Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00384 * 2 1 4 4 H 1.48502 * 109.46985 * 269.99997 * 3 2 1 5 5 H 1.48500 * 109.47112 * 29.99632 * 3 2 1 6 6 H 1.48497 * 109.47187 * 150.00155 * 3 2 1 7 7 C 1.37881 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99734 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99674 * 89.99922 * 10 9 7 12 12 S 1.71202 * 120.00205 * 4.90326 * 11 10 9 13 13 N 1.34781 * 119.99912 * 184.89647 * 11 10 9 14 14 C 1.34773 * 120.00140 * 174.71529 * 13 11 10 15 15 O 1.21683 * 119.99721 * 359.97438 * 14 13 11 16 16 C 1.46538 * 120.00218 * 180.02562 * 14 13 11 17 17 C 1.36618 * 125.99632 * 180.02562 * 16 14 13 18 18 C 1.40321 * 106.70746 * 180.02562 * 17 16 14 19 19 C 1.35158 * 107.12448 * 359.97438 * 18 17 16 20 20 O 1.33928 * 108.77402 * 359.97438 * 19 18 17 21 21 C 1.39872 * 120.00391 * 270.00433 * 10 9 7 22 22 C 1.38886 * 120.07303 * 110.87303 * 21 10 9 23 23 C 1.38114 * 119.92684 * 179.81172 * 22 21 10 24 24 C 1.38287 * 120.07066 * 0.45151 * 23 22 21 25 25 C 1.38281 * 120.14234 * 359.78121 * 24 23 22 26 26 C 1.38104 * 120.07648 * 0.02562 * 25 24 23 27 27 H 0.97007 * 119.99296 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46995 * 60.00394 * 9 7 2 29 29 H 1.08997 * 109.47559 * 300.00307 * 9 7 2 30 30 H 0.97006 * 119.99882 * 354.71944 * 13 11 10 31 31 H 1.08005 * 126.64504 * 0.02562 * 17 16 14 32 32 H 1.08005 * 126.44003 * 180.02562 * 18 17 16 33 33 H 1.07999 * 125.61294 * 180.26561 * 19 18 17 34 34 H 1.07996 * 120.03482 * 0.02562 * 22 21 10 35 35 H 1.08003 * 119.96557 * 180.23416 * 23 22 21 36 36 H 1.08003 * 119.92467 * 179.76581 * 24 23 22 37 37 H 1.08005 * 119.96075 * 179.97438 * 25 24 23 38 38 H 1.07993 * 120.03881 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 7 2.2027 -3.6128 0.0015 11 6 2.6415 -4.1244 1.1686 12 16 1.9931 -3.5590 2.6488 13 7 3.5906 -5.0814 1.1705 14 6 4.1058 -5.5173 2.3371 15 8 3.7143 -5.0465 3.3886 16 6 5.1381 -6.5574 2.3391 17 6 5.7416 -7.0874 3.4442 18 6 6.6592 -8.0437 2.9830 19 6 6.5767 -8.0563 1.6340 20 8 5.6585 -7.1601 1.2499 21 6 2.6564 -4.1449 -1.2099 22 6 3.9768 -3.9618 -1.5995 23 6 4.4225 -4.4919 -2.7945 24 6 3.5532 -5.1964 -3.6071 25 6 2.2366 -5.3763 -3.2243 26 6 1.7856 -4.8522 -2.0288 27 1 -0.4849 0.8402 -0.0004 28 1 0.6239 -2.5575 -0.8880 29 1 0.6245 -2.5563 0.8919 30 1 3.9029 -5.4564 0.3321 31 1 5.5498 -6.8219 4.4733 32 1 7.3086 -8.6554 3.5917 33 1 7.1527 -8.6886 0.9746 34 1 4.6552 -3.4085 -0.9671 35 1 5.4502 -4.3531 -3.0962 36 1 3.9033 -5.6066 -4.5428 37 1 1.5601 -5.9266 -3.8615 38 1 0.7572 -4.9928 -1.7307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005657708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = 39.705496 kcal Electronic energy + Delta-G solvation = -25285.636725 eV Core-core repulsion = 21607.873395 eV Total energy + Delta-G solvation = -3677.763330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.74369 -42.15605 -40.62770 -38.54606 -36.34993 -34.74082 -34.07964 -32.02725 -31.54663 -31.23129 -29.49534 -26.71344 -25.09009 -24.39688 -23.63144 -22.76090 -22.38794 -21.81851 -20.26321 -19.38485 -18.75831 -18.04696 -17.58951 -17.56643 -17.03429 -16.77378 -16.59911 -16.02584 -15.94759 -15.84110 -15.11101 -14.68802 -14.45210 -14.26849 -13.98599 -13.80240 -13.71678 -13.60421 -13.57142 -13.00003 -12.76162 -12.68959 -12.35758 -12.27654 -12.18987 -12.08167 -11.82529 -11.08319 -10.75346 -10.65548 -10.02124 -9.94606 -9.72528 -9.00517 -8.26521 -7.81350 -6.38856 -0.48087 0.03268 0.30447 0.33080 0.70155 1.24119 1.33669 1.38433 1.41973 1.47710 1.79865 1.95579 2.05265 2.36653 2.66606 3.06536 3.48973 3.87125 3.91906 3.92465 4.06628 4.13378 4.20638 4.42996 4.46588 4.54638 4.62924 4.81866 4.87241 4.91993 4.98178 5.00831 5.20795 5.33458 5.37921 5.41756 5.47197 5.55935 5.70415 5.78969 5.90084 5.96280 6.17176 6.59222 6.64201 7.27440 8.81713 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.004606 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.532851 B = 6077.479025 C = 7559.887680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.048 0.952 9 C 0.254 3.746 10 N -0.480 5.480 11 C 0.550 3.450 12 S -0.634 6.634 13 N -0.628 5.628 14 C 0.578 3.422 15 O -0.438 6.438 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.231 4.231 19 C 0.024 3.976 20 O -0.173 6.173 21 C 0.069 3.931 22 C -0.132 4.132 23 C -0.097 4.097 24 C -0.099 4.099 25 C -0.099 4.099 26 C -0.122 4.122 27 H 0.269 0.731 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.425 0.575 31 H 0.160 0.840 32 H 0.190 0.810 33 H 0.263 0.737 34 H 0.112 0.888 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.345 -20.920 -9.748 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.571 4.571 8 H 0.066 0.934 9 C 0.134 3.866 10 N -0.180 5.180 11 C 0.194 3.806 12 S -0.499 6.499 13 N -0.275 5.275 14 C 0.362 3.638 15 O -0.307 6.307 16 C -0.168 4.168 17 C -0.128 4.128 18 C -0.250 4.250 19 C -0.045 4.045 20 O -0.069 6.069 21 C -0.023 4.023 22 C -0.152 4.152 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.142 4.142 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.266 0.734 31 H 0.177 0.823 32 H 0.207 0.793 33 H 0.279 0.721 34 H 0.130 0.870 35 H 0.179 0.821 36 H 0.188 0.812 37 H 0.179 0.821 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.337 -19.976 -8.431 26.558 hybrid contribution 0.241 0.964 -0.348 1.053 sum 15.578 -19.012 -8.779 26.100 Atomic orbital electron populations 1.70022 1.07277 1.28274 1.50214 1.25643 0.95729 1.02408 0.94171 0.85471 0.78271 0.78712 0.78717 1.18652 1.20456 1.20247 1.21241 0.92707 0.90892 1.52291 0.93398 1.19598 0.87224 0.80985 0.98766 1.45411 1.40781 1.30435 1.01384 1.21958 0.83668 0.82897 0.92035 1.93282 1.66552 1.72870 1.17212 1.43021 1.35595 1.36014 1.12841 1.17231 0.81391 0.81780 0.83386 1.91398 1.55208 1.52209 1.31859 1.21498 1.04548 1.03585 0.87126 1.22296 0.95394 0.95875 0.99272 1.22248 1.03897 1.03200 0.95643 1.25559 0.90460 0.91435 0.97059 1.84073 1.45041 1.43789 1.33948 1.18427 0.95309 1.00438 0.88086 1.21426 0.94019 1.00542 0.99260 1.21428 1.01864 0.96238 0.91953 1.21745 0.92603 0.96900 1.00419 1.21454 0.97294 0.98564 0.94370 1.21413 0.99422 0.97402 0.95931 0.92216 0.94584 0.93345 0.73364 0.82265 0.79267 0.72126 0.87035 0.82058 0.81211 0.82065 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.29 21.45 0.28 -55.17 16 2 C 0.02 1.20 5.46 84.66 0.46 1.66 16 3 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.53 -30.76 9.39 25.60 0.24 -30.52 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 9 C 0.25 13.67 4.94 85.63 0.42 14.09 16 10 N -0.48 -21.19 2.50 -522.92 -1.31 -22.50 16 11 C 0.55 25.05 7.53 179.05 1.35 26.40 16 12 S -0.63 -35.73 25.00 -56.49 -1.41 -37.14 16 13 N -0.63 -22.56 5.00 -316.89 -1.59 -24.14 16 14 C 0.58 20.99 7.70 86.41 0.67 21.66 16 15 O -0.44 -19.87 13.64 -4.29 -0.06 -19.93 16 16 C -0.12 -3.05 7.13 24.06 0.17 -2.87 16 17 C -0.11 -2.36 10.62 22.40 0.24 -2.12 16 18 C -0.23 -3.00 10.87 22.07 0.24 -2.76 16 19 C 0.02 0.25 12.08 67.11 0.81 1.07 16 20 O -0.17 -3.33 10.40 -5.13 -0.05 -3.39 16 21 C 0.07 2.37 4.34 38.17 0.17 2.53 16 22 C -0.13 -3.74 8.55 22.40 0.19 -3.55 16 23 C -0.10 -1.79 10.04 22.25 0.22 -1.56 16 24 C -0.10 -1.48 10.04 22.29 0.22 -1.26 16 25 C -0.10 -1.84 10.04 22.25 0.22 -1.62 16 26 C -0.12 -3.43 9.73 22.39 0.22 -3.22 16 27 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 28 H 0.04 1.97 7.89 -2.39 -0.02 1.95 16 29 H 0.05 2.98 6.47 -2.39 -0.02 2.97 16 30 H 0.42 12.29 6.20 -92.70 -0.57 11.71 16 31 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.26 -0.23 8.06 -2.91 -0.02 -0.25 16 34 H 0.11 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -86.33 350.29 4.27 -82.06 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.53 Total: 14.41 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 5.84 Total: 17.93 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -2.61 Total: -101.81 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.11 Total: -23.32 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: -35.73 SS G_CDS: -1.41 Total: -37.14 kcal Total: -86.33 4.27 -82.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005657708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.769 kcal (2) G-P(sol) polarization free energy of solvation -86.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds