Wall clock time and date at job start Tue Mar 31 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47200 * 198.62605 * 3 2 1 5 5 C 1.52995 * 109.47359 * 184.89669 * 4 3 2 6 6 H 1.09005 * 109.46622 * 305.50790 * 5 4 3 7 7 C 1.52999 * 109.47174 * 185.51324 * 5 4 3 8 8 C 1.47192 * 109.47182 * 172.88511 * 7 5 4 9 9 N 7.22043 * 156.76004 * 200.81032 * 2 1 3 10 10 N 1.46898 * 109.47401 * 65.50923 * 5 4 3 11 11 C 1.46955 * 110.99910 * 74.20281 * 10 5 4 12 12 C 1.53056 * 109.36253 * 183.18730 * 11 10 5 13 13 N 1.46955 * 109.36558 * 301.60100 * 12 11 10 14 14 C 1.46902 * 110.99755 * 183.18576 * 13 12 11 15 15 H 1.09004 * 109.46839 * 194.26766 * 14 13 12 16 16 C 1.52999 * 109.47553 * 314.26859 * 14 13 12 17 17 C 1.47191 * 109.47085 * 293.32552 * 16 14 13 18 18 N 6.79115 * 133.13116 * 74.72739 * 2 1 3 19 19 C 1.52998 * 109.46753 * 74.27305 * 14 13 12 20 20 C 1.50704 * 109.47386 * 65.29802 * 19 14 13 21 21 H 1.07991 * 119.99715 * 355.03998 * 20 19 14 22 22 C 1.37874 * 119.99860 * 175.04259 * 20 19 14 23 23 N 1.31513 * 120.00427 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99901 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47363 * 59.99370 * 24 22 20 26 26 H 1.48503 * 109.47036 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46799 * 299.99855 * 24 22 20 28 28 C 1.46963 * 110.87838 * 59.32291 * 13 12 11 29 29 C 1.46951 * 111.00191 * 198.00735 * 10 5 4 30 30 H 1.09005 * 109.47150 * 78.62385 * 3 2 1 31 31 H 1.08998 * 109.47232 * 318.62839 * 3 2 1 32 32 H 1.09004 * 109.47039 * 64.89059 * 4 3 2 33 33 H 1.09007 * 109.47026 * 304.89472 * 4 3 2 34 34 H 1.09004 * 109.46947 * 292.88324 * 7 5 4 35 35 H 1.09002 * 109.47287 * 52.88250 * 7 5 4 36 36 H 1.09002 * 109.48340 * 63.22450 * 11 10 5 37 37 H 1.08994 * 109.50933 * 303.16987 * 11 10 5 38 38 H 1.08997 * 109.48944 * 181.63419 * 12 11 10 39 39 H 1.09000 * 109.50116 * 61.58162 * 12 11 10 40 40 H 1.09007 * 109.46391 * 53.31959 * 16 14 13 41 41 H 1.08990 * 109.47060 * 173.31577 * 16 14 13 42 42 H 1.08994 * 109.47295 * 305.29148 * 19 14 13 43 43 H 1.09002 * 109.47012 * 185.29941 * 19 14 13 44 44 H 0.96996 * 120.00176 * 179.97438 * 23 22 20 45 45 H 1.08994 * 109.49231 * 60.64695 * 28 13 12 46 46 H 1.08997 * 109.48672 * 180.71049 * 28 13 12 47 47 H 1.09006 * 109.49070 * 296.77858 * 29 10 5 48 48 H 1.09003 * 109.49071 * 56.81640 * 29 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3678 0.4607 5 6 4.6423 1.4095 0.3446 6 1 5.0715 0.5707 0.8927 7 6 5.1629 2.7226 0.9326 8 6 6.6338 2.6911 0.9775 9 7 7.7705 2.6632 1.0122 10 7 5.0285 1.3193 -1.0698 11 6 4.7634 2.5839 -1.7698 12 6 5.1039 2.4238 -3.2534 13 7 6.5143 2.0348 -3.3905 14 6 6.9004 1.9445 -4.8050 15 1 7.8518 1.4192 -4.8891 16 6 5.8252 1.1795 -5.5793 17 6 5.7994 -0.2215 -5.1288 18 7 5.7789 -1.3055 -4.7811 19 6 7.0424 3.3529 -5.3857 20 6 8.1884 4.0614 -4.7107 21 1 8.7071 3.5888 -3.8898 22 6 8.5745 5.3131 -5.1411 23 7 7.9431 5.8885 -6.1410 24 14 9.9955 6.1911 -4.3048 25 1 11.2275 5.3720 -4.4324 26 1 10.2103 7.5112 -4.9501 27 1 9.6786 6.3879 -2.8674 28 6 6.7793 0.7701 -2.6905 29 6 6.4389 0.9302 -1.2070 30 1 2.9714 -0.2019 -1.0075 31 1 2.9717 -0.7704 0.6792 32 1 2.8273 1.5328 1.4984 33 1 2.6838 2.1472 -0.1661 34 1 4.8361 3.5547 0.3089 35 1 4.7712 2.8493 1.9419 36 1 5.3785 3.3739 -1.3387 37 1 3.7104 2.8446 -1.6644 38 1 4.9356 3.3691 -3.7692 39 1 4.4697 1.6528 -3.6911 40 1 4.8525 1.6372 -5.3987 41 1 6.0509 1.2145 -6.6451 42 1 6.1209 3.9100 -5.2172 43 1 7.2362 3.2866 -6.4563 44 1 8.2145 6.7692 -6.4435 45 1 6.1643 -0.0199 -3.1215 46 1 7.8324 0.5098 -2.7959 47 1 7.0731 1.7014 -0.7696 48 1 6.6073 -0.0149 -0.6908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019365445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:07 Heat of formation + Delta-G solvation = 106.098250 kcal Electronic energy + Delta-G solvation = -28902.079780 eV Core-core repulsion = 25186.120188 eV Total energy + Delta-G solvation = -3715.959593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.30626 -38.38586 -36.97943 -36.18730 -35.65289 -34.13719 -32.63338 -31.57000 -30.71298 -30.08756 -28.18363 -26.46469 -25.03262 -23.80846 -23.44696 -21.05670 -20.08499 -19.10437 -18.06548 -17.42122 -17.25316 -16.96173 -15.97336 -15.59435 -15.39250 -15.19837 -14.91597 -14.69636 -14.49730 -14.17669 -14.00392 -13.87124 -13.35108 -13.23597 -12.97020 -12.89583 -12.75560 -12.65614 -12.47738 -12.20845 -12.12242 -12.01626 -11.82524 -11.78296 -11.62361 -11.52361 -11.32762 -11.22647 -11.13163 -10.88971 -10.69055 -10.62448 -10.41931 -10.34706 -10.06295 -9.45807 -9.10150 -8.38384 -8.33434 -7.61425 -5.97307 -3.94934 2.51569 2.61863 2.69782 2.73742 2.96371 2.98502 3.37206 3.41140 3.46132 3.63884 3.70047 3.92029 4.25280 4.33505 4.44093 4.51899 4.66186 4.80874 4.88596 4.93860 5.10852 5.18451 5.23978 5.26733 5.34439 5.39888 5.43551 5.47125 5.50997 5.58421 5.64135 5.68808 5.74526 5.77987 5.82422 5.98440 6.14176 6.23072 6.27029 6.32478 6.67782 6.89270 6.95114 7.37179 7.38126 7.48021 7.50677 7.71928 7.76923 7.82152 8.03307 8.46460 9.10769 9.67778 11.14354 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.003983 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.650307 B = 7028.883805 C = 8316.753843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.209 3.791 3 C -0.023 4.023 4 C -0.103 4.103 5 C 0.089 3.911 6 H 0.094 0.906 7 C -0.066 4.066 8 C 0.200 3.800 9 N -0.420 5.420 10 N -0.529 5.529 11 C 0.048 3.952 12 C 0.053 3.947 13 N -0.508 5.508 14 C 0.100 3.900 15 H 0.078 0.922 16 C -0.075 4.075 17 C 0.218 3.782 18 N -0.455 5.455 19 C 0.036 3.964 20 C -0.492 4.492 21 H 0.060 0.940 22 C 0.055 3.945 23 N -0.902 5.902 24 Si 0.887 3.113 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.042 3.958 29 C 0.046 3.954 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.036 0.964 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.020 0.980 43 H 0.028 0.972 44 H 0.259 0.741 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 -7.931 11.643 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.108 4.108 3 C -0.063 4.063 4 C -0.142 4.142 5 C -0.022 4.022 6 H 0.112 0.888 7 C -0.108 4.108 8 C -0.117 4.117 9 N -0.097 5.097 10 N -0.253 5.253 11 C -0.080 4.080 12 C -0.075 4.075 13 N -0.231 5.231 14 C -0.010 4.010 15 H 0.096 0.904 16 C -0.117 4.117 17 C -0.098 4.098 18 N -0.134 5.134 19 C -0.001 4.001 20 C -0.530 4.530 21 H 0.078 0.922 22 C -0.145 4.145 23 N -0.542 5.542 24 Si 0.716 3.284 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.087 4.087 29 C -0.082 4.082 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.832 -9.440 12.102 18.227 hybrid contribution 0.908 1.057 0.220 1.411 sum -8.924 -8.383 12.322 17.371 Atomic orbital electron populations 1.81237 1.13309 1.08622 1.09341 1.29400 0.95475 0.93112 0.92838 1.19268 0.80782 0.99669 1.06548 1.21531 0.93734 0.96498 1.02443 1.21741 0.95275 0.95524 0.89649 0.88764 1.20087 0.82690 1.02664 1.05347 1.28932 0.95219 0.94123 0.93457 1.81378 1.12644 1.07544 1.08168 1.62394 1.20968 1.32012 1.09973 1.22357 1.00673 0.90243 0.94722 1.22232 0.88913 1.01353 0.94998 1.62255 1.19036 1.29023 1.12818 1.22083 0.94477 0.99515 0.84916 0.90374 1.20442 1.04918 0.83011 1.03306 1.29511 0.92801 0.95212 0.92276 1.81267 1.09322 1.12727 1.10037 1.19152 0.97802 0.87387 0.95771 1.21035 1.14859 1.01061 1.16087 0.92190 1.24938 0.96720 0.97652 0.95174 1.69925 1.41438 1.15835 1.27028 0.86736 0.83192 0.78754 0.79727 1.20495 1.21622 1.20469 1.22424 1.00862 0.92141 0.93293 1.22438 0.87839 1.00546 0.97394 0.85928 0.87676 0.90187 0.90140 0.86418 0.86835 0.92979 0.90109 0.88924 0.94586 0.87224 0.86940 0.96141 0.95419 0.93163 0.93414 0.91091 0.92513 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.27 18.54 42.15 0.78 -4.49 16 2 C 0.21 1.72 15.43 -20.76 -0.32 1.40 16 3 C -0.02 -0.10 5.65 -29.52 -0.17 -0.27 16 4 C -0.10 -0.38 4.68 -26.73 -0.13 -0.51 16 5 C 0.09 0.48 1.92 -67.72 -0.13 0.35 16 6 H 0.09 0.46 7.86 -51.93 -0.41 0.05 16 7 C -0.07 -0.38 4.71 -29.52 -0.14 -0.52 16 8 C 0.20 2.17 12.33 -20.71 -0.26 1.91 16 9 N -0.42 -6.23 17.58 42.22 0.74 -5.49 16 10 N -0.53 -4.67 4.00 -226.49 -0.91 -5.58 16 11 C 0.05 0.48 4.53 -3.77 -0.02 0.46 16 12 C 0.05 0.69 4.53 -3.77 -0.02 0.67 16 13 N -0.51 -7.92 4.32 -226.49 -0.98 -8.90 16 14 C 0.10 1.66 1.88 -67.71 -0.13 1.53 16 15 H 0.08 1.39 7.86 -51.93 -0.41 0.99 16 16 C -0.07 -0.97 4.70 -29.52 -0.14 -1.11 16 17 C 0.22 3.07 12.30 -20.68 -0.25 2.82 16 18 N -0.46 -7.22 17.57 42.25 0.74 -6.47 16 19 C 0.04 0.77 4.49 -27.88 -0.13 0.65 16 20 C -0.49 -12.52 8.84 -34.44 -0.30 -12.82 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.48 5.46 -17.82 -0.10 1.38 16 23 N -0.90 -25.21 13.29 55.43 0.74 -24.48 16 24 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.04 0.60 5.04 -3.77 -0.02 0.58 16 29 C 0.05 0.55 5.04 -3.77 -0.02 0.53 16 30 H 0.12 0.69 7.64 -51.93 -0.40 0.30 16 31 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.33 6.64 -51.93 -0.34 -0.01 16 34 H 0.12 0.67 5.94 -51.93 -0.31 0.36 16 35 H 0.11 0.30 8.13 -51.93 -0.42 -0.12 16 36 H 0.05 0.61 6.05 -51.93 -0.31 0.29 16 37 H 0.08 0.61 6.62 -51.93 -0.34 0.27 16 38 H 0.09 1.33 6.63 -51.93 -0.34 0.98 16 39 H 0.04 0.44 6.03 -51.93 -0.31 0.12 16 40 H 0.11 1.27 5.96 -51.92 -0.31 0.96 16 41 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.02 0.45 6.65 -51.93 -0.35 0.11 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.05 0.69 4.39 -51.93 -0.23 0.46 16 46 H 0.07 1.12 8.01 -51.93 -0.42 0.70 16 47 H 0.06 0.80 4.42 -51.93 -0.23 0.57 16 48 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -33.41 383.12 -7.16 -40.57 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.78 Total: -4.23 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.26 Total: -2.96 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 1.12 Total: -55.40 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.41 -7.16 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019365445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.672 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds