Wall clock time and date at job start Tue Mar 31 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 N 1.46502 * 109.46819 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.99382 * 269.99607 * 4 3 2 6 6 C 1.50696 * 109.47394 * 269.99799 * 5 4 3 7 7 H 1.08002 * 120.00236 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00181 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00167 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99858 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47491 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47244 * 120.00264 * 10 8 6 13 13 H 1.48504 * 109.47106 * 240.00243 * 10 8 6 14 14 C 1.34771 * 120.00295 * 90.00008 * 4 3 2 15 15 O 1.21590 * 120.00121 * 179.97438 * 14 4 3 16 16 N 1.34773 * 120.00046 * 359.97438 * 14 4 3 17 17 C 1.40003 * 120.00175 * 184.59567 * 16 14 4 18 18 C 1.38883 * 120.04778 * 324.88871 * 17 16 14 19 19 C 1.38099 * 119.96659 * 180.02562 * 18 17 16 20 20 C 1.38381 * 120.07150 * 0.02562 * 19 18 17 21 21 Cl 1.73591 * 119.95047 * 180.26921 * 20 19 18 22 22 C 1.38476 * 120.09983 * 359.97438 * 20 19 18 23 23 Cl 1.73600 * 119.98745 * 180.02562 * 22 20 19 24 24 C 1.38248 * 120.03196 * 0.02562 * 22 20 19 25 25 H 1.09000 * 109.46601 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47352 * 299.99971 * 1 2 3 27 27 H 1.09001 * 109.47296 * 60.00400 * 1 2 3 28 28 H 1.09002 * 109.47352 * 240.00029 * 2 1 3 29 29 H 1.09001 * 109.47296 * 119.99599 * 2 1 3 30 30 H 1.08993 * 109.47278 * 59.99659 * 3 2 1 31 31 H 1.09001 * 109.46891 * 299.99848 * 3 2 1 32 32 H 1.09000 * 109.47483 * 30.00724 * 5 4 3 33 33 H 1.09007 * 109.46871 * 150.00562 * 5 4 3 34 34 H 0.96995 * 119.99948 * 179.97438 * 9 8 6 35 35 H 0.97005 * 119.99849 * 4.59967 * 16 14 4 36 36 H 1.08001 * 120.01444 * 0.02562 * 18 17 16 37 37 H 1.08000 * 119.96562 * 180.02562 * 19 18 17 38 38 H 1.07994 * 120.03731 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2379 1.4425 1.2679 6 6 4.4892 2.8632 1.7030 7 1 4.1378 3.6842 1.0956 8 6 5.1678 3.1151 2.8764 9 7 5.5963 2.1154 3.6159 10 14 5.4787 4.8762 3.4161 11 1 4.8995 5.8097 2.4170 12 1 4.8422 5.1088 4.7374 13 1 6.9413 5.1103 3.5231 14 6 4.1784 1.4428 -1.1680 15 8 5.3943 1.4433 -1.1685 16 7 3.5041 1.4424 -2.3349 17 6 4.2003 1.3455 -3.5457 18 6 5.4443 1.9475 -3.6827 19 6 6.1294 1.8513 -4.8780 20 6 5.5774 1.1560 -5.9395 21 17 6.4443 1.0311 -7.4382 22 6 4.3372 0.5546 -5.8060 23 17 3.6478 -0.3174 -7.1394 24 6 3.6478 0.6483 -4.6114 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.6491 0.9285 2.0277 33 1 5.1903 0.9288 1.1371 34 1 6.0740 2.2926 4.4412 35 1 2.5364 1.5094 -2.3359 36 1 5.8757 2.4907 -2.8549 37 1 7.0969 2.3191 -4.9844 38 1 2.6804 0.1797 -4.5074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019691482.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:17 Heat of formation + Delta-G solvation = -18.079417 kcal Electronic energy + Delta-G solvation = -23296.556999 eV Core-core repulsion = 19611.811371 eV Total energy + Delta-G solvation = -3684.745628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54054 -38.89461 -36.76845 -36.60922 -35.83668 -34.45378 -33.16209 -32.10176 -30.99123 -29.44809 -27.40636 -25.71171 -23.58236 -23.16778 -22.08323 -21.58729 -19.55157 -18.28629 -17.33743 -16.74947 -16.47723 -15.78902 -15.42282 -14.70690 -14.69143 -14.51002 -14.14688 -14.07019 -13.85284 -13.56110 -13.17354 -12.57662 -12.43248 -12.06185 -11.99998 -11.99068 -11.86809 -11.58002 -11.33474 -11.20405 -11.16035 -10.98422 -10.91626 -10.67774 -10.58514 -10.20556 -10.00344 -9.70721 -9.41610 -8.98209 -8.49491 -8.17426 -7.73735 -6.10253 -4.15300 0.92730 1.02096 1.73376 2.09705 3.00460 3.25992 3.31136 3.34282 3.37901 3.78651 4.20274 4.41790 4.54031 5.00268 5.03602 5.06831 5.12797 5.21692 5.24835 5.35944 5.49754 5.52225 5.63109 5.77921 5.89637 6.01696 6.03911 6.15992 6.22017 6.35433 6.40497 6.66052 6.88129 7.24583 7.38740 7.53293 7.86666 8.15440 8.41347 8.84571 9.06612 9.50285 10.97665 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.003196 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.706542 B = 8757.496292 C =10364.254457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.111 3.889 4 N -0.603 5.603 5 C 0.260 3.740 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.699 3.301 15 O -0.565 6.565 16 N -0.694 5.694 17 C 0.201 3.799 18 C -0.105 4.105 19 C -0.078 4.078 20 C -0.057 4.057 21 Cl -0.061 7.061 22 C -0.010 4.010 23 Cl -0.056 7.056 24 C -0.140 4.140 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.405 0.595 36 H 0.161 0.839 37 H 0.144 0.856 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 -3.533 -17.370 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.014 4.014 4 N -0.336 5.336 5 C 0.141 3.859 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.401 3.599 15 O -0.441 6.441 16 N -0.344 5.344 17 C 0.103 3.897 18 C -0.126 4.126 19 C -0.097 4.097 20 C -0.086 4.086 21 Cl -0.032 7.032 22 C -0.038 4.038 23 Cl -0.027 7.027 24 C -0.162 4.162 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.001 -3.668 -17.267 18.990 hybrid contribution -0.362 0.834 0.201 0.931 sum -7.363 -2.834 -17.066 18.801 Atomic orbital electron populations 1.21704 0.95459 1.01616 1.01830 1.22022 0.95693 0.97855 1.02841 1.21496 0.81283 0.95985 1.02600 1.47629 1.05466 1.74392 1.06157 1.19276 0.92307 0.97572 0.76743 1.21468 1.36604 0.92288 1.06358 0.92389 1.24923 0.95301 0.97427 0.96359 1.69936 1.38222 1.30669 1.14391 0.86448 0.78129 0.84538 0.78322 1.19833 1.20970 1.20841 1.15916 0.85537 0.78471 0.80008 1.90898 1.11247 1.56608 1.85362 1.43042 1.10261 1.77620 1.03447 1.17440 0.93027 0.94198 0.84994 1.21607 0.94407 0.98820 0.97725 1.20968 1.00403 0.97676 0.90675 1.20664 0.93416 1.04727 0.89746 1.98363 1.75939 1.97118 1.31787 1.20316 0.93556 0.99567 0.90368 1.98374 1.84169 1.74685 1.45428 1.20635 1.02241 1.01876 0.91471 0.92753 0.92352 0.92930 0.92325 0.91000 0.89311 0.92445 0.94673 0.93639 0.92701 0.75751 0.82119 0.83821 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.15 -1.79 6.26 -26.73 -0.17 -1.95 16 3 C 0.11 1.60 5.21 -4.04 -0.02 1.58 16 4 N -0.60 -11.80 2.46 -180.80 -0.44 -12.25 16 5 C 0.26 6.43 5.16 -5.20 -0.03 6.40 16 6 C -0.53 -14.31 9.39 -34.44 -0.32 -14.64 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 10 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.70 13.65 8.12 -86.93 -0.71 12.94 16 15 O -0.57 -13.29 13.36 5.29 0.07 -13.22 16 16 N -0.69 -10.10 5.22 -14.22 -0.07 -10.17 16 17 C 0.20 2.82 6.30 -83.67 -0.53 2.29 16 18 C -0.10 -1.55 8.69 -39.39 -0.34 -1.90 16 19 C -0.08 -0.98 9.82 -39.58 -0.39 -1.37 16 20 C -0.06 -0.70 6.32 -39.44 -0.25 -0.95 16 21 Cl -0.06 -0.69 27.95 -51.86 -1.45 -2.14 16 22 C -0.01 -0.12 6.32 -39.49 -0.25 -0.37 16 23 Cl -0.06 -0.60 27.95 -51.86 -1.45 -2.05 16 24 C -0.14 -1.65 9.75 -39.36 -0.38 -2.03 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.67 6.30 -51.93 -0.33 0.34 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.40 4.62 6.52 -40.82 -0.27 4.35 16 36 H 0.16 2.77 6.22 -52.49 -0.33 2.45 16 37 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -30.57 353.34 -10.07 -40.64 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.65 Total: 2.07 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -3.11 Total: 0.59 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.22 Total: -47.43 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -2.90 Total: -4.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.57 -10.07 -40.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019691482.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.557 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds