Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00384 * 2 1 4 4 H 1.48502 * 109.46985 * 269.99997 * 3 2 1 5 5 H 1.48500 * 109.47112 * 29.99632 * 3 2 1 6 6 H 1.48497 * 109.47187 * 150.00155 * 3 2 1 7 7 C 1.37881 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99734 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99674 * 89.99922 * 10 9 7 12 12 S 1.71202 * 120.00205 * 4.90326 * 11 10 9 13 13 N 1.34781 * 119.99912 * 184.89647 * 11 10 9 14 14 C 1.34773 * 120.00140 * 174.71529 * 13 11 10 15 15 O 1.21683 * 119.99721 * 359.97438 * 14 13 11 16 16 C 1.46538 * 120.00218 * 180.02562 * 14 13 11 17 17 C 1.36618 * 125.99632 * 180.02562 * 16 14 13 18 18 C 1.40321 * 106.70746 * 180.02562 * 17 16 14 19 19 C 1.35158 * 107.12448 * 359.97438 * 18 17 16 20 20 O 1.33928 * 108.77402 * 359.97438 * 19 18 17 21 21 C 1.39872 * 120.00391 * 270.00433 * 10 9 7 22 22 C 1.38886 * 120.07303 * 110.87303 * 21 10 9 23 23 C 1.38114 * 119.92684 * 179.81172 * 22 21 10 24 24 C 1.38287 * 120.07066 * 0.45151 * 23 22 21 25 25 C 1.38281 * 120.14234 * 359.78121 * 24 23 22 26 26 C 1.38104 * 120.07648 * 0.02562 * 25 24 23 27 27 H 0.97007 * 119.99296 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46995 * 60.00394 * 9 7 2 29 29 H 1.08997 * 109.47559 * 300.00307 * 9 7 2 30 30 H 0.97006 * 119.99882 * 354.71944 * 13 11 10 31 31 H 1.08005 * 126.64504 * 0.02562 * 17 16 14 32 32 H 1.08005 * 126.44003 * 180.02562 * 18 17 16 33 33 H 1.07999 * 125.61294 * 180.26561 * 19 18 17 34 34 H 1.07996 * 120.03482 * 0.02562 * 22 21 10 35 35 H 1.08003 * 119.96557 * 180.23416 * 23 22 21 36 36 H 1.08003 * 119.92467 * 179.76581 * 24 23 22 37 37 H 1.08005 * 119.96075 * 179.97438 * 25 24 23 38 38 H 1.07993 * 120.03881 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 7 2.2027 -3.6128 0.0015 11 6 2.6415 -4.1244 1.1686 12 16 1.9931 -3.5590 2.6488 13 7 3.5906 -5.0814 1.1705 14 6 4.1058 -5.5173 2.3371 15 8 3.7143 -5.0465 3.3886 16 6 5.1381 -6.5574 2.3391 17 6 5.7416 -7.0874 3.4442 18 6 6.6592 -8.0437 2.9830 19 6 6.5767 -8.0563 1.6340 20 8 5.6585 -7.1601 1.2499 21 6 2.6564 -4.1449 -1.2099 22 6 3.9768 -3.9618 -1.5995 23 6 4.4225 -4.4919 -2.7945 24 6 3.5532 -5.1964 -3.6071 25 6 2.2366 -5.3763 -3.2243 26 6 1.7856 -4.8522 -2.0288 27 1 -0.4849 0.8402 -0.0004 28 1 0.6239 -2.5575 -0.8880 29 1 0.6245 -2.5563 0.8919 30 1 3.9029 -5.4564 0.3321 31 1 5.5498 -6.8219 4.4733 32 1 7.3086 -8.6554 3.5917 33 1 7.1527 -8.6886 0.9746 34 1 4.6552 -3.4085 -0.9671 35 1 5.4502 -4.3531 -3.0962 36 1 3.9033 -5.6066 -4.5428 37 1 1.5601 -5.9266 -3.8615 38 1 0.7572 -4.9928 -1.7307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005657708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = 61.271855 kcal Electronic energy + Delta-G solvation = -25284.701537 eV Core-core repulsion = 21607.873395 eV Total energy + Delta-G solvation = -3676.828143 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.88430 -40.72181 -39.34314 -37.18194 -34.76311 -33.25907 -32.67553 -31.00290 -30.47136 -30.00955 -27.66198 -25.21158 -23.50198 -23.04520 -22.46992 -21.95753 -21.02212 -20.64455 -19.09055 -18.05376 -16.87434 -16.67041 -16.52816 -16.50704 -15.53803 -15.32430 -15.20773 -14.79529 -14.56522 -14.23567 -13.82487 -13.46826 -13.40112 -13.20229 -12.91157 -12.86330 -12.57276 -11.99735 -11.78216 -11.47159 -11.22764 -10.99658 -10.85282 -10.66667 -10.34277 -10.28078 -10.20602 -9.97665 -9.12818 -9.00712 -8.93810 -8.59398 -8.49244 -7.10918 -6.10928 -5.87980 -4.15421 0.77399 1.13306 1.32385 1.69958 2.19870 2.30247 2.56823 3.08334 3.19646 3.28797 3.36413 3.40121 3.53667 3.69676 4.40328 4.43926 4.68141 4.79470 4.89370 4.90093 5.06046 5.25113 5.36060 5.40687 5.47974 5.50263 5.54325 5.66274 5.91108 5.95506 6.09081 6.29546 6.37938 6.43300 6.47171 6.62228 6.82838 6.94179 7.25610 7.38428 7.75073 7.81853 7.97515 8.04332 8.81901 9.47549 10.97619 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.004606 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.532851 B = 6077.479025 C = 7559.887680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.236 3.764 10 N -0.490 5.490 11 C 0.518 3.482 12 S -0.511 6.511 13 N -0.646 5.646 14 C 0.579 3.421 15 O -0.391 6.391 16 C -0.077 4.077 17 C -0.117 4.117 18 C -0.224 4.224 19 C -0.009 4.009 20 O -0.167 6.167 21 C 0.118 3.882 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.121 4.121 25 C -0.108 4.108 26 C -0.109 4.109 27 H 0.265 0.735 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.408 0.592 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.209 0.791 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.646 -18.242 -5.883 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.119 3.881 10 N -0.194 5.194 11 C 0.169 3.831 12 S -0.374 6.374 13 N -0.292 5.292 14 C 0.359 3.641 15 O -0.258 6.258 16 C -0.130 4.130 17 C -0.137 4.137 18 C -0.243 4.243 19 C -0.079 4.079 20 O -0.063 6.063 21 C 0.024 3.976 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.139 4.139 25 C -0.126 4.126 26 C -0.129 4.129 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.246 0.754 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.226 0.774 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.589 -17.239 -4.497 21.253 hybrid contribution 1.195 0.409 -1.317 1.825 sum 12.784 -16.830 -5.814 21.920 Atomic orbital electron populations 1.69915 1.05922 1.27295 1.49463 1.24810 0.94876 0.99014 0.94627 0.86449 0.79977 0.82885 0.77891 1.20721 1.20846 1.19774 1.21076 0.93097 0.89654 1.52398 0.92493 1.20176 0.86938 0.79986 1.00995 1.45681 1.42189 1.31778 0.99727 1.22551 0.83849 0.82987 0.93719 1.93124 1.62310 1.68665 1.13330 1.43104 1.37089 1.37404 1.11607 1.16733 0.81399 0.81716 0.84244 1.91428 1.53195 1.50266 1.30862 1.22461 1.02977 1.01956 0.85601 1.21989 0.95838 0.96179 0.99740 1.21859 1.04066 1.03558 0.94836 1.24416 0.93228 0.93966 0.96303 1.84092 1.44199 1.43098 1.34873 1.18088 0.93450 0.97218 0.88846 1.21430 0.95398 0.99637 0.97681 1.21032 0.99984 0.97724 0.93833 1.21194 0.93715 0.99363 0.99637 1.21046 0.95970 0.99742 0.95866 1.21326 1.00080 0.96732 0.94746 0.92484 0.93896 0.89739 0.75371 0.81901 0.82532 0.77409 0.85552 0.85513 0.85772 0.85437 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.40 9.39 -34.44 -0.32 -14.72 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.24 5.93 4.94 -5.19 -0.03 5.90 16 10 N -0.49 -10.17 2.50 -116.63 -0.29 -10.46 16 11 C 0.52 10.94 7.53 -86.91 -0.65 10.29 16 12 S -0.51 -13.05 25.00 -107.50 -2.69 -15.74 16 13 N -0.65 -11.00 5.00 -14.15 -0.07 -11.07 16 14 C 0.58 9.90 7.70 -12.92 -0.10 9.80 16 15 O -0.39 -8.11 13.64 5.20 0.07 -8.04 16 16 C -0.08 -1.02 7.13 -36.82 -0.26 -1.29 16 17 C -0.12 -1.34 10.62 -39.38 -0.42 -1.76 16 18 C -0.22 -1.89 10.87 -39.89 -0.43 -2.32 16 19 C -0.01 -0.07 12.08 29.64 0.36 0.29 16 20 O -0.17 -1.84 10.40 4.97 0.05 -1.79 16 21 C 0.12 1.99 4.34 -83.71 -0.36 1.62 16 22 C -0.12 -1.78 8.55 -39.39 -0.34 -2.12 16 23 C -0.11 -1.22 10.04 -39.61 -0.40 -1.62 16 24 C -0.12 -1.25 10.04 -39.55 -0.40 -1.64 16 25 C -0.11 -1.22 10.04 -39.61 -0.40 -1.62 16 26 C -0.11 -1.57 9.73 -39.39 -0.38 -1.95 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.04 1.10 7.89 -51.93 -0.41 0.69 16 29 H 0.08 2.37 6.47 -51.93 -0.34 2.03 16 30 H 0.41 5.81 6.20 -40.82 -0.25 5.56 16 31 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.21 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 350.29 15.07 5.28 5.28 Total: -1.00 -34.82 350.29 -10.09 -44.92 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.93 Total: 4.40 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -4.23 Total: 0.73 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.37 Total: -46.59 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.12 Total: -9.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -13.05 SS G_CDS: -2.69 Total: -15.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.82 -10.09 -44.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005657708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.189 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds