Wall clock time and date at job start Tue Mar 31 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31595 * 1 3 3 Si 1.86807 * 119.99848 * 2 1 4 4 H 1.48503 * 109.46835 * 269.99749 * 3 2 1 5 5 H 1.48494 * 109.46879 * 29.99773 * 3 2 1 6 6 H 1.48501 * 109.46651 * 149.99912 * 3 2 1 7 7 C 1.38757 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00341 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.76204 * 99.99671 * 180.02562 * 9 7 2 11 11 C 1.39243 * 119.70908 * 179.97438 * 10 9 7 12 12 C 1.38306 * 119.08494 * 179.76506 * 11 10 9 13 13 C 1.38892 * 118.50801 * 0.49701 * 12 11 10 14 14 S 1.76202 * 120.32746 * 179.78042 * 13 12 11 15 15 O 1.42095 * 106.40274 * 156.18232 * 14 13 12 16 16 O 1.42093 * 106.40352 * 23.25748 * 14 13 12 17 17 N 1.65607 * 107.21509 * 269.71581 * 14 13 12 18 18 C 1.47164 * 120.94478 * 269.93681 * 17 14 13 19 19 C 1.53300 * 108.37481 * 230.51658 * 18 17 14 20 20 O 1.42961 * 109.26618 * 307.77372 * 19 18 17 21 21 C 1.42967 * 114.16831 * 62.55217 * 20 19 18 22 22 C 1.47157 * 120.97883 * 90.00129 * 17 14 13 23 23 C 1.38145 * 119.34146 * 359.49925 * 13 12 11 24 24 N 1.31876 * 120.86639 * 0.25575 * 23 13 12 25 25 H 0.96996 * 120.00112 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.45669 * 0.04400 * 11 10 9 27 27 H 1.07999 * 120.74225 * 180.24588 * 12 11 10 28 28 H 1.08996 * 109.64217 * 110.82322 * 18 17 14 29 29 H 1.08999 * 109.72598 * 350.25974 * 18 17 14 30 30 H 1.09002 * 109.51290 * 187.82368 * 19 18 17 31 31 H 1.08997 * 109.51158 * 67.72466 * 19 18 17 32 32 H 1.09005 * 109.50496 * 57.34540 * 21 20 19 33 33 H 1.08995 * 109.51193 * 177.44508 * 21 20 19 34 34 H 1.09004 * 109.67827 * 9.71358 * 22 17 14 35 35 H 1.09000 * 109.68235 * 249.15740 * 22 17 14 36 36 H 1.07999 * 119.56594 * 180.27864 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5475 1.4402 0.7001 7 6 2.0098 -1.2017 0.0005 8 1 3.0897 -1.2017 0.0010 9 16 1.1287 -2.7276 0.0019 10 6 2.4786 -3.8602 0.0029 11 6 2.2298 -5.2302 0.0047 12 6 3.2990 -6.1076 0.0005 13 6 4.5857 -5.5847 0.0053 14 16 5.9826 -6.6587 0.0061 15 8 7.0622 -5.9132 -0.5396 16 8 5.5387 -7.8947 -0.5366 17 7 6.3717 -6.9554 1.5882 18 6 7.3200 -6.0912 2.3091 19 6 8.3768 -6.9816 2.9728 20 8 7.7245 -7.9926 3.7448 21 6 6.9133 -8.8840 2.9759 22 6 5.7807 -8.0914 2.3134 23 6 4.7594 -4.2142 0.0034 24 7 3.7215 -3.4006 0.0023 25 1 -0.4850 0.8400 -0.0004 26 1 1.2161 -5.6026 0.0047 27 1 3.1369 -7.1754 -0.0022 28 1 6.7893 -5.5209 3.0714 29 1 7.8019 -5.4092 1.6087 30 1 9.0064 -6.3755 3.6242 31 1 8.9923 -7.4502 2.2049 32 1 7.5228 -9.3596 2.2074 33 1 6.4908 -9.6471 3.6294 34 1 5.2432 -8.7330 1.6151 35 1 5.0952 -7.7230 3.0766 36 1 5.7584 -3.8037 0.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005689073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:45 Heat of formation + Delta-G solvation = -82.007134 kcal Electronic energy + Delta-G solvation = -23581.154780 eV Core-core repulsion = 19897.724451 eV Total energy + Delta-G solvation = -3683.430329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.40626 -39.24444 -37.21915 -35.78048 -34.98918 -32.94394 -32.07151 -31.63701 -30.85728 -27.28500 -25.99201 -24.47166 -23.66964 -23.14567 -21.68393 -19.11838 -18.43194 -18.03773 -17.38459 -16.71079 -16.47876 -16.13065 -15.61290 -15.52615 -15.24895 -15.14587 -14.51732 -14.40259 -14.08405 -13.62595 -13.53936 -12.89705 -12.76401 -12.65533 -12.31940 -12.23946 -12.01111 -11.78056 -11.58236 -11.41396 -11.30604 -11.18633 -10.96007 -10.72959 -10.48337 -10.27425 -10.11376 -9.46861 -9.19398 -9.12134 -9.07051 -8.74260 -7.13126 -6.70873 -4.41334 0.44192 1.06231 1.79587 2.76011 2.91821 3.05937 3.10585 3.18347 3.56428 3.79119 3.82368 4.08749 4.26947 4.55200 4.58798 4.72217 4.76995 4.82315 4.96606 4.97865 5.07913 5.13318 5.16849 5.30128 5.31554 5.51952 5.57878 5.68296 5.72233 5.84588 6.09584 6.23084 6.30544 6.34340 6.83389 7.02322 7.36167 8.20129 8.39446 8.81842 10.35922 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.003198 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.798574 B = 8752.261939 C = 9209.227615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.114 0.886 9 S 0.154 5.846 10 C 0.132 3.868 11 C -0.207 4.207 12 C 0.034 3.966 13 C -0.793 4.793 14 S 2.704 3.296 15 O -0.963 6.963 16 O -0.966 6.966 17 N -1.004 6.004 18 C 0.082 3.918 19 C 0.051 3.949 20 O -0.380 6.380 21 C 0.051 3.949 22 C 0.083 3.917 23 C 0.224 3.776 24 N -0.497 5.497 25 H 0.278 0.722 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.894 -14.215 5.768 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.136 4.136 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.689 4.689 8 H 0.132 0.868 9 S 0.415 5.585 10 C -0.115 4.115 11 C -0.237 4.237 12 C 0.005 3.995 13 C -0.895 4.895 14 S 2.798 3.202 15 O -0.954 6.954 16 O -0.956 6.956 17 N -0.842 5.842 18 C -0.044 4.044 19 C -0.027 4.027 20 O -0.298 6.298 21 C -0.027 4.027 22 C -0.043 4.043 23 C 0.053 3.947 24 N -0.212 5.212 25 H 0.088 0.912 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.724 -13.399 5.238 17.365 hybrid contribution 0.923 0.779 -0.020 1.208 sum 10.648 -12.620 5.219 17.317 Atomic orbital electron populations 1.69948 1.06326 1.29021 1.44634 1.25257 0.95198 1.00269 0.92871 0.85886 0.79651 0.79632 0.78928 1.19705 1.20483 1.18853 1.23625 0.98022 0.89830 1.57452 0.86814 1.83546 1.02385 0.97467 1.75152 1.24577 0.98020 0.96540 0.92354 1.21574 0.99766 0.92807 1.09592 1.20810 0.90639 0.99330 0.88704 1.30928 1.16161 1.10697 1.31713 1.01390 0.73617 0.73426 0.71726 1.93535 1.52894 1.73326 1.75625 1.93520 1.83099 1.43204 1.75789 1.57935 1.56538 1.38297 1.31461 1.22167 0.91148 0.93204 0.97868 1.22927 0.93753 0.90108 0.95917 1.87949 1.63927 1.43468 1.34438 1.22924 0.92033 0.91822 0.95955 1.22140 0.96472 0.87943 0.97700 1.22360 0.98362 0.87871 0.86095 1.68331 0.98161 1.37540 1.17181 0.91214 0.84748 0.84598 0.90291 0.87681 0.87585 0.92491 0.92515 0.87642 0.87845 0.90371 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.26 13.22 55.49 0.73 -22.53 16 2 C 0.07 1.94 5.49 -17.46 -0.10 1.84 16 3 Si 0.93 20.23 29.55 -169.99 -5.02 15.21 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.54 -14.40 9.25 30.92 0.29 -14.11 16 8 H 0.11 3.06 6.53 -52.49 -0.34 2.72 16 9 S 0.15 3.69 21.64 -107.50 -2.33 1.37 16 10 C 0.13 2.86 6.96 -16.88 -0.12 2.75 16 11 C -0.21 -3.73 9.85 -39.18 -0.39 -4.12 16 12 C 0.03 0.55 9.64 -39.31 -0.38 0.17 16 13 C -0.79 -12.92 5.99 -39.37 -0.24 -13.15 16 14 S 2.70 38.11 5.76 -107.50 -0.62 37.49 16 15 O -0.96 -15.43 15.91 -57.17 -0.91 -16.34 16 16 O -0.97 -15.03 15.97 -57.17 -0.91 -15.94 16 17 N -1.00 -11.23 3.34 -113.04 -0.38 -11.61 16 18 C 0.08 0.80 6.71 -3.52 -0.02 0.77 16 19 C 0.05 0.44 6.98 37.31 0.26 0.70 16 20 O -0.38 -3.79 10.74 -35.23 -0.38 -4.17 16 21 C 0.05 0.42 6.99 37.31 0.26 0.68 16 22 C 0.08 0.77 6.71 -3.53 -0.02 0.75 16 23 C 0.22 4.13 10.68 -17.57 -0.19 3.94 16 24 N -0.50 -10.94 8.44 -12.07 -0.10 -11.04 16 25 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 27 H 0.14 1.75 7.70 -52.49 -0.40 1.35 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 0.99 6.94 -51.93 -0.36 0.63 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.90 6.95 -51.93 -0.36 0.54 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.16 2.46 7.62 -52.49 -0.40 2.06 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -32.34 332.11 -9.52 -41.86 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.96 Total: 0.47 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -0.64 Total: -19.78 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.25 Total: -45.18 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -2.20 Total: -36.45 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 41.81 SS G_CDS: -2.95 Total: 38.86 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.34 -9.52 -41.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005689073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.147 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds