Wall clock time and date at job start Tue Mar 31 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48499 * 109.47249 * 269.99752 * 3 2 1 5 5 H 1.48501 * 109.47096 * 29.99701 * 3 2 1 6 6 H 1.48493 * 109.47303 * 149.99490 * 3 2 1 7 7 C 1.38886 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00226 * 177.32890 * 7 2 1 9 9 N 1.37138 * 119.99925 * 357.34057 * 7 2 1 10 10 C 1.34784 * 120.00129 * 159.52376 * 9 7 2 11 11 O 1.21281 * 119.99907 * 184.71148 * 10 9 7 12 12 C 1.50698 * 119.99839 * 4.70610 * 10 9 7 13 13 S 1.81403 * 109.47041 * 180.02562 * 12 10 9 14 14 C 1.76196 * 102.99941 * 179.97438 * 13 12 10 15 15 C 1.39080 * 119.70664 * 14.29904 * 14 13 12 16 16 C 1.38369 * 119.11069 * 179.97438 * 15 14 13 17 17 C 1.38844 * 118.51885 * 0.02562 * 16 15 14 18 18 C 1.38104 * 119.33650 * 0.02562 * 17 16 15 19 19 N 1.32000 * 120.84397 * 359.97319 * 18 17 16 20 20 O 1.41598 * 119.19812 * 180.02562 * 19 18 17 21 21 C 1.39785 * 120.00069 * 339.51832 * 9 7 2 22 22 C 1.38961 * 120.07680 * 290.75212 * 21 9 7 23 23 C 1.38084 * 119.91856 * 179.79154 * 22 21 9 24 24 C 1.38311 * 120.08053 * 0.45983 * 23 22 21 25 25 C 1.38301 * 120.15456 * 359.79462 * 24 23 22 26 26 C 1.38085 * 120.07904 * 359.97310 * 25 24 23 27 27 H 0.96999 * 120.00137 * 5.02059 * 1 2 3 28 28 H 1.09000 * 109.46788 * 60.00323 * 12 10 9 29 29 H 1.09000 * 109.47079 * 300.00246 * 12 10 9 30 30 H 1.08002 * 120.44609 * 359.97438 * 15 14 13 31 31 H 1.07994 * 120.73783 * 180.29467 * 16 15 14 32 32 H 1.07994 * 120.32891 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.57958 * 179.97438 * 18 17 16 34 34 H 1.07994 * 120.03808 * 359.97438 * 22 21 9 35 35 H 1.08004 * 119.96095 * 180.25409 * 23 22 21 36 36 H 1.08001 * 119.92462 * 179.76626 * 24 23 22 37 37 H 1.08001 * 119.96300 * 179.97438 * 25 24 23 38 38 H 1.08006 * 120.04065 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0086 -1.2028 0.0005 8 1 3.0878 -1.2033 -0.0431 9 7 1.3240 -2.3898 0.0562 10 6 1.9177 -3.5298 -0.3495 11 8 1.2858 -4.5645 -0.3811 12 6 3.3665 -3.5187 -0.7639 13 16 3.8681 -5.1918 -1.2537 14 6 5.5604 -4.9839 -1.6983 15 6 6.2307 -3.8208 -1.3348 16 6 7.5596 -3.6707 -1.6898 17 6 8.1756 -4.6927 -2.3997 18 6 7.4499 -5.8206 -2.7290 19 7 6.1830 -5.9369 -2.3771 20 8 5.4721 -7.1088 -2.7325 21 6 0.0106 -2.4174 0.5337 22 6 -0.2465 -2.1821 1.8789 23 6 -1.5456 -2.2059 2.3463 24 6 -2.5895 -2.4729 1.4792 25 6 -2.3369 -2.7127 0.1408 26 6 -1.0407 -2.6858 -0.3345 27 1 -0.4850 0.8368 -0.0735 28 1 3.9810 -3.1849 0.0723 29 1 3.4984 -2.8391 -1.6058 30 1 5.7208 -3.0451 -0.7827 31 1 8.1067 -2.7805 -1.4170 32 1 9.2115 -4.6060 -2.6921 33 1 7.9250 -6.6177 -3.2814 34 1 0.5686 -1.9779 2.5574 35 1 -1.7465 -2.0190 3.3909 36 1 -3.6043 -2.4946 1.8482 37 1 -3.1544 -2.9213 -0.5335 38 1 -0.8441 -2.8736 -1.3798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007507249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:15 Heat of formation + Delta-G solvation = 77.981858 kcal Electronic energy + Delta-G solvation = -24786.827789 eV Core-core repulsion = 21110.724247 eV Total energy + Delta-G solvation = -3676.103542 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.08290 -39.54122 -37.34994 -34.96962 -34.65685 -32.19597 -31.86148 -30.25660 -29.89191 -29.69327 -28.07529 -25.17108 -24.49899 -24.18077 -21.86533 -21.52692 -19.60755 -18.78065 -17.89299 -17.31068 -16.82414 -16.47597 -15.63374 -15.57598 -15.19377 -15.08064 -14.88820 -14.74608 -14.49362 -13.81906 -13.72044 -13.44613 -12.80740 -12.47037 -12.32200 -12.19143 -12.08785 -11.77442 -11.52097 -11.38718 -11.31649 -11.08192 -10.69095 -10.48745 -10.36633 -10.35104 -9.93901 -9.58631 -9.13104 -8.97171 -8.60795 -8.40934 -7.86312 -7.61145 -7.47529 -6.37995 -4.28733 0.36008 0.52856 1.11378 2.36740 2.43998 2.48977 2.67235 2.92667 2.97795 3.01896 3.06325 3.44072 3.83385 4.26718 4.31857 4.39791 4.43300 4.59886 4.76722 4.95483 5.02045 5.35009 5.41479 5.47979 5.62515 5.70383 5.77385 5.79350 5.87632 6.00601 6.38520 6.54051 6.63428 6.75763 7.00248 7.07307 7.07848 7.29882 7.43837 7.48384 7.69386 7.89057 8.22587 8.74387 9.07248 9.49365 10.42835 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.014409 B = 0.003759 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.791574 B = 7447.308611 C = 9020.640607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.047 3.953 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.360 4.360 8 H 0.101 0.899 9 N -0.402 5.402 10 C 0.483 3.517 11 O -0.571 6.571 12 C -0.151 4.151 13 S 0.096 5.904 14 C 0.064 3.936 15 C -0.146 4.146 16 C -0.059 4.059 17 C -0.146 4.146 18 C 0.090 3.910 19 N -0.116 5.116 20 O -0.537 6.537 21 C 0.246 3.754 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.149 4.149 25 C -0.116 4.116 26 C -0.089 4.089 27 H 0.275 0.725 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.181 0.819 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.081 1.529 -0.129 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.162 4.162 3 Si 0.751 3.249 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.486 4.486 8 H 0.119 0.881 9 N -0.117 5.117 10 C 0.270 3.730 11 O -0.455 6.455 12 C -0.302 4.302 13 S 0.340 5.660 14 C -0.174 4.174 15 C -0.172 4.172 16 C -0.086 4.086 17 C -0.169 4.169 18 C -0.057 4.057 19 N 0.200 4.800 20 O -0.591 6.591 21 C 0.155 3.845 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.168 4.168 25 C -0.135 4.135 26 C -0.108 4.108 27 H 0.087 0.913 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.180 0.820 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.198 0.802 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.533 -0.159 -0.160 10.536 hybrid contribution 1.325 2.359 -0.113 2.708 sum 11.858 2.200 -0.273 12.063 Atomic orbital electron populations 1.69850 1.05605 1.28201 1.43926 1.25347 0.95666 0.99789 0.95412 0.85956 0.79244 0.81130 0.78610 1.20080 1.20499 1.19331 1.19606 0.91976 0.81862 1.55131 0.88131 1.41164 1.10600 1.06576 1.53400 1.18971 0.87033 0.84504 0.82462 1.90671 1.65149 1.31658 1.58062 1.24022 1.00839 0.98965 1.06410 1.87381 0.94432 1.09134 1.75098 1.23847 1.03084 0.91938 0.98529 1.21955 0.95991 0.96887 1.02401 1.21686 0.93877 0.98987 0.94004 1.21708 1.01776 0.92865 1.00600 1.22611 0.84174 1.00137 0.98801 1.42998 1.06624 1.12550 1.17799 1.97644 1.66453 1.11624 1.83424 1.17012 0.83536 0.92945 0.91034 1.20794 0.96178 1.01703 0.94579 1.20635 0.92691 1.01856 0.98400 1.20709 0.97735 1.04386 0.93967 1.20664 0.95776 1.01775 0.95318 1.20770 0.91987 0.99772 0.98294 0.91301 0.87183 0.86354 0.82019 0.82929 0.82199 0.80164 0.87575 0.87676 0.87823 0.87610 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.42 10.13 55.49 0.56 -19.86 16 2 C 0.05 1.06 5.32 -17.49 -0.09 0.97 16 3 Si 0.92 17.54 29.56 -169.99 -5.02 12.51 16 4 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.36 -8.05 9.04 -14.94 -0.14 -8.19 16 8 H 0.10 1.98 6.56 -52.48 -0.34 1.64 16 9 N -0.40 -9.39 2.68 -58.98 -0.16 -9.54 16 10 C 0.48 10.82 7.54 -10.98 -0.08 10.73 16 11 O -0.57 -14.48 15.49 5.56 0.09 -14.40 16 12 C -0.15 -2.60 3.49 36.00 0.13 -2.48 16 13 S 0.10 1.77 20.28 -107.50 -2.18 -0.41 16 14 C 0.06 0.97 6.94 -16.94 -0.12 0.86 16 15 C -0.15 -1.56 9.39 -39.22 -0.37 -1.93 16 16 C -0.06 -0.43 10.17 -39.31 -0.40 -0.83 16 17 C -0.15 -1.01 10.11 -39.41 -0.40 -1.41 16 18 C 0.09 0.99 10.69 -17.53 -0.19 0.80 16 19 N -0.12 -1.92 3.60 -12.10 -0.04 -1.97 16 20 O -0.54 -12.30 19.21 -11.47 -0.22 -12.52 16 21 C 0.25 5.86 2.51 -83.70 -0.21 5.65 16 22 C -0.11 -2.51 9.13 -39.37 -0.36 -2.87 16 23 C -0.12 -2.31 10.04 -39.61 -0.40 -2.71 16 24 C -0.15 -2.85 10.04 -39.53 -0.40 -3.25 16 25 C -0.12 -2.37 10.04 -39.61 -0.40 -2.77 16 26 C -0.09 -2.06 8.82 -39.37 -0.35 -2.41 16 27 H 0.28 6.47 8.32 -40.82 -0.34 6.13 16 28 H 0.11 1.59 6.83 -51.92 -0.35 1.23 16 29 H 0.12 1.86 8.01 -51.92 -0.42 1.45 16 30 H 0.16 1.47 5.96 -52.49 -0.31 1.16 16 31 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.11 2.30 8.06 -52.49 -0.42 1.87 16 35 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 36 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.10 2.48 8.06 -52.48 -0.42 2.05 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -34.87 345.67 -9.48 -44.35 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.95 Total: 6.45 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.77 Total: -9.84 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.36 Total: -31.37 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.13 Total: -26.92 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.51 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.18 Total: -0.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.87 -9.48 -44.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007507249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.334 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds