Wall clock time and date at job start Tue Mar 31 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28825 * 124.76077 * 2 1 4 4 C 1.32514 * 117.11879 * 180.19590 * 3 2 1 5 5 C 1.48366 * 122.95522 * 179.74951 * 4 3 2 6 6 C 1.39448 * 120.02317 * 179.68338 * 5 4 3 7 7 C 1.38059 * 120.16035 * 179.97438 * 6 5 4 8 8 C 1.38522 * 120.04558 * 0.02562 * 7 6 5 9 9 C 1.39622 * 120.05287 * 0.04140 * 8 7 6 10 10 C 1.38451 * 120.07579 * 359.92847 * 9 8 7 11 11 N 1.39974 * 119.28424 * 179.91451 * 9 8 7 12 12 C 1.37099 * 120.48976 * 195.47060 * 11 9 8 13 13 H 1.08005 * 119.99915 * 222.00281 * 12 11 9 14 14 C 1.38866 * 120.00003 * 41.99390 * 12 11 9 15 15 N 1.31441 * 120.00276 * 15.50487 * 14 12 11 16 16 Si 1.86800 * 120.00091 * 195.50291 * 14 12 11 17 17 H 1.48501 * 109.47469 * 90.00252 * 16 14 12 18 18 H 1.48508 * 109.47062 * 210.00411 * 16 14 12 19 19 H 1.48503 * 109.46933 * 329.99859 * 16 14 12 20 20 C 1.35075 * 119.02221 * 15.49104 * 11 9 8 21 21 O 1.21287 * 120.12629 * 181.63055 * 20 11 9 22 22 C 1.50750 * 119.74404 * 1.64535 * 20 11 9 23 23 H 1.08998 * 109.44967 * 208.62197 * 22 20 11 24 24 C 1.52999 * 109.44606 * 88.71703 * 22 20 11 25 25 O 1.35993 * 120.54682 * 180.02562 * 8 7 6 26 26 C 1.34813 * 114.08244 * 359.48033 * 4 3 2 27 27 S 1.70918 * 124.75701 * 179.65267 * 2 1 3 28 28 H 1.08997 * 109.47054 * 180.32833 * 1 2 3 29 29 H 1.09006 * 109.46811 * 300.32536 * 1 2 3 30 30 H 1.09000 * 109.46813 * 60.32081 * 1 2 3 31 31 H 1.08002 * 119.91839 * 359.97438 * 6 5 4 32 32 H 1.07996 * 119.98461 * 180.02562 * 7 6 5 33 33 H 1.07993 * 120.14368 * 180.02562 * 10 9 8 34 34 H 0.96993 * 120.00102 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.47087 * 299.84775 * 24 22 20 36 36 H 1.09003 * 109.46889 * 59.84226 * 24 22 20 37 37 H 1.08999 * 109.47489 * 179.84395 * 24 22 20 38 38 H 1.08003 * 126.06350 * 180.23219 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2415 1.0583 0.0000 4 6 3.5548 0.8821 -0.0040 5 6 4.5203 2.0087 -0.0100 6 6 5.8911 1.7528 -0.0074 7 6 6.7920 2.7989 -0.0134 8 6 6.3360 4.1069 -0.0216 9 6 4.9646 4.3693 -0.0229 10 6 4.0580 3.3230 -0.0174 11 7 4.5216 5.6971 -0.0294 12 6 3.2213 5.9981 0.2843 13 1 2.6836 6.7361 -0.2925 14 6 2.5956 5.3539 1.3435 15 7 3.3114 4.6951 2.2274 16 14 0.7366 5.4236 1.5123 17 1 0.1301 4.2807 0.7835 18 1 0.3667 5.3473 2.9485 19 1 0.2350 6.6985 0.9391 20 6 5.3939 6.6774 -0.3497 21 8 5.0393 7.8372 -0.3329 22 6 6.8097 6.3244 -0.7284 23 1 7.4723 7.1486 -0.4642 24 6 6.8862 6.0734 -2.2357 25 8 7.2143 5.1451 -0.0282 26 6 3.9364 -0.4108 0.0035 27 16 2.4814 -1.4042 0.0085 28 1 -0.3633 -1.0276 0.0059 29 1 -0.3633 0.5189 0.8871 30 1 -0.3633 0.5088 -0.8929 31 1 6.2489 0.7338 -0.0006 32 1 7.8530 2.5975 -0.0118 33 1 2.9970 3.5246 -0.0188 34 1 2.8744 4.2455 2.9674 35 1 6.2249 5.2484 -2.5007 36 1 6.5779 6.9721 -2.7698 37 1 7.9103 5.8208 -2.5105 38 1 4.9537 -0.7735 0.0055 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020163514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:16 Heat of formation + Delta-G solvation = -11.154904 kcal Electronic energy + Delta-G solvation = -26110.380687 eV Core-core repulsion = 22430.411885 eV Total energy + Delta-G solvation = -3679.968803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.38282 -40.88083 -39.37292 -38.50572 -36.78311 -34.03534 -33.61814 -32.51905 -31.07555 -30.32537 -28.77339 -27.68580 -25.60943 -24.80009 -23.42520 -23.30643 -21.10786 -20.44403 -19.81179 -19.20767 -18.34491 -17.89025 -17.01466 -16.90682 -16.48562 -16.38734 -15.95031 -15.78578 -15.50747 -15.17510 -14.96757 -14.70990 -14.32887 -14.13406 -13.90778 -13.63737 -13.53450 -13.41744 -13.25998 -13.12643 -13.01099 -12.86563 -12.76815 -12.37831 -12.29481 -12.04843 -11.87787 -11.40087 -10.87955 -10.56479 -10.50185 -10.33612 -10.06023 -9.03451 -8.66030 -8.30846 -6.38279 -0.40770 0.32983 0.47239 0.55193 0.74271 1.25632 1.30944 1.40418 1.60492 1.97721 2.10424 2.34067 2.71316 2.82769 3.12590 3.16457 3.38500 3.90428 3.92438 3.95665 4.03385 4.23843 4.33072 4.45561 4.48001 4.58700 4.62049 4.66554 4.75848 4.79073 4.94278 5.01800 5.09792 5.15557 5.24916 5.35462 5.50641 5.68873 5.84694 5.96423 6.10018 6.43548 6.84273 6.90797 7.11717 7.57738 8.50144 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.005416 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.277567 B = 5168.624683 C = 6937.447907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.030 3.970 3 N -0.513 5.513 4 C 0.097 3.903 5 C -0.048 4.048 6 C -0.103 4.103 7 C -0.113 4.113 8 C 0.050 3.950 9 C 0.107 3.893 10 C -0.064 4.064 11 N -0.393 5.393 12 C -0.374 4.374 13 H 0.075 0.925 14 C 0.024 3.976 15 N -0.862 5.862 16 Si 0.974 3.026 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.267 1.267 20 C 0.425 3.575 21 O -0.588 6.588 22 C 0.083 3.917 23 H 0.157 0.843 24 C -0.160 4.160 25 O -0.308 6.308 26 C -0.253 4.253 27 S 0.181 5.819 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.107 0.893 34 H 0.274 0.726 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -17.226 -5.688 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.249 4.249 3 N -0.229 5.229 4 C -0.032 4.032 5 C -0.052 4.052 6 C -0.122 4.122 7 C -0.132 4.132 8 C 0.004 3.996 9 C 0.011 3.989 10 C -0.086 4.086 11 N -0.103 5.103 12 C -0.501 4.501 13 H 0.093 0.907 14 C -0.183 4.183 15 N -0.494 5.494 16 Si 0.796 3.204 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.191 1.191 20 C 0.216 3.784 21 O -0.472 6.472 22 C 0.024 3.976 23 H 0.174 0.826 24 C -0.218 4.218 25 O -0.223 6.223 26 C -0.392 4.392 27 S 0.436 5.564 28 H 0.131 0.869 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.187 0.813 32 H 0.186 0.814 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.536 -17.245 -5.386 18.131 hybrid contribution -0.813 1.750 0.486 1.990 sum 0.723 -15.494 -4.900 16.267 Atomic orbital electron populations 1.20599 0.83538 1.05323 1.04355 1.27533 1.03259 0.91396 1.02677 1.66123 1.05580 1.33770 1.17390 1.18801 0.88516 0.92786 1.03122 1.18098 0.92782 0.89784 1.04524 1.21043 0.89656 1.00125 1.01411 1.20544 1.01723 0.87347 1.03569 1.19065 0.85671 0.89562 1.05309 1.18463 0.92506 0.85615 1.02353 1.20527 0.98888 0.90605 0.98584 1.41436 1.09847 1.03154 1.55861 1.19347 0.87335 1.27549 1.15844 0.90738 1.26123 1.04446 0.95026 0.92706 1.70078 1.37628 1.30673 1.11046 0.85224 0.77504 0.79453 0.78199 1.18215 1.19607 1.19114 1.22253 0.89013 0.85731 0.81364 1.90512 1.80051 1.20161 1.56431 1.22921 0.91412 0.87978 0.95310 0.82556 1.22249 1.05153 1.02939 0.91433 1.86117 1.41928 1.22059 1.72203 1.27317 1.05272 0.94606 1.11996 1.83315 0.95429 1.10181 1.67492 0.86889 0.90069 0.89410 0.81333 0.81402 0.87469 0.91683 0.93411 0.90017 0.86912 0.77347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 10.47 71.24 0.75 -0.83 16 2 C 0.03 0.82 7.36 88.55 0.65 1.47 16 3 N -0.51 -19.24 9.91 -180.56 -1.79 -21.03 16 4 C 0.10 3.42 6.64 40.95 0.27 3.70 16 5 C -0.05 -1.92 5.88 -20.03 -0.12 -2.03 16 6 C -0.10 -3.21 9.48 22.52 0.21 -2.99 16 7 C -0.11 -3.74 9.98 22.29 0.22 -3.52 16 8 C 0.05 2.15 5.85 22.67 0.13 2.28 16 9 C 0.11 5.40 5.47 38.23 0.21 5.61 16 10 C -0.06 -3.13 7.28 22.58 0.16 -2.96 16 11 N -0.39 -22.22 2.75 -458.17 -1.26 -23.48 16 12 C -0.37 -22.49 8.32 84.02 0.70 -21.79 16 13 H 0.07 4.65 7.85 -2.91 -0.02 4.63 16 14 C 0.02 1.36 3.50 84.90 0.30 1.66 16 15 N -0.86 -49.94 11.46 21.65 0.25 -49.69 16 16 Si 0.97 44.94 29.58 68.60 2.03 46.97 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C 0.43 22.58 6.87 87.63 0.60 23.18 16 21 O -0.59 -34.72 17.09 -3.05 -0.05 -34.77 16 22 C 0.08 3.29 3.81 29.86 0.11 3.40 16 23 H 0.16 5.35 8.14 -2.39 -0.02 5.33 16 24 C -0.16 -5.01 9.30 71.98 0.67 -4.34 16 25 O -0.31 -12.53 10.18 -93.47 -0.95 -13.48 16 26 C -0.25 -6.30 10.62 67.03 0.71 -5.59 16 27 S 0.18 3.66 23.15 -56.49 -1.31 2.35 16 28 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 29 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.17 3.51 6.64 -2.91 -0.02 3.49 16 32 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 33 H 0.11 5.93 5.74 -2.91 -0.02 5.91 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.05 1.64 7.80 -2.39 -0.02 1.62 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.21 3.57 6.88 -2.91 -0.02 3.55 16 Total: -1.00 -80.16 336.39 3.62 -76.54 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.11 Total: 19.36 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.59 Total: -2.76 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -2.80 Total: -94.20 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -1.00 Total: -48.25 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.31 Total: 2.35 kcal Total: -80.16 3.62 -76.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020163514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.383 kcal (2) G-P(sol) polarization free energy of solvation -80.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds