6685 -0.0215 7 6 4.0675 2.5011 0.0008 8 6 3.4325 1.2763 0.0001 9 6 5.5681 2.5752 0.0432 10 6 6.1194 3.7552 -0.7497 11 6 5.3607 5.0204 -0.3803 12 6 5.8718 6.2887 -0.3435 13 6 4.9789 7.2710 -0.0148 14 6 5.2934 8.6946 0.0863 15 8 6.4256 9.0845 -0.1305 16 8 4.3282 9.5767 0.4191 17 6 4.6852 10.8747 0.4955 18 1 5.7062 11.1666 0.2985 19 6 3.7417 11.8352 0.8323 20 7 2.5003 11.4795 1.0772 21 14 4.2363 13.6334 0.9389 22 1 4.0536 14.2764 -0.3871 23 1 3.3872 14.3216 1.9440 24 1 5.6616 13.7315 1.3442 25 16 3.3964 6.5603 0.2757 26 6 4.0148 4.9588 -0.0599 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2051 2.3113 0.0086 31 1 1.3197 4.5097 -0.0143 32 1 4.0154 0.3671 0.0000 33 1 5.8870 2.6687 1.0814 34 1 5.9781 1.6533 -0.3691 35 1 6.0038 3.5613 -1.8161 36 1 7.1765 3.8856 -0.5180 37 1 6.9087 6.4999 -0.5594 38 1 1.8409 12.1508 1.3129 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004950003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = -85.909583 kcal Electronic energy + Delta-G solvation = -24137.001052 eV Core-core repulsion = 20421.497892 eV Total energy + Delta-G solvation = -3715.503160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.076 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44347 -41.03932 -39.85524 -38.05228 -37.13940 -34.74476 -34.38256 -32.75483 -30.81377 -29.92795 -28.21224 -27.38355 -25.81169 -24.81247 -23.39010 -22.64463 -21.43720 -20.06733 -19.49882 -19.21896 -18.56835 -17.65299 -17.19189 -16.79411 -16.67630 -16.58274 -16.37446 -16.07489 -15.63091 -15.48184 -14.77472 -14.59400 -14.47881 -14.06398 -13.91786 -13.68252 -13.54873 -13.49437 -13.25253 -13.07510 -12.61991 -12.52363 -12.46010 -12.22615 -12.14034 -12.06822 -12.00733 -11.81698 -11.49604 -11.31116 -10.76742 -10.23203 -9.85355 -9.53991 -8.64244 -8.61716 -6.39084 -0.94669 0.26791 0.32746 0.46031 0.90523 1.27441 1.31438 1.44634 1.49907 2.02644 2.05240 2.31775 2.63309 2.72896 2.93473 3.56229 3.65086 3.78602 3.93644 4.01934 4.13278 4.24662 4.35444 4.41696 4.42138 4.45620 4.50447 4.61174 4.76311 4.77801 4.93339 4.97057 5.03224 5.04726 5.11101 5.25861 5.26516 5.29765 5.45440 5.59144 5.66929 5.73378 6.38387 6.48019 6.81669 7.61070 8.58830 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002756 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.544707 B =10156.390083 C =11397.890834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.133 3.867 4 C -0.209 4.209 5 C -0.072 4.072 6 C -0.077 4.077 7 C -0.020 4.020 8 C -0.151 4.151 9 C -0.079 4.079 10 C -0.046 4.046 11 C -0.122 4.122 12 C -0.044 4.044 13 C -0.264 4.264 14 C 0.463 3.537 15 O -0.574 6.574 16 O -0.233 6.233 17 C -0.421 4.421 18 H 0.085 0.915 19 C -0.003 4.003 20 N -0.896 5.896 21 Si 1.022 2.978 22 H -0.258 1.258 23 H -0.257 1.257 24 H -0.262 1.262 25 S 0.213 5.787 26 C -0.141 4.141 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.157 0.843 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 -25.309 -2.281 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.087 3.913 4 C -0.227 4.227 5 C -0.091 4.091 6 C -0.080 4.080 7 C -0.022 4.022 8 C -0.170 4.170 9 C -0.116 4.116 10 C -0.085 4.085 11 C -0.133 4.133 12 C -0.077 4.077 13 C -0.382 4.382 14 C 0.312 3.688 15 O -0.475 6.475 16 O -0.141 6.141 17 C -0.496 4.496 18 H 0.103 0.897 19 C -0.204 4.204 20 N -0.533 5.533 21 Si 0.840 3.160 22 H -0.182 1.182 23 H -0.181 1.181 24 H -0.187 1.187 25 S 0.486 5.514 26 C -0.260 4.260 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.082 0.918 30 H 0.171 0.829 31 H 0.145 0.855 32 H 0.175 0.825 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.171 0.829 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.521 -24.628 -1.837 25.107 hybrid contribution 1.062 1.091 -0.264 1.546 sum -3.459 -23.537 -2.101 23.882 Atomic orbital electron populations 1.23383 0.76395 1.05759 1.02317 1.86042 1.23471 1.26392 1.88143 1.19279 0.92619 0.84500 0.94914 1.21367 1.01336 0.91164 1.08881 1.20995 0.92880 0.98441 0.96770 1.17888 0.92877 0.89419 1.07770 1.19979 0.96664 0.90545 0.95040 1.20426 0.91437 0.98271 1.06831 1.20387 0.88904 0.99986 1.02283 1.20426 0.99391 0.87606 1.01079 1.20182 0.92858 0.95568 1.04716 1.20250 1.00497 0.90232 0.96719 1.23327 1.00358 0.93883 1.20664 1.20130 0.83719 0.86739 0.78172 1.90629 1.23299 1.80542 1.53019 1.83960 1.38458 1.18615 1.73103 1.21544 0.97944 0.79151 1.50981 0.89706 1.26646 0.94290 1.05157 0.94289 1.70074 1.03164 1.37186 1.42847 0.84570 0.78861 0.73046 0.79510 1.18231 1.18070 1.18659 1.84156 1.08112 0.95610 1.63474 1.24539 0.97850 0.96779 1.06876 0.91717 0.86031 0.91772 0.82857 0.85505 0.82519 0.89408 0.86444 0.89148 0.87648 0.82869 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.80 113.37 1.11 1.25 16 2 O -0.33 -5.37 10.48 -91.78 -0.96 -6.33 16 3 C 0.13 2.50 6.69 22.58 0.15 2.65 16 4 C -0.21 -3.98 9.02 22.38 0.20 -3.77 16 5 C -0.07 -1.69 9.74 22.40 0.22 -1.47 16 6 C -0.08 -1.99 5.84 -20.14 -0.12 -2.11 16 7 C -0.02 -0.40 5.71 -19.63 -0.11 -0.52 16 8 C -0.15 -2.70 9.59 22.35 0.21 -2.49 16 9 C -0.08 -1.23 5.74 29.55 0.17 -1.06 16 10 C -0.05 -0.87 6.24 30.12 0.19 -0.68 16 11 C -0.12 -3.55 5.77 -19.70 -0.11 -3.66 16 12 C -0.04 -1.60 9.77 21.58 0.21 -1.39 16 13 C -0.26 -11.89 6.43 23.97 0.15 -11.73 16 14 C 0.46 26.14 7.85 69.87 0.55 26.69 16 15 O -0.57 -34.32 16.05 19.18 0.31 -34.01 16 16 O -0.23 -14.63 9.58 9.50 0.09 -14.54 16 17 C -0.42 -26.53 9.65 67.95 0.66 -25.88 16 18 H 0.09 5.40 6.86 -2.91 -0.02 5.38 16 19 C 0.00 -0.16 5.49 84.88 0.47 0.30 16 20 N -0.90 -53.76 13.67 21.63 0.30 -53.47 16 21 Si 1.02 44.09 29.55 68.60 2.03 46.12 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 25 S 0.21 8.19 22.72 -56.49 -1.28 6.91 16 26 C -0.14 -4.36 6.39 24.86 0.16 -4.20 16 27 H 0.06 0.50 7.65 -2.39 -0.02 0.48 16 28 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.50 7.64 -2.39 -0.02 0.48 16 30 H 0.15 2.12 6.26 -2.91 -0.02 2.10 16 31 H 0.13 2.97 7.84 -2.91 -0.02 2.95 16 32 H 0.16 2.03 8.05 -2.91 -0.02 2.00 16 33 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.12 1.06 8.03 -2.39 -0.02 1.04 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.15 5.25 8.02 -2.91 -0.02 5.23 16 38 H 0.28 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -79.69 344.33 5.69 -74.00 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.11 Total: 9.39 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.11 Total: -28.06 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.30 Total: -53.47 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -0.56 Total: -54.88 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 8.19 SS G_CDS: -1.28 Total: 6.91 kcal Total: -79.69 5.69 -74.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004950003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.907 kcal (2) G-P(sol) polarization free energy of solvation -79.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds