Wall clock time and date at job start Tue Mar 31 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00230 * 2 1 4 4 N 1.46496 * 109.47170 * 125.00071 * 3 2 1 5 5 C 1.34888 * 120.84959 * 90.02411 * 4 3 2 6 6 N 1.32554 * 125.29555 * 1.51704 * 5 4 3 7 7 C 1.34238 * 119.99678 * 179.97438 * 6 5 4 8 8 O 1.22044 * 120.00578 * 359.97438 * 7 6 5 9 9 C 1.46436 * 120.00013 * 180.02562 * 7 6 5 10 10 H 1.07999 * 119.99728 * 359.97438 * 9 7 6 11 11 C 1.40072 * 120.00227 * 180.02562 * 9 7 6 12 12 N 1.30641 * 120.00161 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99791 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47361 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47264 * 120.00028 * 13 11 9 16 16 H 1.48508 * 109.46860 * 239.99840 * 13 11 9 17 17 S 1.76725 * 109.40738 * 181.77962 * 5 4 3 18 18 C 1.81905 * 95.97710 * 359.86865 * 17 5 4 19 19 H 1.08996 * 109.94974 * 116.84524 * 18 17 5 20 20 C 1.54005 * 109.64346 * 238.06110 * 18 17 5 21 21 S 1.83856 * 102.63511 * 142.50838 * 20 18 17 22 22 O 1.42094 * 109.81124 * 77.03931 * 21 20 18 23 23 O 1.42100 * 109.81047 * 211.35913 * 21 20 18 24 24 C 1.83643 * 94.26940 * 324.28768 * 21 20 18 25 25 C 1.44852 * 120.85742 * 270.00776 * 4 3 2 26 26 H 1.08994 * 107.80650 * 58.69851 * 25 4 3 27 27 H 1.08004 * 119.99766 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00461 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99766 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46869 * 5.00166 * 3 2 1 31 31 H 1.09004 * 109.47126 * 245.00858 * 3 2 1 32 32 H 0.96996 * 119.99917 * 180.02562 * 12 11 9 33 33 H 1.08998 * 110.77864 * 260.80133 * 20 18 17 34 34 H 1.09005 * 110.77720 * 24.03200 * 20 18 17 35 35 H 1.09003 * 110.52486 * 276.14770 * 24 21 20 36 36 H 1.09006 * 110.77719 * 153.02561 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2547 0.8706 1.0012 6 7 4.7832 0.3909 -0.1158 7 6 6.0543 -0.0408 -0.1254 8 8 6.7234 0.0089 0.8941 9 6 6.6384 -0.5702 -1.3594 10 1 6.0465 -0.6137 -2.2617 11 6 7.9646 -1.0211 -1.3693 12 7 8.6805 -0.9689 -0.2778 13 14 8.7098 -1.6957 -2.9438 14 1 7.6991 -1.6466 -4.0306 15 1 9.8876 -0.8755 -3.3250 16 1 9.1351 -3.1020 -2.7271 17 16 5.0899 0.9983 2.5534 18 6 3.6889 1.7177 3.4637 19 1 3.3736 1.0402 4.2571 20 6 4.1018 3.0763 4.0600 21 16 2.5751 4.0819 3.8646 22 8 1.6292 3.7198 4.8612 23 8 2.9192 5.4464 3.6668 24 6 2.1109 3.3158 2.2615 25 6 2.5834 1.8546 2.4184 26 1 1.7278 1.2708 2.7578 27 1 -0.5400 0.9354 0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6212 1.4026 -0.9315 32 1 9.5989 -1.2808 -0.2848 33 1 4.3647 2.9727 5.1127 34 1 4.9287 3.5101 3.4976 35 1 2.6343 3.8034 1.4391 36 1 1.0321 3.3573 2.1111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008554608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:37 Heat of formation + Delta-G solvation = -65.876823 kcal Electronic energy + Delta-G solvation = -23994.609611 eV Core-core repulsion = 20311.878745 eV Total energy + Delta-G solvation = -3682.730866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76193 -39.32607 -38.20458 -37.16258 -36.22649 -35.17487 -34.46123 -32.90371 -30.83763 -28.92325 -28.30364 -26.09102 -24.39829 -22.32153 -21.26703 -20.31659 -19.96222 -19.41338 -18.24223 -17.89324 -17.47177 -17.08913 -16.85794 -16.76914 -16.48907 -16.18615 -15.77395 -15.31442 -15.16927 -14.88624 -14.49211 -14.21402 -13.99236 -13.42152 -13.32397 -13.20814 -13.09680 -13.07203 -12.89895 -12.84084 -12.73122 -12.50136 -12.18768 -12.06201 -11.99540 -11.64343 -11.30236 -11.00517 -10.51018 -10.33042 -9.57048 -9.34911 -9.10483 -8.40713 -6.92810 -1.05659 0.33600 0.49876 1.02875 1.27970 1.36109 1.39453 1.42339 1.54847 1.97707 2.22318 2.43756 2.56220 2.83723 2.86848 3.36067 3.40265 3.71799 3.79607 3.91843 4.03921 4.09055 4.18520 4.41526 4.48591 4.55858 4.65186 4.77822 4.82428 5.07040 5.21331 5.44747 5.72411 5.82761 5.89690 6.02183 6.60468 6.74473 6.85800 8.33626 8.53892 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.003935 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.748272 B = 7114.557229 C = 8225.419442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.190 4.190 3 C 0.151 3.849 4 N -0.568 5.568 5 C 0.425 3.575 6 N -0.615 5.615 7 C 0.477 3.523 8 O -0.592 6.592 9 C -0.521 4.521 10 H 0.079 0.921 11 C 0.024 3.976 12 N -0.802 5.802 13 Si 1.001 2.999 14 H -0.252 1.252 15 H -0.262 1.262 16 H -0.263 1.263 17 S -0.082 6.082 18 C -0.134 4.134 19 H 0.163 0.837 20 C -0.555 4.555 21 S 2.424 3.576 22 O -0.943 6.943 23 O -0.964 6.964 24 C -0.586 4.586 25 C 0.146 3.854 26 H 0.141 0.859 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.280 0.720 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 7.378 5.682 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.209 4.209 3 C 0.027 3.973 4 N -0.286 5.286 5 C 0.046 3.954 6 N -0.366 5.366 7 C 0.284 3.716 8 O -0.482 6.482 9 C -0.556 4.556 10 H 0.097 0.903 11 C -0.192 4.192 12 N -0.432 5.432 13 Si 0.820 3.180 14 H -0.175 1.175 15 H -0.187 1.187 16 H -0.187 1.187 17 S 0.148 5.852 18 C -0.264 4.264 19 H 0.181 0.819 20 C -0.685 4.685 21 S 2.607 3.393 22 O -0.940 6.940 23 O -0.961 6.961 24 C -0.717 4.717 25 C 0.040 3.960 26 H 0.158 0.842 27 H 0.145 0.855 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.189 0.811 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.531 7.696 6.495 19.357 hybrid contribution 0.548 -0.993 -1.085 1.570 sum -15.983 6.703 5.410 18.156 Atomic orbital electron populations 1.24073 0.94315 1.03655 0.97048 1.23109 0.96827 0.98025 1.02986 1.20835 0.91409 0.96938 0.88092 1.46463 1.07504 1.62050 1.12586 1.24907 0.88351 0.88979 0.93184 1.69091 1.18024 1.27606 1.21929 1.19563 0.82186 0.79789 0.90088 1.90496 1.63262 1.58988 1.35413 1.21328 0.97792 1.40529 0.95950 0.90308 1.27084 0.96780 0.93723 1.01625 1.70133 1.08839 1.33923 1.30259 0.84918 0.78403 0.78330 0.76361 1.17489 1.18652 1.18708 1.88889 1.16039 1.75958 1.04350 1.24557 0.98313 1.01633 1.01886 0.81910 1.30638 1.20179 1.05385 1.12284 1.08262 0.77756 0.75279 0.77990 1.93619 1.59174 1.85075 1.56142 1.93598 1.83848 1.32308 1.86302 1.31045 1.14598 1.03847 1.22241 1.21312 0.97845 0.94942 0.81878 0.84162 0.85471 0.87608 0.90501 0.85456 0.90492 0.90992 0.81064 0.83877 0.83000 0.79389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 14.32 67.78 0.97 -1.32 16 2 C -0.19 -4.30 9.85 25.65 0.25 -4.04 16 3 C 0.15 3.45 5.88 85.63 0.50 3.95 16 4 N -0.57 -15.60 2.55 -688.13 -1.76 -17.36 16 5 C 0.43 17.53 7.86 179.70 1.41 18.94 16 6 N -0.62 -31.78 9.74 -314.48 -3.06 -34.85 16 7 C 0.48 29.41 7.67 86.46 0.66 30.07 16 8 O -0.59 -38.83 12.32 -5.46 -0.07 -38.90 16 9 C -0.52 -31.58 9.64 24.85 0.24 -31.34 16 10 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 11 C 0.02 1.38 5.50 85.32 0.47 1.85 16 12 N -0.80 -48.84 11.83 21.84 0.26 -48.58 16 13 Si 1.00 41.76 29.56 68.60 2.03 43.78 16 14 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 15 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 16 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 17 S -0.08 -3.18 19.30 -56.49 -1.09 -4.27 16 18 C -0.13 -2.81 3.65 30.85 0.11 -2.70 16 19 H 0.16 2.55 8.14 -2.39 -0.02 2.53 16 20 C -0.55 -8.99 6.94 72.32 0.50 -8.49 16 21 S 2.42 35.26 6.07 -56.49 -0.34 34.92 16 22 O -0.94 -17.66 18.16 -127.53 -2.32 -19.97 16 23 O -0.96 -21.62 18.17 -127.53 -2.32 -23.94 16 24 C -0.59 -6.53 5.94 72.45 0.43 -6.10 16 25 C 0.15 2.63 3.22 45.68 0.15 2.77 16 26 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.13 1.13 7.84 -2.91 -0.02 1.11 16 28 H 0.11 1.45 8.06 -2.91 -0.02 1.43 16 29 H 0.08 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.13 1.64 6.89 -2.38 -0.02 1.62 16 31 H 0.08 2.24 7.62 -2.38 -0.02 2.22 16 32 H 0.28 15.24 8.29 -92.71 -0.77 14.47 16 33 H 0.17 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.14 2.67 7.80 -2.38 -0.02 2.66 16 35 H 0.15 1.79 8.09 -2.39 -0.02 1.77 16 36 H 0.19 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -93.56 332.53 -1.86 -95.42 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.11 Total: 10.15 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.70 Total: 3.60 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.56 Total: -100.79 kcal Atomic # 8 Polarization: -78.10 SS G_CDS: -4.70 Total: -82.80 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 32.08 SS G_CDS: -1.43 Total: 30.65 kcal Total: -93.56 -1.86 -95.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008554608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.539 kcal (2) G-P(sol) polarization free energy of solvation -93.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds