Wall clock time and date at job start Tue Mar 31 2020 05:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47136 * 332.14875 * 3 2 1 5 5 C 1.52999 * 109.46940 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47152 * 55.00182 * 5 4 3 7 7 C 1.52998 * 109.47217 * 175.00535 * 5 4 3 8 8 C 1.47197 * 109.47230 * 187.42578 * 7 5 4 9 9 N 7.21580 * 156.36329 * 323.34660 * 2 1 3 10 10 N 1.46903 * 109.46971 * 295.00180 * 5 4 3 11 11 C 1.46953 * 111.00102 * 288.74464 * 10 5 4 12 12 C 1.53060 * 109.36579 * 176.80893 * 11 10 5 13 13 N 1.46961 * 109.35867 * 58.40447 * 12 11 10 14 14 C 1.46903 * 110.99944 * 176.80777 * 13 12 11 15 15 H 1.08993 * 109.47035 * 168.67759 * 14 13 12 16 16 C 1.53003 * 109.46467 * 48.67915 * 14 13 12 17 17 C 1.47202 * 109.46904 * 67.21168 * 16 14 13 18 18 N 7.02419 * 138.39258 * 101.19929 * 2 1 3 19 19 C 1.52998 * 109.47393 * 288.68559 * 14 13 12 20 20 C 1.50700 * 109.46558 * 294.99683 * 19 14 13 21 21 H 1.08001 * 120.00875 * 0.02562 * 20 19 14 22 22 C 1.37886 * 119.99975 * 179.97438 * 20 19 14 23 23 N 1.31512 * 119.99497 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47004 * 60.00263 * 24 22 20 26 26 H 1.48506 * 109.46903 * 180.02562 * 24 22 20 27 27 H 1.48491 * 109.47421 * 300.00207 * 24 22 20 28 28 C 1.46951 * 110.88319 * 300.67944 * 13 12 11 29 29 C 1.46961 * 110.99659 * 164.94727 * 10 5 4 30 30 H 1.09005 * 109.47139 * 212.15201 * 3 2 1 31 31 H 1.08993 * 109.47231 * 92.15751 * 3 2 1 32 32 H 1.08997 * 109.46509 * 60.00674 * 4 3 2 33 33 H 1.08995 * 109.47052 * 300.00396 * 4 3 2 34 34 H 1.09004 * 109.47365 * 67.42210 * 7 5 4 35 35 H 1.09001 * 109.46754 * 307.42375 * 7 5 4 36 36 H 1.08997 * 109.49280 * 296.77933 * 11 10 5 37 37 H 1.08999 * 109.48837 * 56.85153 * 11 10 5 38 38 H 1.08998 * 109.48855 * 298.44033 * 12 11 10 39 39 H 1.08998 * 109.50350 * 178.38100 * 12 11 10 40 40 H 1.09007 * 109.46893 * 187.20301 * 16 14 13 41 41 H 1.09000 * 109.47706 * 307.20714 * 16 14 13 42 42 H 1.09000 * 109.47161 * 54.99334 * 19 14 13 43 43 H 1.08992 * 109.47488 * 175.00054 * 19 14 13 44 44 H 0.97005 * 119.99820 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.48932 * 299.35650 * 28 13 12 46 46 H 1.08998 * 109.51030 * 179.29843 * 28 13 12 47 47 H 1.08998 * 109.49252 * 303.15274 * 29 10 5 48 48 H 1.09003 * 109.48930 * 63.20233 * 29 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2746 0.6739 5 6 4.6486 -1.2735 0.6745 6 1 5.0111 -0.3590 1.1437 7 6 5.1591 -2.4852 1.4568 8 6 6.6200 -2.3902 1.6102 9 7 7.7464 -2.3210 1.7271 10 7 5.1387 -1.3418 -0.7087 11 6 4.8997 -2.6714 -1.2871 12 6 5.3507 -2.6772 -2.7497 13 7 6.7752 -2.3231 -2.8216 14 6 7.2655 -2.3914 -4.2048 15 1 8.2543 -1.9366 -4.2626 16 6 6.3028 -1.6379 -5.1248 17 6 6.3515 -0.1999 -4.8139 18 7 6.3881 0.9059 -4.5754 19 6 7.3505 -3.8545 -4.6440 20 6 8.3892 -4.5676 -3.8172 21 1 8.9340 -4.0311 -3.0544 22 6 8.6435 -5.9054 -4.0338 23 7 7.9799 -6.5588 -4.9623 24 14 9.9316 -6.7891 -3.0094 25 1 9.5535 -6.7235 -1.5749 26 1 10.0140 -8.2093 -3.4357 27 1 11.2514 -6.1370 -3.2037 28 6 7.0143 -0.9935 -2.2432 29 6 6.5632 -0.9877 -0.7806 30 1 2.9709 0.8709 0.5469 31 1 2.9713 0.0395 -1.0269 32 1 2.7557 -2.1447 0.1270 33 1 2.7552 -1.3133 1.7008 34 1 4.9091 -3.3983 0.9166 35 1 4.6911 -2.5056 2.4410 36 1 5.4652 -3.4178 -0.7292 37 1 3.8365 -2.9055 -1.2336 38 1 4.7663 -1.9500 -3.3133 39 1 5.2011 -3.6705 -3.1727 40 1 6.5946 -1.7952 -6.1632 41 1 5.2892 -2.0085 -4.9721 42 1 6.3817 -4.3334 -4.5021 43 1 7.6287 -3.9023 -5.6968 44 1 8.1585 -7.5001 -5.1145 45 1 6.4488 -0.2472 -2.8011 46 1 8.0774 -0.7591 -2.2968 47 1 6.7128 0.0058 -0.3579 48 1 7.1476 -1.7147 -0.2166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019365443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:03 Heat of formation + Delta-G solvation = 108.430127 kcal Electronic energy + Delta-G solvation = -28914.580153 eV Core-core repulsion = 25198.721678 eV Total energy + Delta-G solvation = -3715.858475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31774 -38.41904 -36.99703 -36.27688 -35.74659 -34.13722 -32.63052 -31.55430 -30.71099 -30.08045 -28.18770 -26.46071 -25.03559 -23.78775 -23.45542 -21.07252 -20.08458 -19.08965 -18.06403 -17.41862 -17.24148 -16.97598 -15.98203 -15.61502 -15.38906 -15.19824 -14.92368 -14.70358 -14.49776 -14.18225 -13.99135 -13.88409 -13.35843 -13.25854 -12.98106 -12.90648 -12.76698 -12.65413 -12.51167 -12.18974 -12.13654 -12.02021 -11.84133 -11.79048 -11.65096 -11.52387 -11.30980 -11.23240 -11.13183 -10.88433 -10.68657 -10.62786 -10.40089 -10.32850 -10.07363 -9.45271 -9.10955 -8.37577 -8.33785 -7.60959 -5.97876 -3.95407 2.51608 2.61440 2.70593 2.74864 3.00251 3.02375 3.36672 3.40701 3.45571 3.63805 3.70965 3.92205 4.26349 4.34225 4.44909 4.51443 4.65331 4.81961 4.89352 4.94439 5.11664 5.18509 5.24526 5.27151 5.34900 5.40195 5.43915 5.47114 5.51111 5.59484 5.64719 5.68708 5.75302 5.78397 5.82968 5.99541 6.14829 6.25138 6.27029 6.34424 6.67184 6.89770 6.95927 7.36499 7.37727 7.48320 7.50184 7.72075 7.76942 7.81907 8.02574 8.45200 9.09602 9.67073 11.13756 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.004001 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.667694 B = 6996.924872 C = 8160.392193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.209 3.791 3 C -0.021 4.021 4 C -0.104 4.104 5 C 0.089 3.911 6 H 0.095 0.905 7 C -0.068 4.068 8 C 0.203 3.797 9 N -0.423 5.423 10 N -0.529 5.529 11 C 0.047 3.953 12 C 0.053 3.947 13 N -0.507 5.507 14 C 0.100 3.900 15 H 0.078 0.922 16 C -0.077 4.077 17 C 0.220 3.780 18 N -0.456 5.456 19 C 0.035 3.965 20 C -0.491 4.491 21 H 0.059 0.941 22 C 0.055 3.945 23 N -0.901 5.901 24 Si 0.887 3.113 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.041 3.959 29 C 0.045 3.955 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.259 0.741 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 9.349 9.530 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.109 4.109 3 C -0.061 4.061 4 C -0.143 4.143 5 C -0.021 4.021 6 H 0.113 0.887 7 C -0.110 4.110 8 C -0.114 4.114 9 N -0.100 5.100 10 N -0.253 5.253 11 C -0.080 4.080 12 C -0.075 4.075 13 N -0.231 5.231 14 C -0.010 4.010 15 H 0.096 0.904 16 C -0.119 4.119 17 C -0.096 4.096 18 N -0.134 5.134 19 C -0.002 4.002 20 C -0.530 4.530 21 H 0.077 0.923 22 C -0.145 4.145 23 N -0.542 5.542 24 Si 0.716 3.284 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.088 4.088 29 C -0.083 4.083 30 H 0.124 0.876 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.857 10.938 9.976 17.785 hybrid contribution 0.814 -1.096 0.371 1.415 sum -9.042 9.842 10.347 16.903 Atomic orbital electron populations 1.81239 1.13313 1.08695 1.09258 1.29421 0.95492 0.93087 0.92872 1.19252 0.80668 1.00314 1.05909 1.21544 0.93544 0.97634 1.01587 1.21749 0.94781 0.96903 0.88713 0.88735 1.20099 0.83072 1.03370 1.04429 1.28786 0.95185 0.94220 0.93255 1.81246 1.12630 1.07597 1.08479 1.62414 1.17989 1.28833 1.16088 1.22362 1.00619 0.89089 0.95966 1.22235 0.88461 1.01854 0.94922 1.62236 1.16248 1.25268 1.19334 1.22064 0.95272 0.99693 0.83950 0.90395 1.20448 1.05149 0.82024 1.04254 1.29202 0.92985 0.95359 0.92035 1.80987 1.09142 1.13306 1.09940 1.19164 0.98094 0.86498 0.96437 1.21023 1.19752 0.94226 1.17996 0.92269 1.24933 0.96381 0.97724 0.95424 1.69929 1.41899 1.09622 1.32741 0.86734 0.82380 0.78499 0.80784 1.20479 1.21621 1.20506 1.22444 1.00602 0.91465 0.94264 1.22461 0.87483 1.00591 0.97741 0.87616 0.86021 0.90049 0.90207 0.86414 0.86830 0.92979 0.90059 0.94622 0.88733 0.86966 0.87257 0.95754 0.95755 0.93166 0.93367 0.91178 0.91202 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.23 18.54 42.15 0.78 -4.45 16 2 C 0.21 1.69 15.43 -20.76 -0.32 1.37 16 3 C -0.02 -0.10 5.59 -29.52 -0.16 -0.26 16 4 C -0.10 -0.39 4.64 -26.73 -0.12 -0.51 16 5 C 0.09 0.49 1.94 -67.71 -0.13 0.36 16 6 H 0.09 0.47 7.91 -51.93 -0.41 0.06 16 7 C -0.07 -0.40 4.73 -29.52 -0.14 -0.54 16 8 C 0.20 2.20 12.36 -20.81 -0.26 1.95 16 9 N -0.42 -6.22 17.58 42.10 0.74 -5.48 16 10 N -0.53 -4.68 4.08 -226.48 -0.92 -5.60 16 11 C 0.05 0.48 4.64 -3.76 -0.02 0.46 16 12 C 0.05 0.69 4.63 -3.76 -0.02 0.68 16 13 N -0.51 -7.92 4.34 -226.48 -0.98 -8.90 16 14 C 0.10 1.65 1.89 -67.71 -0.13 1.53 16 15 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 16 C -0.08 -1.00 4.73 -29.52 -0.14 -1.14 16 17 C 0.22 3.10 12.35 -20.90 -0.26 2.84 16 18 N -0.46 -7.21 17.54 41.99 0.74 -6.47 16 19 C 0.04 0.75 4.45 -27.88 -0.12 0.62 16 20 C -0.49 -12.44 8.84 -34.44 -0.30 -12.74 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.47 5.46 -17.82 -0.10 1.38 16 23 N -0.90 -25.05 13.29 55.43 0.74 -24.31 16 24 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.04 0.59 4.97 -3.77 -0.02 0.57 16 29 C 0.05 0.55 4.97 -3.76 -0.02 0.53 16 30 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.12 0.66 7.75 -51.93 -0.40 0.26 16 32 H 0.08 0.33 6.50 -51.93 -0.34 -0.01 16 33 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.12 0.69 5.92 -51.93 -0.31 0.38 16 35 H 0.11 0.32 8.13 -51.93 -0.42 -0.11 16 36 H 0.05 0.61 6.17 -51.93 -0.32 0.29 16 37 H 0.08 0.62 6.47 -51.93 -0.34 0.28 16 38 H 0.04 0.43 6.16 -51.93 -0.32 0.11 16 39 H 0.09 1.39 6.48 -51.93 -0.34 1.05 16 40 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.11 1.26 5.94 -51.93 -0.31 0.96 16 42 H 0.02 0.54 6.50 -51.93 -0.34 0.20 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.05 0.70 4.32 -51.93 -0.22 0.47 16 46 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 47 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 48 H 0.06 0.81 4.33 -51.93 -0.23 0.58 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -33.12 383.00 -7.19 -40.31 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.77 Total: -4.07 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.26 Total: -2.91 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 1.09 Total: -55.22 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.12 -7.19 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019365443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.738 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds