Wall clock time and date at job start Tue Mar 31 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29575 * 1 3 3 Si 1.86795 * 120.00215 * 2 1 4 4 H 1.48499 * 109.47265 * 274.99591 * 3 2 1 5 5 H 1.48506 * 109.47059 * 34.99339 * 3 2 1 6 6 H 1.48498 * 109.47336 * 154.99400 * 3 2 1 7 7 C 1.46453 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99849 * 152.23740 * 7 2 1 9 9 C 1.39458 * 120.00192 * 332.24015 * 7 2 1 10 10 C 1.41760 * 120.17150 * 156.90672 * 9 7 2 11 11 C 1.35732 * 119.81276 * 180.02562 * 10 9 7 12 12 C 1.40285 * 120.18155 * 0.02562 * 11 10 9 13 13 N 1.37338 * 119.82405 * 179.97438 * 12 11 10 14 14 C 1.39744 * 120.00197 * 23.72636 * 13 12 11 15 15 N 1.34157 * 125.89929 * 5.67657 * 14 13 12 16 16 C 1.32443 * 109.19238 * 180.27304 * 15 14 13 17 17 S 1.76282 * 141.79469 * 179.81344 * 16 15 14 18 18 C 1.75779 * 90.70335 * 179.97438 * 17 16 15 19 19 C 1.30906 * 109.82767 * 0.03315 * 18 17 16 20 20 N 1.35184 * 109.00132 * 359.77428 * 16 15 14 21 21 C 1.35282 * 125.90335 * 185.56237 * 14 13 12 22 22 N 1.48233 * 126.50628 * 359.97438 * 21 14 13 23 23 O 1.31694 * 120.00123 * 269.68917 * 22 21 14 24 24 O 1.31697 * 119.99662 * 89.41519 * 22 21 14 25 25 C 1.40297 * 120.35452 * 0.22709 * 12 11 10 26 26 C 1.35726 * 120.17423 * 359.48661 * 25 12 11 27 27 H 0.96997 * 120.00106 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.09852 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.90807 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00027 * 203.71918 * 13 12 11 31 31 H 1.07996 * 125.08533 * 179.97438 * 18 17 16 32 32 H 1.07995 * 121.83293 * 180.02562 * 19 18 17 33 33 H 1.07992 * 119.91156 * 179.74777 * 25 12 11 34 34 H 1.08001 * 120.08916 * 180.25218 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2957 0.0000 0.0000 3 14 2.2298 1.6177 0.0000 4 1 2.3717 2.1073 -1.3947 5 1 1.4840 2.6199 0.8029 6 1 3.5761 1.4119 0.5918 7 6 2.0280 -1.2683 0.0006 8 1 3.0148 -1.3224 -0.4351 9 6 1.4511 -2.4063 0.5636 10 6 1.8825 -3.6961 0.1636 11 6 1.3156 -4.7987 0.7160 12 6 0.3051 -4.6646 1.6797 13 7 -0.2638 -5.7853 2.2334 14 6 0.4399 -6.9926 2.2461 15 7 1.7100 -7.1670 1.8508 16 6 2.0406 -8.4410 1.9977 17 16 3.3836 -9.5592 1.7659 18 6 2.4086 -10.8900 2.3728 19 6 1.2155 -10.4565 2.6926 20 7 0.9819 -9.1155 2.4994 21 6 -0.0412 -8.1869 2.6610 22 7 -1.4022 -8.4561 3.1833 23 8 -1.6430 -8.3599 4.4744 24 8 -2.3717 -8.7863 2.3554 25 6 -0.1312 -3.3918 2.0771 26 6 0.4297 -2.2794 1.5384 27 1 -0.4850 0.8400 0.0004 28 1 2.6595 -3.8011 -0.5791 29 1 1.6429 -5.7821 0.4121 30 1 -1.1540 -5.7388 2.6158 31 1 2.7434 -11.9124 2.4667 32 1 0.4570 -11.1158 3.0880 33 1 -0.9125 -3.2969 2.8166 34 1 0.0955 -1.3002 1.8483 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008338227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:43 Heat of formation + Delta-G solvation = 175.961914 kcal Electronic energy + Delta-G solvation = -24286.667194 eV Core-core repulsion = 20511.272043 eV Total energy + Delta-G solvation = -3775.395152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.057 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.09912 -38.83747 -38.44343 -36.92535 -34.92503 -34.49296 -33.29111 -31.51179 -30.13693 -29.46084 -28.60441 -26.26023 -24.86213 -24.10357 -22.27471 -21.36476 -20.68888 -20.24301 -19.18294 -18.38892 -17.60134 -17.45165 -17.03713 -16.54398 -16.42467 -15.69509 -15.34118 -15.06230 -14.57342 -14.14227 -13.79761 -13.55294 -12.89205 -12.73222 -12.22918 -12.02670 -11.75754 -11.71688 -11.58923 -11.43070 -11.26219 -11.14598 -10.96684 -10.80707 -10.73639 -10.53224 -10.38284 -9.88370 -9.40353 -9.29210 -8.47842 -8.25510 -7.63794 -7.20996 -6.83991 -4.24582 -0.50316 0.36252 0.38658 0.70440 1.22355 1.59683 2.12248 2.36521 2.75435 2.93612 2.98105 3.10897 3.22150 3.44190 3.72919 3.95657 4.34385 4.43985 4.73021 4.77784 5.08676 5.49365 5.54187 5.62751 6.11394 6.22749 6.36611 6.53141 6.67679 6.71297 6.84976 7.01597 7.10894 7.35871 7.52496 7.59694 7.94667 8.05263 8.10587 8.21877 8.48749 8.69829 8.96168 9.77172 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.003042 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.009089 B = 9202.388954 C =10488.669783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.081 3.919 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.458 4.458 8 H 0.085 0.915 9 C 0.110 3.890 10 C -0.230 4.230 11 C -0.071 4.071 12 C -0.041 4.041 13 N -0.600 5.600 14 C 0.427 3.573 15 N -0.449 5.449 16 C 0.211 3.789 17 S 0.238 5.762 18 C -0.234 4.234 19 C 0.058 3.942 20 N -0.385 5.385 21 C -0.076 4.076 22 N 0.007 4.993 23 O -0.133 6.133 24 O -0.129 6.129 25 C -0.098 4.098 26 C -0.177 4.177 27 H 0.291 0.709 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.409 0.591 31 H 0.204 0.796 32 H 0.180 0.820 33 H 0.087 0.913 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 -16.279 3.771 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.148 4.148 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.103 0.897 9 C 0.107 3.893 10 C -0.249 4.249 11 C -0.091 4.091 12 C -0.134 4.134 13 N -0.219 5.219 14 C 0.190 3.810 15 N -0.183 5.183 16 C -0.156 4.156 17 S 0.487 5.513 18 C -0.373 4.373 19 C -0.072 4.072 20 N -0.073 5.073 21 C -0.272 4.272 22 N 0.504 4.496 23 O -0.337 6.337 24 O -0.334 6.334 25 C -0.118 4.118 26 C -0.197 4.197 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.245 0.755 31 H 0.221 0.779 32 H 0.197 0.803 33 H 0.106 0.894 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.438 -15.140 2.705 16.673 hybrid contribution -2.607 -0.185 1.193 2.873 sum 3.831 -15.325 3.897 16.270 Atomic orbital electron populations 1.69220 1.09078 1.30904 1.26975 1.27525 0.94304 1.02142 0.90783 0.86295 0.81493 0.79532 0.79491 1.19115 1.19675 1.17661 1.20564 1.02398 0.91797 1.33600 0.89658 1.17570 0.90275 0.91941 0.89482 1.20511 1.06614 0.92086 1.05737 1.20410 0.95791 0.98399 0.94492 1.17029 1.06880 0.83666 1.05827 1.40766 1.16583 1.04359 1.60187 1.16816 0.87985 0.84125 0.92091 1.71159 1.09826 1.10263 1.27004 1.26588 0.93270 0.93588 1.02180 1.85032 1.05499 0.91736 1.69040 1.25048 0.96329 1.05424 1.10467 1.20394 1.00004 0.82341 1.04479 1.42700 1.10244 1.06721 1.47611 1.18674 0.81836 0.89668 1.36990 1.49184 1.01960 0.96548 1.01895 1.96284 1.90849 1.54259 0.92287 1.96292 1.36472 1.47674 1.52972 1.20021 1.00390 0.91255 1.00136 1.20616 1.02254 0.96250 1.00550 0.89697 0.88769 0.86902 0.75496 0.77926 0.80281 0.89442 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.89 11.63 55.98 0.65 -17.24 16 2 C 0.08 1.90 5.05 -15.20 -0.08 1.82 16 3 Si 0.91 17.25 29.71 -169.99 -5.05 12.20 16 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 6 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.46 -11.67 9.21 -35.82 -0.33 -12.00 16 8 H 0.09 2.09 8.04 -52.48 -0.42 1.67 16 9 C 0.11 2.88 5.60 -106.75 -0.60 2.28 16 10 C -0.23 -5.71 9.75 -39.13 -0.38 -6.09 16 11 C -0.07 -1.67 8.75 -39.71 -0.35 -2.02 16 12 C -0.04 -0.94 6.52 -83.86 -0.55 -1.48 16 13 N -0.60 -12.02 5.47 -10.24 -0.06 -12.08 16 14 C 0.43 8.18 7.38 -154.16 -1.14 7.05 16 15 N -0.45 -8.40 8.18 -12.56 -0.10 -8.51 16 16 C 0.21 3.13 8.92 -88.60 -0.79 2.34 16 17 S 0.24 2.16 23.37 -107.50 -2.51 -0.35 16 18 C -0.23 -1.54 11.11 29.04 0.32 -1.21 16 19 C 0.06 0.55 11.26 -16.71 -0.19 0.36 16 20 N -0.39 -5.51 3.19 -60.12 -0.19 -5.71 16 21 C -0.08 -1.31 8.15 -140.63 -1.15 -2.46 16 22 N 0.01 0.13 4.99 33.66 0.17 0.29 16 23 O -0.13 -2.29 19.97 -31.56 -0.63 -2.92 16 24 O -0.13 -2.25 19.97 -31.57 -0.63 -2.88 16 25 C -0.10 -2.28 9.86 -39.71 -0.39 -2.67 16 26 C -0.18 -4.50 8.75 -39.14 -0.34 -4.84 16 27 H 0.29 6.21 8.27 -40.82 -0.34 5.87 16 28 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.11 2.55 5.60 -52.49 -0.29 2.26 16 30 H 0.41 7.45 8.87 -40.82 -0.36 7.09 16 31 H 0.20 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.11 2.77 6.44 -52.49 -0.34 2.43 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -29.72 327.54 -11.61 -41.33 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.24 Total: 9.84 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -5.95 Total: -18.93 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.47 Total: -43.23 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -1.26 Total: -5.80 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.05 Total: 12.20 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.51 Total: -0.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.72 -11.61 -41.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008338227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.294 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds