Wall clock time and date at job start Tue Mar 31 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99817 * 2 1 4 4 C 1.53006 * 109.47006 * 66.04904 * 3 2 1 5 5 C 1.50701 * 109.47123 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00153 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99844 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00074 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00084 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47179 * 89.99957 * 9 7 5 11 11 H 1.48495 * 109.47205 * 209.99876 * 9 7 5 12 12 H 1.48500 * 109.47144 * 329.99877 * 9 7 5 13 13 C 1.46892 * 110.99769 * 236.05323 * 2 1 3 14 14 C 1.50703 * 109.47136 * 293.94868 * 13 2 1 15 15 O 1.21290 * 120.00018 * 0.02562 * 14 13 2 16 16 N 1.34773 * 120.00322 * 179.97438 * 14 13 2 17 17 C 1.39974 * 120.00286 * 184.62435 * 16 14 13 18 18 C 1.38884 * 120.04723 * 324.89215 * 17 16 14 19 19 C 1.38102 * 119.96361 * 180.02562 * 18 17 16 20 20 C 1.38377 * 120.07454 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 119.95074 * 180.27304 * 20 19 18 22 22 C 1.38477 * 120.09971 * 359.97438 * 20 19 18 23 23 Cl 1.73600 * 119.98703 * 180.02562 * 22 20 19 24 24 C 1.38242 * 120.03292 * 0.02562 * 22 20 19 25 25 H 1.08998 * 109.46971 * 183.95526 * 1 2 3 26 26 H 1.09001 * 109.46791 * 303.94732 * 1 2 3 27 27 H 1.08998 * 109.47221 * 63.94502 * 1 2 3 28 28 H 1.09001 * 109.47199 * 186.04453 * 3 2 1 29 29 H 1.09000 * 109.47325 * 306.05174 * 3 2 1 30 30 H 1.08999 * 109.47245 * 300.00407 * 4 3 2 31 31 H 1.09000 * 109.46859 * 59.99984 * 4 3 2 32 32 H 0.96993 * 120.00056 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47251 * 173.95233 * 13 2 1 34 34 H 1.08999 * 109.47593 * 53.95107 * 13 2 1 35 35 H 0.96997 * 119.99973 * 4.62763 * 16 14 13 36 36 H 1.08001 * 120.01975 * 0.04404 * 18 17 16 37 37 H 1.08006 * 119.96553 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.03596 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1720 3.4642 1.3186 6 1 2.7200 3.8323 0.4639 7 6 1.9661 4.2816 2.4097 8 7 2.4374 5.5094 2.4098 9 14 1.0178 3.6451 3.8879 10 1 1.9608 3.0179 4.8485 11 1 0.3157 4.7742 4.5492 12 1 0.0230 2.6371 3.4411 13 6 1.9954 -0.7658 -1.1376 14 6 1.6370 -2.2203 -0.9730 15 8 1.0048 -2.5831 -0.0036 16 7 2.0180 -3.1178 -1.9035 17 6 1.6034 -4.4508 -1.8013 18 6 1.4719 -5.0444 -0.5526 19 6 1.0632 -6.3599 -0.4538 20 6 0.7851 -7.0874 -1.5976 21 17 0.2648 -8.7386 -1.4694 22 6 0.9152 -6.4983 -2.8441 23 17 0.5649 -7.4135 -4.2770 24 6 1.3240 -5.1818 -2.9479 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5739 0.8525 27 1 -0.3633 0.4514 -0.9232 28 1 3.0797 1.3445 -0.1082 29 1 1.5610 1.9274 -0.8308 30 1 0.5472 2.0844 1.4267 31 1 2.0659 1.5015 2.1492 32 1 2.2929 6.0843 3.1775 33 1 3.0796 -0.6609 -1.1757 34 1 1.5611 -0.3870 -2.0628 35 1 2.5795 -2.8400 -2.6439 36 1 1.6888 -4.4775 0.3407 37 1 0.9605 -6.8214 0.5173 38 1 1.4259 -4.7225 -3.9201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009112402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:23 Heat of formation + Delta-G solvation = -11.482446 kcal Electronic energy + Delta-G solvation = -22421.076416 eV Core-core repulsion = 18736.616854 eV Total energy + Delta-G solvation = -3684.459562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97683 -39.22762 -37.24423 -36.91262 -36.60477 -34.92116 -33.02795 -31.38400 -30.85046 -29.89202 -27.77569 -25.95257 -23.74659 -23.47785 -22.27801 -20.62529 -19.96518 -18.45209 -17.41503 -17.15793 -16.81412 -16.24904 -15.58667 -15.29675 -14.92171 -14.62381 -14.44441 -14.34962 -14.19479 -13.79704 -13.08797 -12.97265 -12.84825 -12.52700 -12.50919 -12.27266 -12.02925 -11.73858 -11.46845 -11.39237 -11.31165 -11.24315 -10.95604 -10.49707 -10.28398 -10.01617 -9.76915 -9.67095 -9.35614 -9.23192 -8.55576 -8.54574 -7.99224 -6.06605 -4.05163 0.49962 0.63613 1.42722 1.78125 2.30573 2.61063 3.08185 3.32911 3.39953 3.45413 4.15752 4.24662 4.45175 4.45260 4.61477 4.68413 4.89045 5.11542 5.14998 5.23017 5.25406 5.28162 5.60823 5.65276 5.74373 5.79631 5.86462 6.07546 6.22221 6.33010 6.41612 6.67588 6.88658 7.08875 7.21037 7.46693 7.52764 7.79587 7.87150 8.49266 8.96547 9.55911 11.06485 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.030945 B = 0.002015 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.600667 B =13895.674139 C =14516.648747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.071 3.929 4 C -0.007 4.007 5 C -0.522 4.522 6 H 0.071 0.929 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.881 3.119 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.038 3.962 14 C 0.516 3.484 15 O -0.493 6.493 16 N -0.680 5.680 17 C 0.173 3.827 18 C -0.106 4.106 19 C -0.078 4.078 20 C -0.051 4.051 21 Cl -0.053 7.053 22 C -0.012 4.012 23 Cl -0.048 7.048 24 C -0.132 4.132 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.018 0.982 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.414 0.586 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 -27.189 -13.700 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.055 4.055 4 C -0.045 4.045 5 C -0.561 4.561 6 H 0.089 0.911 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.189 1.189 13 C -0.094 4.094 14 C 0.304 3.696 15 O -0.364 6.364 16 N -0.326 5.326 17 C 0.077 3.923 18 C -0.126 4.126 19 C -0.097 4.097 20 C -0.079 4.079 21 Cl -0.024 7.024 22 C -0.040 4.040 23 Cl -0.019 7.019 24 C -0.153 4.153 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.035 0.965 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.251 0.749 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.186 -27.624 -12.549 30.419 hybrid contribution -0.497 0.163 -0.520 0.737 sum -2.683 -27.461 -13.069 30.530 Atomic orbital electron populations 1.22573 0.87085 1.02677 1.00690 1.61840 1.08592 1.15793 1.39084 1.22213 0.99098 0.84212 0.99985 1.19577 0.96774 0.95547 0.92614 1.21050 1.35680 0.95487 1.03862 0.91112 1.24993 0.95270 0.94677 0.98432 1.69910 1.46209 1.07172 1.30915 0.86751 0.80823 0.78555 0.83013 1.20195 1.21497 1.18907 1.21966 1.02651 0.89476 0.95273 1.21158 0.78430 0.88282 0.81713 1.90686 1.37199 1.79999 1.28535 1.43688 1.52663 1.06465 1.29830 1.17641 0.97106 0.84305 0.93258 1.21489 0.99230 0.93740 0.98167 1.20998 0.97786 0.93473 0.97449 1.20752 1.06027 0.87876 0.93247 1.98387 1.88905 1.16787 1.98345 1.20402 1.03721 0.92750 0.87137 1.98396 1.93239 1.73476 1.36812 1.20707 1.03074 0.92524 0.98991 0.90602 0.90447 0.96462 0.91294 0.95210 0.96408 0.95997 0.92700 0.87417 0.91743 0.74920 0.82462 0.83574 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.01 60.07 0.54 0.83 16 2 N -0.53 -8.69 4.50 -244.37 -1.10 -9.79 16 3 C 0.07 1.35 4.90 -3.82 -0.02 1.33 16 4 C -0.01 -0.17 3.97 -27.88 -0.11 -0.29 16 5 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 6 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 9 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.04 0.44 5.45 -4.98 -0.03 0.41 16 14 C 0.52 5.90 7.40 -10.99 -0.08 5.82 16 15 O -0.49 -7.37 11.75 5.55 0.07 -7.31 16 16 N -0.68 -5.42 5.34 -9.86 -0.05 -5.47 16 17 C 0.17 1.54 6.30 -83.68 -0.53 1.02 16 18 C -0.11 -1.05 8.70 -39.39 -0.34 -1.39 16 19 C -0.08 -0.68 9.82 -39.58 -0.39 -1.07 16 20 C -0.05 -0.46 6.32 -39.44 -0.25 -0.71 16 21 Cl -0.05 -0.46 27.95 -51.86 -1.45 -1.91 16 22 C -0.01 -0.10 6.32 -39.49 -0.25 -0.35 16 23 Cl -0.05 -0.40 27.95 -51.86 -1.45 -1.85 16 24 C -0.13 -1.02 9.75 -39.36 -0.38 -1.41 16 25 H 0.08 1.20 5.88 -51.93 -0.31 0.90 16 26 H 0.08 1.38 6.30 -51.93 -0.33 1.05 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 29 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.02 0.42 5.53 -51.93 -0.29 0.14 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.11 1.04 7.93 -51.93 -0.41 0.63 16 34 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.41 1.86 8.82 -40.82 -0.36 1.50 16 36 H 0.16 1.78 6.22 -52.49 -0.33 1.45 16 37 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 345.72 15.07 5.21 5.21 Total: -1.00 -32.54 345.72 -9.46 -42.00 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.52 Total: -2.33 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.27 Total: -8.91 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: -0.38 Total: -42.09 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.07 Total: -7.31 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -2.90 Total: -3.76 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.54 -9.46 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009112402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.521 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds