Wall clock time and date at job start Tue Mar 31 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99729 * 2 1 4 4 N 1.46496 * 109.47106 * 124.99600 * 3 2 1 5 5 C 1.34890 * 120.85490 * 90.02281 * 4 3 2 6 6 N 1.32548 * 125.29414 * 358.44388 * 5 4 3 7 7 C 1.34245 * 120.00128 * 180.02562 * 6 5 4 8 8 O 1.22038 * 119.99641 * 359.97438 * 7 6 5 9 9 C 1.46439 * 119.99852 * 179.97438 * 7 6 5 10 10 H 1.07998 * 120.00281 * 359.97438 * 9 7 6 11 11 C 1.40077 * 119.99634 * 179.97438 * 9 7 6 12 12 N 1.30646 * 120.00123 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 119.99904 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46945 * 90.00529 * 13 11 9 15 15 H 1.48494 * 109.47146 * 210.00250 * 13 11 9 16 16 H 1.48498 * 109.47473 * 330.00544 * 13 11 9 17 17 S 1.76725 * 109.41067 * 178.41793 * 5 4 3 18 18 C 1.81913 * 95.97533 * 359.83017 * 17 5 4 19 19 H 1.08994 * 110.12779 * 243.46957 * 18 17 5 20 20 C 1.54003 * 109.55799 * 122.18716 * 18 17 5 21 21 S 1.83857 * 102.63454 * 217.55823 * 20 18 17 22 22 O 1.42092 * 109.81136 * 148.60361 * 21 20 18 23 23 O 1.42097 * 109.81088 * 282.95681 * 21 20 18 24 24 C 1.83749 * 94.23058 * 35.78124 * 21 20 18 25 25 C 1.44854 * 120.85376 * 269.74174 * 4 3 2 26 26 H 1.08991 * 107.80646 * 301.33270 * 25 4 3 27 27 H 1.07997 * 120.00202 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99479 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00202 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46953 * 244.99339 * 3 2 1 31 31 H 1.09000 * 109.47318 * 4.98937 * 3 2 1 32 32 H 0.96997 * 119.99948 * 180.02562 * 12 11 9 33 33 H 1.09001 * 110.77640 * 335.84386 * 20 18 17 34 34 H 1.09000 * 110.77514 * 99.08317 * 20 18 17 35 35 H 1.08996 * 110.67781 * 83.77398 * 24 21 20 36 36 H 1.08999 * 110.67504 * 206.76007 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 4.2546 0.8709 1.0015 6 7 4.7656 0.3383 -0.0995 7 6 6.0384 -0.0882 -0.1105 8 8 6.7252 0.0150 0.8930 9 6 6.6028 -0.6771 -1.3267 10 1 5.9949 -0.7687 -2.2146 11 6 7.9311 -1.1216 -1.3383 12 7 8.6663 -1.0112 -0.2640 13 14 8.6508 -1.8735 -2.8894 14 1 9.2622 -0.8049 -3.7198 15 1 9.6891 -2.8692 -2.5211 16 1 7.5733 -2.5441 -3.6605 17 16 5.1195 1.0880 2.5273 18 6 3.7326 1.8502 3.4243 19 1 3.9854 2.8720 3.7075 20 6 3.4097 1.0170 4.6786 21 16 1.5750 1.1046 4.7583 22 8 1.0601 -0.0909 5.3280 23 8 1.1748 2.3700 5.2661 24 6 1.3582 1.0688 2.9339 25 6 2.5848 1.8601 2.4169 26 1 2.2745 2.8944 2.2689 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6214 1.4026 -0.9313 31 1 1.3585 2.1317 0.0894 32 1 9.5862 -1.3187 -0.2722 33 1 3.7426 -0.0135 4.5545 34 1 3.8599 1.4630 5.5655 35 1 1.3753 0.0435 2.5644 36 1 0.4310 1.5646 2.6467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009487121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:48 Heat of formation + Delta-G solvation = -33.593671 kcal Electronic energy + Delta-G solvation = -24131.230168 eV Core-core repulsion = 20449.899204 eV Total energy + Delta-G solvation = -3681.330964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.57564 -37.50603 -37.25409 -36.24836 -35.10403 -33.72664 -32.72829 -31.44594 -29.85163 -27.37078 -26.80112 -25.00486 -23.11425 -20.82344 -20.22785 -19.28258 -18.97279 -17.98628 -16.98277 -16.44867 -16.22147 -15.90198 -15.74562 -15.58091 -15.23384 -14.81955 -14.33135 -14.26740 -13.82219 -13.35832 -13.24176 -13.01370 -12.93590 -12.45921 -12.28849 -12.22785 -12.12581 -11.81517 -11.50867 -11.38239 -11.25461 -11.18915 -10.86099 -10.69970 -10.62215 -10.43224 -9.98327 -9.46813 -9.02711 -8.70535 -7.94012 -7.61983 -7.49655 -6.42047 -4.81451 -0.22655 1.72479 2.01355 2.16732 2.26999 2.49170 3.06791 3.07351 3.12665 3.17603 3.29580 3.64697 3.88570 3.99866 4.18821 4.29798 4.51741 4.59375 4.71361 4.91134 4.99957 5.09306 5.30892 5.37211 5.41993 5.57205 5.68558 5.75876 5.85135 5.95346 6.50381 6.58189 6.88494 7.23845 7.30596 8.05508 8.43369 8.78059 8.78809 10.30248 10.50193 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.018987 B = 0.003909 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.347877 B = 7161.716973 C = 8101.340283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.158 3.842 4 N -0.586 5.586 5 C 0.410 3.590 6 N -0.571 5.571 7 C 0.487 3.513 8 O -0.551 6.551 9 C -0.475 4.475 10 H 0.079 0.921 11 C 0.074 3.926 12 N -0.748 5.748 13 Si 0.916 3.084 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.262 1.262 17 S 0.000 6.000 18 C -0.162 4.162 19 H 0.134 0.866 20 C -0.547 4.547 21 S 2.380 3.620 22 O -0.933 6.933 23 O -0.929 6.929 24 C -0.596 4.596 25 C 0.167 3.833 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.274 0.726 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 5.517 5.447 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C 0.033 3.967 4 N -0.306 5.306 5 C 0.030 3.970 6 N -0.318 5.318 7 C 0.295 3.705 8 O -0.439 6.439 9 C -0.510 4.510 10 H 0.097 0.903 11 C -0.148 4.148 12 N -0.377 5.377 13 Si 0.740 3.260 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.185 1.185 17 S 0.228 5.772 18 C -0.291 4.291 19 H 0.152 0.848 20 C -0.679 4.679 21 S 2.563 3.437 22 O -0.930 6.930 23 O -0.926 6.926 24 C -0.726 4.726 25 C 0.059 3.941 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.318 5.167 6.398 15.653 hybrid contribution 0.013 -0.173 -1.426 1.437 sum -13.305 4.994 4.972 15.056 Atomic orbital electron populations 1.23806 0.95639 1.01743 1.02237 1.23450 0.95916 0.99826 0.98143 1.20563 0.91449 0.94840 0.89871 1.46039 1.09490 1.64918 1.10143 1.24655 0.86919 0.91316 0.94068 1.69211 1.20207 1.22279 1.20084 1.19195 0.80657 0.80690 0.89984 1.90511 1.60414 1.58092 1.34898 1.20903 0.96112 1.36988 0.97023 0.90286 1.25932 0.96883 0.94530 0.97406 1.69998 1.07517 1.32664 1.27534 0.86208 0.79108 0.79213 0.81442 1.19442 1.20198 1.18549 1.88785 1.10467 1.72296 1.05701 1.24392 1.02390 1.05622 0.96657 0.84808 1.30533 1.23873 1.09494 1.03964 1.09551 0.79919 0.75397 0.78880 1.93625 1.77290 1.47014 1.75052 1.93633 1.80464 1.41569 1.76968 1.31168 1.05620 1.10832 1.24999 1.20922 0.90643 0.98472 0.84038 0.87901 0.88723 0.88420 0.86689 0.87772 0.90455 0.91554 0.83278 0.83659 0.83405 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 14.32 29.01 0.42 -1.40 16 2 C -0.15 -1.81 8.09 -36.02 -0.29 -2.10 16 3 C 0.16 1.94 5.74 -5.19 -0.03 1.91 16 4 N -0.59 -8.40 2.59 -168.57 -0.44 -8.84 16 5 C 0.41 8.14 7.85 -88.78 -0.70 7.44 16 6 N -0.57 -13.76 9.77 -13.34 -0.13 -13.89 16 7 C 0.49 13.93 7.67 -13.20 -0.10 13.83 16 8 O -0.55 -16.78 12.32 4.88 0.06 -16.72 16 9 C -0.48 -13.46 9.64 -35.59 -0.34 -13.80 16 10 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 11 C 0.07 2.00 5.50 -17.37 -0.10 1.91 16 12 N -0.75 -21.49 11.83 55.55 0.66 -20.83 16 13 Si 0.92 19.58 29.56 -169.99 -5.02 14.56 16 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 15 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 17 S 0.00 0.00 19.29 -107.50 -2.07 -2.07 16 18 C -0.16 -1.88 3.65 -26.35 -0.10 -1.98 16 19 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 20 C -0.55 -5.20 6.93 37.68 0.26 -4.94 16 21 S 2.38 22.49 6.07 -107.50 -0.65 21.84 16 22 O -0.93 -12.07 18.16 -57.67 -1.05 -13.11 16 23 O -0.93 -10.90 18.16 -57.67 -1.05 -11.94 16 24 C -0.60 -5.13 6.08 38.14 0.23 -4.90 16 25 C 0.17 1.80 3.22 -67.97 -0.22 1.58 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 0.71 7.84 -52.49 -0.41 0.30 16 28 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.10 1.49 7.65 -51.93 -0.40 1.10 16 31 H 0.08 0.70 7.74 -51.93 -0.40 0.29 16 32 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 33 H 0.15 1.50 7.80 -51.93 -0.41 1.09 16 34 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.15 1.38 6.94 -51.93 -0.36 1.02 16 36 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -38.18 330.54 -9.74 -47.91 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.06 Total: 0.57 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -0.96 Total: -2.45 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.09 Total: -43.56 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.03 Total: -41.77 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 22.50 SS G_CDS: -2.73 Total: 19.77 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -38.18 -9.74 -47.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009487121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.321 kcal (2) G-P(sol) polarization free energy of solvation -38.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds