Wall clock time and date at job start Tue Mar 31 2020 05:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00084 * 2 1 4 4 H 1.48504 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47431 * 300.00440 * 3 2 1 6 6 H 1.48503 * 109.46930 * 60.00413 * 3 2 1 7 7 C 1.37882 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99935 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47111 * 180.02562 * 9 7 2 11 11 P 1.60996 * 123.00258 * 175.53608 * 10 9 7 12 12 O 1.48002 * 109.47445 * 42.33484 * 11 10 9 13 13 N 1.68299 * 109.47018 * 282.33862 * 11 10 9 14 14 C 1.46897 * 111.00270 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47153 * 219.99967 * 14 13 11 16 16 Cl 1.80309 * 109.47323 * 179.97438 * 15 14 13 17 17 C 1.46904 * 111.00080 * 303.95302 * 13 11 10 18 18 C 1.52997 * 109.47168 * 74.99639 * 17 13 11 19 19 Cl 1.80299 * 109.47082 * 180.02562 * 18 17 13 20 20 N 1.68295 * 109.47541 * 162.33834 * 11 10 9 21 21 C 1.46898 * 110.99897 * 14.54880 * 20 11 10 22 22 C 1.46902 * 110.99945 * 306.74244 * 20 11 10 23 23 H 0.96998 * 119.99744 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47359 * 60.00224 * 9 7 2 25 25 H 1.09003 * 109.47682 * 300.00518 * 9 7 2 26 26 H 1.09003 * 109.47029 * 339.99252 * 14 13 11 27 27 H 1.08997 * 109.47452 * 99.99578 * 14 13 11 28 28 H 1.09001 * 109.47305 * 299.99650 * 15 14 13 29 29 H 1.08997 * 109.47259 * 59.99493 * 15 14 13 30 30 H 1.08996 * 109.47039 * 195.00329 * 17 13 11 31 31 H 1.09001 * 109.46946 * 315.00006 * 17 13 11 32 32 H 1.09001 * 109.47212 * 300.00818 * 18 17 13 33 33 H 1.09001 * 109.46888 * 60.00331 * 18 17 13 34 34 H 1.09003 * 117.63433 * 3.55533 * 21 20 11 35 35 H 1.09009 * 117.63251 * 149.36486 * 21 20 11 36 36 H 1.08997 * 117.63671 * 210.63412 * 22 20 11 37 37 H 1.09002 * 117.63299 * 356.25550 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 15 1.7262 -5.1265 0.1046 12 8 0.5438 -5.3529 -0.7564 13 7 1.3352 -5.4887 1.7009 14 6 0.9165 -6.8903 1.8355 15 6 -0.2622 -6.9794 2.8069 16 17 -0.7767 -8.6997 2.9715 17 6 2.4575 -5.1865 2.5994 18 6 2.5619 -3.6725 2.7936 19 17 3.9398 -3.3015 3.8957 20 7 2.9877 -6.1183 -0.4028 21 6 4.2501 -5.3704 -0.4721 22 6 3.4635 -5.7245 -1.7357 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 0.6142 -7.2743 0.8612 27 1 1.7478 -7.4828 2.2176 28 1 0.0400 -6.5954 3.7812 29 1 -1.0935 -6.3869 2.4248 30 1 2.2901 -5.6659 3.5638 31 1 3.3833 -5.5615 2.1631 32 1 2.7293 -3.1931 1.8290 33 1 1.6361 -3.2974 3.2298 34 1 4.2404 -4.3306 -0.1452 35 1 5.1732 -5.9179 -0.2812 36 1 3.8666 -6.5059 -2.3799 37 1 2.9318 -4.9209 -2.2453 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005572673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:09 Heat of formation + Delta-G solvation = -113.724479 kcal Electronic energy + Delta-G solvation = -22930.397807 eV Core-core repulsion = 19294.357532 eV Total energy + Delta-G solvation = -3636.040275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 330.045 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.84084 -37.54495 -36.35690 -36.02009 -35.65646 -32.85758 -32.67032 -31.53029 -28.24593 -27.61229 -24.82836 -23.28468 -23.04438 -22.83246 -22.15569 -18.39138 -17.12472 -17.02089 -16.42232 -16.02381 -15.35296 -15.24090 -14.89776 -14.57927 -14.17211 -14.02771 -13.70406 -13.39358 -13.36385 -12.89164 -12.70086 -12.44820 -12.07370 -11.97352 -11.74591 -11.66084 -11.42279 -11.10514 -11.03663 -10.79526 -10.49321 -10.43435 -10.39992 -10.35161 -10.24314 -10.06280 -9.94375 -9.67545 -9.28809 -9.23635 -8.59050 -6.27830 -4.33736 1.43305 2.17176 2.27991 3.19502 3.27417 3.31259 3.39997 3.77539 3.86198 4.26697 4.33418 4.43278 4.56234 4.58482 4.69444 4.91264 5.05752 5.08869 5.12869 5.23333 5.30297 5.35376 5.50817 5.56795 5.65711 5.70659 5.90742 6.04262 6.39090 6.69396 7.05150 7.29650 7.66397 7.86367 8.06044 8.74977 9.32463 10.81913 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004537 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.360951 B = 6170.250039 C = 6433.025756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.073 0.927 9 C 0.252 3.748 10 O -0.747 6.747 11 P 2.334 2.666 12 O -1.009 7.009 13 N -0.898 5.898 14 C 0.056 3.944 15 C -0.023 4.023 16 Cl -0.187 7.187 17 C 0.033 3.967 18 C -0.065 4.065 19 Cl -0.179 7.179 20 N -0.876 5.876 21 C -0.067 4.067 22 C -0.020 4.020 23 H 0.268 0.732 24 H 0.033 0.967 25 H 0.018 0.982 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.881 -11.672 4.754 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.091 0.909 9 C 0.181 3.819 10 O -0.771 6.771 11 P 2.500 2.500 12 O -1.101 7.101 13 N -0.723 5.723 14 C -0.071 4.071 15 C -0.087 4.087 16 Cl -0.161 7.161 17 C -0.094 4.094 18 C -0.128 4.128 19 Cl -0.153 7.153 20 N -0.701 5.701 21 C -0.194 4.194 22 C -0.147 4.147 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.276 -12.085 5.387 14.644 hybrid contribution 0.958 0.803 0.277 1.280 sum 7.234 -11.282 5.663 14.549 Atomic orbital electron populations 1.69964 1.06087 1.27634 1.49046 1.24960 0.94979 0.99463 0.94750 0.86302 0.79995 0.82497 0.77849 1.19357 1.20670 1.20711 1.21156 0.94244 0.88789 1.52549 0.90910 1.20163 0.84937 0.79403 0.97350 1.87798 1.59706 1.35576 1.93982 0.92906 0.53900 0.50955 0.52272 1.95107 1.55522 1.88886 1.70551 1.66665 1.44865 1.28786 1.31971 1.22210 0.97880 0.84873 1.02183 1.24408 1.00007 0.82058 1.02208 1.98710 1.92446 1.26402 1.98502 1.22562 0.90372 0.96756 0.99745 1.25095 0.92076 0.95645 0.99934 1.98694 1.52045 1.95403 1.69114 1.75554 1.19339 1.56075 1.19173 1.24423 0.92911 0.99936 1.02118 1.24045 1.01294 1.03132 0.86193 0.92235 0.94957 0.96408 0.88575 0.90654 0.88500 0.87374 0.88387 0.92334 0.84433 0.87230 0.85206 0.85384 0.85052 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.53 -13.58 9.28 -34.44 -0.32 -13.90 16 8 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.25 6.09 5.32 36.00 0.19 6.28 16 10 O -0.75 -14.66 5.67 -2.91 -0.02 -14.67 16 11 P 2.33 41.27 3.18 -42.89 -0.14 41.13 16 12 O -1.01 -22.95 17.97 0.05 0.00 -22.95 16 13 N -0.90 -13.38 4.64 -113.78 -0.53 -13.90 16 14 C 0.06 0.73 5.19 -3.83 -0.02 0.71 16 15 C -0.02 -0.27 6.98 37.16 0.26 -0.01 16 16 Cl -0.19 -2.22 29.15 -51.86 -1.51 -3.73 16 17 C 0.03 0.42 4.82 -3.82 -0.02 0.40 16 18 C -0.06 -0.95 6.69 37.16 0.25 -0.70 16 19 Cl -0.18 -2.50 29.15 -51.86 -1.51 -4.01 16 20 N -0.88 -12.71 8.25 -113.78 -0.94 -13.65 16 21 C -0.07 -0.79 9.87 -3.83 -0.04 -0.83 16 22 C -0.02 -0.25 10.43 -3.83 -0.04 -0.29 16 23 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.10 1.41 7.19 -51.93 -0.37 1.04 16 27 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 31 H 0.06 0.68 7.20 -51.93 -0.37 0.31 16 32 H 0.14 2.36 4.28 -51.93 -0.22 2.14 16 33 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.13 1.63 6.54 -51.93 -0.34 1.29 16 35 H 0.13 1.15 8.14 -51.92 -0.42 0.72 16 36 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.12 1.62 7.89 -51.93 -0.41 1.21 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -30.89 348.06 -8.55 -39.44 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.04 Total: 2.81 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 0.17 Total: -6.83 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.73 Total: -51.58 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.02 Total: -37.62 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 15 Polarization: 41.27 SS G_CDS: -0.14 Total: 41.13 kcal Atomic # 17 Polarization: -4.72 SS G_CDS: -3.02 Total: -7.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.89 -8.55 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005572673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.287 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds