Wall clock time and date at job start Tue Mar 31 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28819 * 124.75891 * 2 1 4 4 C 1.32509 * 117.12251 * 180.21108 * 3 2 1 5 5 C 1.48369 * 122.96228 * 179.75143 * 4 3 2 6 6 C 1.39449 * 120.02313 * 179.68223 * 5 4 3 7 7 C 1.38072 * 120.15296 * 180.02562 * 6 5 4 8 8 C 1.38514 * 120.04776 * 359.94791 * 7 6 5 9 9 C 1.39618 * 120.05663 * 0.08641 * 8 7 6 10 10 C 1.38455 * 120.07223 * 359.92507 * 9 8 7 11 11 N 1.39964 * 119.28670 * 179.89955 * 9 8 7 12 12 C 1.37105 * 120.49142 * 195.52383 * 11 9 8 13 13 H 1.07999 * 120.00009 * 221.97425 * 12 11 9 14 14 C 1.38870 * 119.99727 * 41.96678 * 12 11 9 15 15 N 1.31438 * 119.99869 * 15.52110 * 14 12 11 16 16 Si 1.86800 * 120.00029 * 195.51475 * 14 12 11 17 17 H 1.48501 * 109.47077 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46887 * 120.00451 * 16 14 12 19 19 H 1.48503 * 109.47425 * 240.00371 * 16 14 12 20 20 C 1.35075 * 119.02262 * 15.50651 * 11 9 8 21 21 O 1.21284 * 120.12666 * 181.64116 * 20 11 9 22 22 C 1.50747 * 119.74170 * 1.63642 * 20 11 9 23 23 H 1.09001 * 109.44795 * 88.71947 * 22 20 11 24 24 C 1.53001 * 109.42015 * 208.63679 * 22 20 11 25 25 O 1.35997 * 120.54531 * 180.02562 * 8 7 6 26 26 C 1.34822 * 114.07844 * 359.47769 * 4 3 2 27 27 S 1.70914 * 124.75872 * 179.67309 * 2 1 3 28 28 H 1.08997 * 109.47213 * 180.30504 * 1 2 3 29 29 H 1.08997 * 109.47254 * 300.30638 * 1 2 3 30 30 H 1.09005 * 109.46856 * 60.30280 * 1 2 3 31 31 H 1.07996 * 119.92405 * 0.02562 * 6 5 4 32 32 H 1.08006 * 119.97161 * 180.02562 * 7 6 5 33 33 H 1.08000 * 120.14273 * 180.02562 * 10 9 8 34 34 H 0.97000 * 119.99785 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47081 * 180.02562 * 24 22 20 36 36 H 1.08997 * 109.47190 * 300.07658 * 24 22 20 37 37 H 1.09001 * 109.46950 * 60.08065 * 24 22 20 38 38 H 1.08004 * 126.05728 * 180.24555 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2414 1.0583 0.0000 4 6 3.5547 0.8822 -0.0043 5 6 4.5202 2.0088 -0.0103 6 6 5.8910 1.7529 -0.0080 7 6 6.7919 2.7992 -0.0130 8 6 6.3358 4.1071 -0.0214 9 6 4.9645 4.3695 -0.0230 10 6 4.0579 3.3230 -0.0178 11 7 4.5215 5.6971 -0.0295 12 6 3.2213 5.9982 0.2850 13 1 2.6835 6.7364 -0.2913 14 6 2.5961 5.3537 1.3443 15 7 3.3124 4.6949 2.2277 16 14 0.7371 5.4232 1.5138 17 1 0.1679 6.2215 0.3985 18 1 0.1841 4.0457 1.4687 19 1 0.3814 6.0572 2.8087 20 6 5.3937 6.6775 -0.3496 21 8 5.0391 7.8372 -0.3326 22 6 6.8096 6.3246 -0.7281 23 1 6.8643 6.1457 -1.8019 24 6 7.7390 7.4817 -0.3565 25 8 7.2142 5.1454 -0.0269 26 6 3.9364 -0.4108 0.0030 27 16 2.4814 -1.4041 0.0080 28 1 -0.3633 -1.0276 0.0055 29 1 -0.3633 0.5186 0.8872 30 1 -0.3633 0.5092 -0.8927 31 1 6.2489 0.7340 -0.0023 32 1 7.8530 2.5977 -0.0116 33 1 2.9969 3.5247 -0.0195 34 1 2.8757 4.2444 2.9675 35 1 8.7630 7.2276 -0.6303 36 1 7.4317 8.3806 -0.8910 37 1 7.6846 7.6610 0.7173 38 1 4.9538 -0.7734 0.0049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020163515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:21 Heat of formation + Delta-G solvation = 11.250724 kcal Electronic energy + Delta-G solvation = -25956.495789 eV Core-core repulsion = 22277.498568 eV Total energy + Delta-G solvation = -3678.997222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63117 -39.63001 -37.66169 -36.88812 -35.01648 -32.53823 -31.91419 -31.22002 -29.45864 -28.94131 -27.41730 -25.94692 -24.03357 -23.15937 -21.88043 -21.70152 -19.82106 -18.77461 -18.36338 -17.54142 -17.10528 -16.24645 -15.83033 -15.11750 -15.03351 -14.82728 -14.21886 -14.02629 -13.80127 -13.71774 -13.39639 -13.24478 -13.00204 -12.77797 -12.54467 -12.38451 -12.17692 -11.96409 -11.78681 -11.61455 -11.52512 -11.17552 -11.05355 -10.86847 -10.58091 -10.45540 -10.21839 -9.53745 -9.40094 -9.25365 -8.97791 -8.90472 -8.59555 -7.45190 -6.92034 -6.37988 -4.27757 0.75842 1.49649 1.79471 1.84879 2.13041 3.06534 3.14272 3.21215 3.25837 3.57870 3.77462 4.07844 4.17780 4.43852 4.58213 4.94890 5.03584 5.09858 5.30212 5.32587 5.40907 5.44465 5.46708 5.50271 5.68067 5.76348 5.86343 5.90039 6.08171 6.18519 6.23441 6.35896 6.45003 6.65054 6.83851 7.11677 7.19606 7.39700 7.43882 7.73657 8.02482 8.09187 8.21748 8.83516 9.05252 9.53394 10.54361 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.005137 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.746192 B = 5448.860214 C = 7259.525145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.054 3.946 3 N -0.457 5.457 4 C 0.141 3.859 5 C -0.044 4.044 6 C -0.121 4.121 7 C -0.124 4.124 8 C 0.066 3.934 9 C 0.140 3.860 10 C -0.041 4.041 11 N -0.378 5.378 12 C -0.343 4.343 13 H 0.099 0.901 14 C 0.052 3.948 15 N -0.838 5.838 16 Si 0.918 3.082 17 H -0.265 1.265 18 H -0.269 1.269 19 H -0.279 1.279 20 C 0.445 3.555 21 O -0.535 6.535 22 C 0.076 3.924 23 H 0.083 0.917 24 C -0.127 4.127 25 O -0.310 6.310 26 C -0.264 4.264 27 S 0.089 5.911 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.273 0.727 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 -12.363 -4.700 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.225 4.225 3 N -0.171 5.171 4 C 0.012 3.988 5 C -0.047 4.047 6 C -0.142 4.142 7 C -0.144 4.144 8 C 0.019 3.981 9 C 0.042 3.958 10 C -0.063 4.063 11 N -0.088 5.088 12 C -0.469 4.469 13 H 0.117 0.883 14 C -0.158 4.158 15 N -0.470 5.470 16 Si 0.742 3.258 17 H -0.189 1.189 18 H -0.194 1.194 19 H -0.205 1.205 20 C 0.234 3.766 21 O -0.415 6.415 22 C 0.017 3.983 23 H 0.100 0.900 24 C -0.184 4.184 25 O -0.225 6.225 26 C -0.403 4.403 27 S 0.343 5.657 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.419 -12.314 -4.393 13.081 hybrid contribution -0.397 0.617 0.403 0.837 sum 0.022 -11.697 -3.991 12.359 Atomic orbital electron populations 1.20430 0.85437 1.03101 1.04673 1.26964 1.01670 0.90592 1.03321 1.66144 1.04624 1.31041 1.15262 1.18857 0.88558 0.92007 0.99397 1.17714 0.90692 0.90397 1.05930 1.20490 0.91191 0.97872 1.04631 1.19997 0.99479 0.88913 1.05967 1.18725 0.86680 0.87969 1.04737 1.18175 0.90825 0.86737 1.00075 1.20679 1.00545 0.88772 0.96304 1.41288 1.10165 1.01602 1.55713 1.19426 0.85749 1.26784 1.14973 0.88300 1.25468 1.00680 0.96018 0.93596 1.70005 1.36195 1.30086 1.10764 0.86002 0.82323 0.78796 0.78636 1.18859 1.19449 1.20465 1.21264 0.86817 0.86437 0.82100 1.90557 1.78535 1.18539 1.53839 1.22542 0.93369 0.85755 0.96676 0.89975 1.21586 0.97799 0.95491 1.03520 1.86094 1.42328 1.21853 1.72230 1.26838 1.02497 0.95357 1.15569 1.83662 0.98457 1.13545 1.70075 0.90443 0.89429 0.89377 0.86332 0.85537 0.83973 0.91619 0.91408 0.89687 0.91429 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.47 36.00 0.38 -0.45 16 2 C 0.05 0.80 7.36 -13.54 -0.10 0.70 16 3 N -0.46 -8.59 9.91 -8.42 -0.08 -8.68 16 4 C 0.14 2.59 6.64 -84.62 -0.56 2.03 16 5 C -0.04 -0.88 5.88 -104.87 -0.62 -1.50 16 6 C -0.12 -2.11 9.48 -39.19 -0.37 -2.48 16 7 C -0.12 -2.27 9.98 -39.54 -0.39 -2.66 16 8 C 0.07 1.43 6.45 -38.96 -0.25 1.18 16 9 C 0.14 3.44 5.47 -83.55 -0.46 2.98 16 10 C -0.04 -0.96 7.28 -39.10 -0.28 -1.24 16 11 N -0.38 -10.11 2.75 -58.81 -0.16 -10.27 16 12 C -0.34 -9.57 8.32 -14.96 -0.12 -9.70 16 13 H 0.10 2.81 7.85 -52.49 -0.41 2.39 16 14 C 0.05 1.38 3.50 -17.49 -0.06 1.32 16 15 N -0.84 -23.17 11.46 55.49 0.64 -22.54 16 16 Si 0.92 20.76 29.58 -169.99 -5.03 15.73 16 17 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.44 11.20 7.33 -10.83 -0.08 11.12 16 21 O -0.54 -14.57 16.15 5.55 0.09 -14.48 16 22 C 0.08 1.53 3.68 -27.86 -0.10 1.42 16 23 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 24 C -0.13 -2.10 9.14 37.16 0.34 -1.76 16 25 O -0.31 -6.51 10.09 -19.73 -0.20 -6.70 16 26 C -0.26 -3.82 10.62 29.52 0.31 -3.51 16 27 S 0.09 1.08 23.15 -107.50 -2.49 -1.41 16 28 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.12 1.61 6.64 -52.49 -0.35 1.27 16 32 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 33 H 0.14 3.65 5.74 -52.49 -0.30 3.35 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.34 7.86 -51.93 -0.41 0.93 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.18 2.06 6.88 -52.48 -0.36 1.70 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -32.77 336.18 -8.47 -41.24 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.92 Total: 4.59 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.37 Total: -2.55 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.39 Total: -41.48 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.11 Total: -21.19 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.77 -8.47 -41.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020163515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.486 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds