Wall clock time and date at job start Tue Mar 31 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31658 * 1 3 3 Si 1.86802 * 120.00562 * 2 1 4 4 H 1.48494 * 109.47155 * 270.00222 * 3 2 1 5 5 H 1.48506 * 109.46720 * 30.00264 * 3 2 1 6 6 H 1.48494 * 109.47267 * 149.99909 * 3 2 1 7 7 C 1.38634 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00009 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99727 * 359.97438 * 7 2 1 10 10 C 1.76194 * 99.99869 * 180.02562 * 9 7 2 11 11 N 1.31556 * 126.39217 * 359.97438 * 10 9 7 12 12 N 1.28510 * 110.03740 * 180.02562 * 11 10 9 13 13 C 1.31517 * 109.95189 * 359.97438 * 12 11 10 14 14 C 1.47760 * 126.44409 * 179.97438 * 13 12 11 15 15 C 1.39629 * 120.14071 * 226.94591 * 14 13 12 16 16 C 1.37896 * 119.87585 * 179.72783 * 15 14 13 17 17 C 1.38527 * 120.16156 * 0.02562 * 16 15 14 18 18 Cl 1.73601 * 119.85620 * 179.97438 * 17 16 15 19 19 C 1.38434 * 120.28737 * 0.02562 * 17 16 15 20 20 C 1.38077 * 120.12380 * 359.95281 * 19 17 16 21 21 Cl 1.73592 * 120.08482 * 180.02562 * 20 19 17 22 22 N 1.36772 * 126.39013 * 180.31017 * 10 9 7 23 23 N 1.36598 * 127.16105 * 359.97438 * 22 10 9 24 24 H 0.97002 * 119.99698 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.06300 * 359.71390 * 15 14 13 26 26 H 1.08000 * 119.91847 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.94181 * 180.02562 * 19 17 16 28 28 H 1.00895 * 111.00062 * 275.36458 * 23 22 10 29 29 H 1.00903 * 110.99666 * 39.31114 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2507 1.6177 0.0000 4 1 2.4982 2.0463 -1.4000 5 1 1.4482 2.6526 0.7001 6 1 3.5482 1.4400 0.7000 7 6 2.0097 -1.2006 -0.0005 8 1 3.0897 -1.2007 -0.0001 9 16 1.1286 -2.7265 -0.0005 10 6 2.4782 -3.8592 -0.0005 11 7 3.7569 -3.5497 -0.0010 12 7 4.4688 -4.6196 -0.0014 13 6 3.6883 -5.6781 -0.0006 14 6 4.1239 -7.0900 -0.0013 15 6 3.5420 -8.0029 -0.8831 16 6 3.9567 -9.3180 -0.8829 17 6 4.9483 -9.7350 -0.0101 18 17 5.4639 -11.3927 -0.0161 19 6 5.5291 -8.8358 0.8678 20 6 5.1232 -7.5161 0.8773 21 17 5.8527 -6.3893 1.9780 22 7 2.3920 -5.2241 -0.0065 23 7 1.2536 -5.9790 -0.0131 24 1 -0.4850 0.8401 0.0004 25 1 2.7683 -7.6797 -1.5638 26 1 3.5073 -10.0246 -1.5649 27 1 6.3020 -9.1669 1.5455 28 1 0.9007 -6.1093 0.9231 29 1 0.5513 -5.5689 -0.6103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007653538.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:25 Heat of formation + Delta-G solvation = 104.574644 kcal Electronic energy + Delta-G solvation = -19972.867340 eV Core-core repulsion = 16496.819825 eV Total energy + Delta-G solvation = -3476.047516 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.980 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.18652 -39.43171 -36.90891 -36.34060 -35.93800 -32.78291 -32.28614 -31.16748 -29.22024 -28.77341 -25.82072 -23.68340 -23.23605 -22.07763 -20.80306 -18.75265 -17.82625 -17.11048 -17.06680 -16.10825 -15.92141 -15.29870 -15.03862 -14.59995 -14.42317 -14.03933 -13.97291 -13.17284 -12.56252 -12.43987 -12.12319 -11.69386 -11.32793 -11.23421 -11.21482 -11.19424 -11.04830 -10.89539 -10.71365 -10.28057 -10.04868 -9.95405 -9.35838 -9.28071 -9.09766 -9.03906 -8.57002 -6.94367 -6.59462 -4.35550 0.53675 0.88751 1.65068 2.08426 2.15993 2.22318 2.83945 3.11820 3.17466 3.18425 3.26245 3.48931 3.87332 4.11711 4.48487 4.67994 4.75172 4.85685 4.94007 5.05064 5.15763 5.48631 5.65622 5.74462 5.83715 6.00572 6.15215 6.27417 6.45806 6.65393 7.45903 7.79825 8.25594 8.93123 9.22051 10.48894 Molecular weight = 329.98amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.002980 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.829787 B = 9392.618745 C =10111.696836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.076 3.924 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.108 0.892 9 S 0.134 5.866 10 C 0.145 3.855 11 N -0.292 5.292 12 N -0.246 5.246 13 C 0.189 3.811 14 C 0.026 3.974 15 C -0.060 4.060 16 C -0.109 4.109 17 C -0.021 4.021 18 Cl -0.063 7.063 19 C -0.107 4.107 20 C 0.000 4.000 21 Cl -0.033 7.033 22 N -0.318 5.318 23 N -0.585 5.585 24 H 0.275 0.725 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.360 0.640 29 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -19.506 0.389 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.133 4.133 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.679 4.679 8 H 0.126 0.874 9 S 0.366 5.634 10 C -0.226 4.226 11 N -0.138 5.138 12 N -0.088 5.088 13 C -0.077 4.077 14 C 0.022 3.978 15 C -0.080 4.080 16 C -0.127 4.127 17 C -0.049 4.049 18 Cl -0.034 7.034 19 C -0.126 4.126 20 C -0.029 4.029 21 Cl -0.004 7.004 22 N -0.104 5.104 23 N -0.215 5.215 24 H 0.085 0.915 25 H 0.165 0.835 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.177 0.823 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.445 -19.252 0.191 19.759 hybrid contribution -0.040 1.129 0.491 1.232 sum 4.405 -18.123 0.682 18.664 Atomic orbital electron populations 1.69942 1.06082 1.28676 1.46535 1.25090 0.95241 0.99756 0.93234 0.85879 0.79621 0.79702 0.78844 1.19796 1.20589 1.18893 1.23172 0.97166 0.88528 1.59068 0.87423 1.83342 0.97345 0.96448 1.86227 1.29021 1.03156 0.85965 1.04478 1.74849 0.98718 1.18030 1.22242 1.74539 1.25269 0.93939 1.15067 1.22009 0.79583 0.94534 1.11621 1.17322 0.95814 0.88537 0.96135 1.21201 0.98535 0.91328 0.96935 1.21022 0.96531 0.96301 0.98885 1.20827 0.98700 0.86055 0.99269 1.98380 1.90111 1.16978 1.97947 1.20767 1.01408 0.90443 1.00009 1.20834 0.96597 0.90788 0.94662 1.98428 1.81237 1.60273 1.60436 1.45056 1.03516 1.02863 1.58984 1.59696 1.02205 1.41829 1.17815 0.91477 0.83518 0.83976 0.83584 0.82346 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.63 13.22 55.48 0.73 -22.90 15 2 C 0.08 2.01 5.49 -17.48 -0.10 1.92 15 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 15 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.26 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.53 -14.33 9.37 30.88 0.29 -14.04 15 8 H 0.11 3.02 6.92 -52.49 -0.36 2.66 15 9 S 0.13 3.12 21.70 -107.50 -2.33 0.79 15 10 C 0.14 3.17 8.13 -87.89 -0.71 2.46 15 11 N -0.29 -7.04 11.02 30.77 0.34 -6.70 15 12 N -0.25 -5.33 11.19 32.57 0.36 -4.96 15 13 C 0.19 3.45 6.95 -153.81 -1.07 2.38 15 14 C 0.03 0.37 5.81 -104.93 -0.61 -0.24 15 15 C -0.06 -0.69 9.48 -39.19 -0.37 -1.06 15 16 C -0.11 -1.03 9.81 -39.60 -0.39 -1.42 15 17 C -0.02 -0.21 6.32 -39.40 -0.25 -0.46 15 18 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 15 19 C -0.11 -1.16 9.60 -39.57 -0.38 -1.54 15 20 C 0.00 0.01 6.35 -39.09 -0.25 -0.24 15 21 Cl -0.03 -0.49 27.26 -51.86 -1.41 -1.91 15 22 N -0.32 -5.62 3.82 -10.33 -0.04 -5.66 15 23 N -0.59 -7.46 10.06 60.35 0.61 -6.85 15 24 H 0.28 6.93 8.31 -40.82 -0.34 6.59 15 25 H 0.15 1.58 8.06 -52.48 -0.42 1.15 15 26 H 0.14 1.00 8.06 -52.49 -0.42 0.57 15 27 H 0.15 1.32 8.06 -52.49 -0.42 0.90 15 28 H 0.36 3.95 9.21 -181.37 -1.67 2.28 15 29 H 0.37 4.36 8.99 -181.36 -1.63 2.73 15 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -30.39 313.01 -11.45 -41.84 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.07 Total: 0.19 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.84 Total: -12.24 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 2.01 Total: -47.08 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.33 Total: 0.79 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -2.91 Total: -3.96 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.39 -11.45 -41.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007653538.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.413 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds