Wall clock time and date at job start Tue Mar 31 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00266 * 2 1 4 4 H 1.48502 * 109.47317 * 270.00577 * 3 2 1 5 5 H 1.48506 * 109.46782 * 30.00375 * 3 2 1 6 6 H 1.48501 * 109.47121 * 149.99751 * 3 2 1 7 7 C 1.37877 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00048 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99885 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46963 * 180.02562 * 9 7 2 11 11 C 1.35778 * 119.83969 * 89.99632 * 10 9 7 12 12 N 1.29973 * 121.83060 * 180.02562 * 11 10 9 13 13 C 1.35099 * 121.72146 * 359.97438 * 12 11 10 14 14 S 1.75860 * 130.60707 * 180.02562 * 13 12 11 15 15 C 1.75309 * 92.33442 * 179.78447 * 14 13 12 16 16 C 1.33284 * 111.17183 * 0.33604 * 15 14 13 17 17 C 1.48254 * 122.80126 * 179.86230 * 16 15 14 18 18 C 1.39413 * 120.10217 * 309.71145 * 17 16 15 19 19 C 1.37975 * 119.89337 * 179.97438 * 18 17 16 20 20 C 1.38549 * 120.10620 * 0.02562 * 19 18 17 21 21 F 1.35092 * 119.89453 * 179.97438 * 20 19 18 22 22 C 1.38546 * 120.20290 * 0.02562 * 20 19 18 23 23 C 1.37972 * 120.10624 * 359.97438 * 22 20 19 24 24 C 1.38990 * 119.50330 * 359.97438 * 13 12 11 25 25 C 1.34736 * 119.83611 * 270.00133 * 10 9 7 26 26 O 1.21901 * 120.62803 * 359.97438 * 25 10 9 27 27 H 0.97001 * 119.99744 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47217 * 60.00128 * 9 7 2 29 29 H 1.09002 * 109.46905 * 299.99521 * 9 7 2 30 30 H 1.08000 * 119.08954 * 0.02562 * 11 10 9 31 31 H 1.07997 * 124.41664 * 180.24133 * 15 14 13 32 32 H 1.08003 * 120.05598 * 359.95745 * 18 17 16 33 33 H 1.08000 * 119.94884 * 179.72599 * 19 18 17 34 34 H 1.08000 * 119.94215 * 179.97438 * 22 20 19 35 35 H 1.07996 * 120.05118 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0022 11 6 4.2246 -3.2114 -1.1805 12 7 4.6571 -4.4362 -1.2267 13 6 4.9076 -5.1439 -0.1034 14 16 5.4896 -6.7901 0.1064 15 6 5.4501 -6.6576 1.8540 16 6 5.0195 -5.4555 2.2360 17 6 4.8831 -5.0665 3.6601 18 6 4.1959 -5.8929 4.5479 19 6 4.0719 -5.5269 5.8725 20 6 4.6286 -4.3400 6.3205 21 9 4.5043 -3.9855 7.6182 22 6 5.3115 -3.5150 5.4416 23 6 5.4406 -3.8726 4.1153 24 6 4.7003 -4.5538 1.1378 25 6 4.2238 -3.2080 1.1660 26 8 4.0244 -2.6420 2.2271 27 1 -0.4850 0.8401 0.0004 28 1 3.8753 -0.6804 0.8888 29 1 3.8746 -0.6800 -0.8912 30 1 4.0388 -2.6852 -2.1051 31 1 5.7358 -7.4476 2.5326 32 1 3.7610 -6.8181 4.1995 33 1 3.5359 -6.1644 6.5601 34 1 5.7435 -2.5904 5.7953 35 1 5.9735 -3.2290 3.4310 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005318280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:38 Heat of formation + Delta-G solvation = 6.782717 kcal Electronic energy + Delta-G solvation = -24739.046232 eV Core-core repulsion = 20936.394958 eV Total energy + Delta-G solvation = -3802.651274 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.058 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.83952 -41.24895 -39.06548 -37.15171 -36.44182 -34.15206 -32.56279 -31.10678 -30.51908 -28.94775 -28.41594 -25.09050 -23.84119 -23.30615 -22.77368 -21.90004 -19.98529 -18.77095 -17.64591 -17.43334 -17.33011 -16.55423 -16.09052 -15.77647 -15.50759 -15.45598 -15.37771 -14.37237 -14.20155 -13.89874 -13.57778 -13.44639 -13.30409 -13.07023 -12.87596 -12.68696 -12.41151 -12.23811 -12.19844 -12.04505 -11.30123 -11.03180 -10.98259 -10.85432 -10.49533 -9.90639 -9.88103 -9.54232 -9.33702 -8.98971 -8.85084 -8.72908 -8.21351 -7.69220 -6.33616 -4.38768 0.48070 1.00315 1.22154 1.35336 1.88412 1.99697 2.31228 3.03928 3.10774 3.19920 3.23485 3.67341 3.94101 4.16305 4.31516 4.39114 4.60712 4.75158 4.82338 4.92098 4.97295 5.15035 5.24291 5.31271 5.42740 5.48098 5.83636 5.94107 6.01399 6.08012 6.15644 6.19346 6.34810 6.45706 6.59367 6.73419 6.93251 7.06113 7.18841 7.97040 8.12305 8.35454 8.65973 9.20855 10.78645 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.004926 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.603925 B = 5682.742233 C = 8018.369146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.083 3.917 3 Si 0.874 3.126 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.194 3.806 10 N -0.503 5.503 11 C 0.408 3.592 12 N -0.534 5.534 13 C 0.096 3.904 14 S 0.175 5.825 15 C -0.233 4.233 16 C 0.011 3.989 17 C -0.041 4.041 18 C -0.075 4.075 19 C -0.161 4.161 20 C 0.099 3.901 21 F -0.144 7.144 22 C -0.154 4.154 23 C -0.030 4.030 24 C -0.239 4.239 25 C 0.551 3.449 26 O -0.507 6.507 27 H 0.270 0.730 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.210 0.790 31 H 0.174 0.826 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.920 -11.712 3.199 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.097 0.903 9 C 0.075 3.925 10 N -0.218 5.218 11 C 0.119 3.881 12 N -0.259 5.259 13 C -0.138 4.138 14 S 0.438 5.562 15 C -0.368 4.368 16 C -0.001 4.001 17 C -0.043 4.043 18 C -0.093 4.093 19 C -0.180 4.180 20 C 0.080 3.920 21 F -0.122 7.122 22 C -0.173 4.173 23 C -0.049 4.049 24 C -0.256 4.256 25 C 0.345 3.655 26 O -0.382 6.382 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.226 0.774 31 H 0.191 0.809 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.191 -12.863 2.354 18.574 hybrid contribution -0.536 2.503 1.768 3.111 sum 12.655 -10.360 4.122 16.866 Atomic orbital electron populations 1.69865 1.06255 1.27593 1.48217 1.24791 0.94802 0.98960 0.93692 0.86878 0.80604 0.83613 0.78907 1.19563 1.20473 1.18734 1.21037 0.87635 0.95551 1.54198 0.90335 1.20321 0.97411 0.75110 0.99698 1.46863 1.51105 1.17462 1.06418 1.24989 0.84534 0.87613 0.90990 1.68016 1.24510 1.06329 1.27064 1.23821 0.99061 0.99368 0.91567 1.83838 1.66198 1.06153 0.99993 1.25138 1.12011 1.01163 0.98460 1.17857 0.98904 0.91825 0.91512 1.18351 0.99781 0.95456 0.90742 1.20990 0.97221 0.99297 0.91808 1.20942 1.03308 0.96772 0.96932 1.17777 1.00473 0.95346 0.78422 1.91475 1.94343 1.92011 1.34394 1.21028 1.02173 1.00476 0.93638 1.20974 0.96009 0.93919 0.93983 1.20654 1.15001 0.97028 0.92945 1.16499 0.79307 0.85693 0.84048 1.90909 1.51420 1.67675 1.28168 0.91993 0.92164 0.93514 0.77364 0.80879 0.84993 0.84792 0.84775 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.43 0.77 -24.89 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 19.58 27.47 -169.99 -4.67 14.91 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 7 C -0.55 -14.43 9.94 -34.44 -0.34 -14.78 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.19 4.20 4.18 -5.19 -0.02 4.18 16 10 N -0.50 -9.86 2.57 -121.78 -0.31 -10.17 16 11 C 0.41 6.55 11.48 -90.14 -1.04 5.51 16 12 N -0.53 -8.66 10.42 -12.64 -0.13 -8.79 16 13 C 0.10 1.55 7.68 -15.83 -0.12 1.43 16 14 S 0.17 2.13 23.22 -107.50 -2.50 -0.37 16 15 C -0.23 -2.79 10.65 29.00 0.31 -2.48 16 16 C 0.01 0.17 5.50 -104.56 -0.57 -0.41 16 17 C -0.04 -0.62 5.24 -104.91 -0.55 -1.17 16 18 C -0.07 -0.98 9.59 -39.24 -0.38 -1.35 16 19 C -0.16 -2.06 10.01 -39.56 -0.40 -2.45 16 20 C 0.10 1.41 7.30 -39.35 -0.29 1.12 16 21 F -0.14 -2.05 17.26 2.25 0.04 -2.01 16 22 C -0.15 -2.25 10.01 -39.57 -0.40 -2.64 16 23 C -0.03 -0.47 7.62 -39.24 -0.30 -0.77 16 24 C -0.24 -4.28 5.99 -104.91 -0.63 -4.91 16 25 C 0.55 11.45 7.47 -14.52 -0.11 11.34 16 26 O -0.51 -11.81 13.37 5.01 0.07 -11.75 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.06 1.39 6.49 -51.93 -0.34 1.06 16 29 H 0.05 0.87 7.44 -51.93 -0.39 0.48 16 30 H 0.21 2.51 8.02 -52.49 -0.42 2.09 16 31 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.13 2.10 7.37 -52.49 -0.39 1.72 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -31.89 325.08 -9.57 -41.46 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.81 Total: 1.96 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -4.93 Total: -5.24 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.33 Total: -43.86 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.67 Total: 14.91 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.50 Total: -0.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.89 -9.57 -41.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005318280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.245 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds