Wall clock time and date at job start Tue Mar 31 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46497 * 109.47480 * 235.00061 * 3 2 1 5 5 C 1.38509 * 123.06697 * 90.02271 * 4 3 2 6 6 N 1.32547 * 126.09244 * 4.37938 * 5 4 3 7 7 C 1.34238 * 120.00057 * 179.97438 * 6 5 4 8 8 O 1.22037 * 120.00099 * 0.02562 * 7 6 5 9 9 C 1.46439 * 120.00012 * 180.02562 * 7 6 5 10 10 H 1.07997 * 120.00111 * 0.02562 * 9 7 6 11 11 C 1.40079 * 119.99874 * 180.02562 * 9 7 6 12 12 N 1.30649 * 120.00143 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99764 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47138 * 90.00194 * 13 11 9 15 15 H 1.48500 * 109.47035 * 209.99845 * 13 11 9 16 16 H 1.48496 * 109.47342 * 329.99891 * 13 11 9 17 17 S 1.78635 * 107.81788 * 184.37911 * 5 4 3 18 18 C 1.82385 * 93.04050 * 20.59431 * 17 5 4 19 19 H 1.08998 * 112.79162 * 83.88242 * 18 17 5 20 20 C 1.52905 * 114.11052 * 214.01548 * 18 17 5 21 21 S 1.85365 * 103.87967 * 137.32527 * 20 18 17 22 22 O 1.42098 * 109.99277 * 241.08646 * 21 20 18 23 23 O 1.42100 * 108.71492 * 107.86074 * 21 20 18 24 24 C 1.84570 * 96.93357 * 354.65683 * 21 20 18 25 25 C 1.40952 * 123.07263 * 269.73331 * 4 3 2 26 26 H 1.08996 * 103.35555 * 252.88385 * 25 4 3 27 27 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 29 29 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46685 * 354.99989 * 3 2 1 31 31 H 1.09000 * 109.47319 * 114.99879 * 3 2 1 32 32 H 0.96993 * 119.99631 * 179.97438 * 12 11 9 33 33 H 1.09002 * 110.46601 * 256.80903 * 20 18 17 34 34 H 1.08996 * 110.47282 * 19.40807 * 20 18 17 35 35 H 1.09003 * 111.17461 * 218.68422 * 24 21 20 36 36 H 1.09002 * 111.17772 * 94.38855 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 -1.1314 5 6 2.6504 1.8217 -2.3807 6 7 1.5002 2.3948 -2.7056 7 6 1.2967 2.8277 -3.9598 8 8 2.1704 2.6931 -4.8011 9 6 0.0262 3.4614 -4.3186 10 1 -0.7469 3.5809 -3.5740 11 6 -0.1863 3.9126 -5.6276 12 7 0.7491 3.7686 -6.5282 13 14 -1.8072 4.7203 -6.0854 14 1 -1.7112 6.1851 -5.8609 15 1 -2.1046 4.4573 -7.5163 16 1 -2.8945 4.1607 -5.2429 17 16 4.0337 1.5432 -3.4761 18 6 4.7364 0.2373 -2.4145 19 1 4.2882 -0.7398 -2.5943 20 6 6.2648 0.1906 -2.4105 21 16 6.6971 -0.0666 -0.6264 22 8 7.4729 1.0254 -0.1521 23 8 7.1664 -1.3973 -0.4582 24 6 4.9811 0.0662 0.0401 25 6 4.3218 0.8672 -1.0465 26 1 4.9106 1.7844 -1.0571 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0045 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 -0.0896 31 1 2.6213 1.4026 0.9314 32 1 0.6017 4.0807 -7.4347 33 1 6.6225 -0.6333 -3.0279 34 1 6.6760 1.1373 -2.7608 35 1 4.9676 0.6033 0.9886 36 1 4.5202 -0.9165 0.1397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008554610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:41 Heat of formation + Delta-G solvation = -18.818044 kcal Electronic energy + Delta-G solvation = -23942.443509 eV Core-core repulsion = 20261.753265 eV Total energy + Delta-G solvation = -3680.690244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.66890 -37.50028 -37.36377 -36.36022 -35.33373 -33.59374 -32.73921 -31.54228 -30.15722 -27.50310 -26.80920 -24.20787 -23.20649 -20.89746 -20.11991 -19.41392 -18.95938 -17.92830 -17.38514 -16.73790 -16.13895 -15.91389 -15.74662 -15.33596 -15.06490 -14.98344 -14.55940 -14.28007 -13.82788 -13.63526 -13.21837 -12.91192 -12.65181 -12.54143 -12.41617 -12.35039 -12.09924 -11.76738 -11.45651 -11.37563 -11.25638 -11.18047 -10.90295 -10.72680 -10.47836 -10.44688 -9.96538 -9.44949 -9.03384 -8.79853 -7.96598 -7.75917 -7.28368 -6.42574 -4.83706 -0.42147 1.63420 1.92921 2.10300 2.28282 2.46711 3.05434 3.06589 3.11738 3.16621 3.22959 3.66299 3.81170 3.97653 4.07212 4.23817 4.50518 4.51417 4.63692 4.93024 5.02523 5.15299 5.17423 5.28610 5.34888 5.49223 5.70269 5.74061 5.85928 5.98476 6.62528 6.74510 6.88647 7.21207 7.26444 8.02814 8.38590 8.74636 8.75487 10.28015 10.47884 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.019314 B = 0.003771 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.360203 B = 7423.119700 C = 8514.149985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.162 3.838 4 N -0.576 5.576 5 C 0.417 3.583 6 N -0.548 5.548 7 C 0.483 3.517 8 O -0.548 6.548 9 C -0.472 4.472 10 H 0.079 0.921 11 C 0.073 3.927 12 N -0.745 5.745 13 Si 0.917 3.083 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.261 1.261 17 S -0.029 6.029 18 C -0.156 4.156 19 H 0.127 0.873 20 C -0.535 4.535 21 S 2.376 3.624 22 O -0.922 6.922 23 O -0.928 6.928 24 C -0.561 4.561 25 C 0.139 3.861 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.274 0.726 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 -8.059 12.514 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.204 4.204 3 C 0.037 3.963 4 N -0.297 5.297 5 C 0.037 3.963 6 N -0.292 5.292 7 C 0.290 3.710 8 O -0.435 6.435 9 C -0.507 4.507 10 H 0.098 0.902 11 C -0.149 4.149 12 N -0.374 5.374 13 Si 0.741 3.259 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.185 1.185 17 S 0.199 5.801 18 C -0.287 4.287 19 H 0.145 0.855 20 C -0.666 4.666 21 S 2.557 3.443 22 O -0.919 6.919 23 O -0.925 6.925 24 C -0.690 4.690 25 C 0.029 3.971 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.427 -7.469 11.572 15.648 hybrid contribution -1.628 -0.233 0.070 1.646 sum 5.799 -7.702 11.643 15.116 Atomic orbital electron populations 1.23904 0.95863 1.02159 0.97931 1.23266 0.96468 0.98533 1.02160 1.20540 0.91919 0.96576 0.87230 1.45207 1.10486 1.64922 1.09128 1.25459 0.92938 0.92323 0.85546 1.69075 1.13787 1.19985 1.26353 1.19199 0.90072 0.81332 0.80364 1.90586 1.45109 1.57190 1.50616 1.20943 0.99241 1.35038 0.95486 0.90239 1.25943 0.98158 0.94779 0.95993 1.70002 1.31967 1.32496 1.02974 0.86192 0.81621 0.79818 0.78256 1.19404 1.20160 1.18520 1.88883 1.23050 1.41477 1.26733 1.25367 0.95968 1.06966 1.00389 0.85499 1.30258 1.00793 1.13208 1.22342 1.10102 0.78132 0.75634 0.80463 1.93658 1.65456 1.54450 1.78318 1.93621 1.78022 1.36102 1.84747 1.30053 1.22122 1.09524 1.07307 1.19810 0.86935 0.98069 0.92304 0.92553 0.87861 0.88645 0.87846 0.88350 0.90107 0.91489 0.83225 0.83560 0.83452 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 14.32 29.02 0.42 -1.51 16 2 C -0.18 -2.21 9.85 -36.02 -0.35 -2.56 16 3 C 0.16 2.05 6.14 -5.19 -0.03 2.02 16 4 N -0.58 -8.72 2.81 -170.05 -0.48 -9.20 16 5 C 0.42 8.58 7.96 -85.39 -0.68 7.90 16 6 N -0.55 -13.47 10.10 -11.97 -0.12 -13.59 16 7 C 0.48 13.91 7.67 -13.20 -0.10 13.81 16 8 O -0.55 -16.84 12.42 4.88 0.06 -16.78 16 9 C -0.47 -13.37 9.64 -35.59 -0.34 -13.72 16 10 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 11 C 0.07 1.97 5.50 -17.36 -0.10 1.88 16 12 N -0.75 -21.40 11.83 55.55 0.66 -20.74 16 13 Si 0.92 19.51 29.56 -169.99 -5.02 14.48 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 S -0.03 -0.55 19.43 -107.50 -2.09 -2.64 16 18 C -0.16 -1.92 3.92 -25.06 -0.10 -2.02 16 19 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 20 C -0.54 -4.80 6.88 37.11 0.26 -4.55 16 21 S 2.38 20.83 5.99 -107.50 -0.64 20.19 16 22 O -0.92 -11.10 18.17 -57.71 -1.05 -12.15 16 23 O -0.93 -10.56 18.14 -57.71 -1.05 -11.60 16 24 C -0.56 -4.20 6.92 35.78 0.25 -3.96 16 25 C 0.14 1.64 2.63 -70.46 -0.19 1.45 16 26 H 0.06 0.67 7.05 -51.93 -0.37 0.30 16 27 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 28 H 0.10 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.10 1.41 7.52 -51.93 -0.39 1.02 16 31 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 32 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 33 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.15 1.29 7.94 -51.93 -0.41 0.88 16 35 H 0.15 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -38.53 334.35 -9.74 -48.27 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.08 Total: -0.02 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.97 Total: -1.25 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.06 Total: -43.53 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -2.03 Total: -40.54 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: 20.28 SS G_CDS: -2.73 Total: 17.55 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -38.53 -9.74 -48.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008554610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.454 kcal (2) G-P(sol) polarization free energy of solvation -38.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds