Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28819 * 124.75891 * 2 1 4 4 C 1.32509 * 117.12251 * 180.21108 * 3 2 1 5 5 C 1.48369 * 122.96228 * 179.75143 * 4 3 2 6 6 C 1.39449 * 120.02313 * 179.68223 * 5 4 3 7 7 C 1.38072 * 120.15296 * 180.02562 * 6 5 4 8 8 C 1.38514 * 120.04776 * 359.94791 * 7 6 5 9 9 C 1.39618 * 120.05663 * 0.08641 * 8 7 6 10 10 C 1.38455 * 120.07223 * 359.92507 * 9 8 7 11 11 N 1.39964 * 119.28670 * 179.89955 * 9 8 7 12 12 C 1.37105 * 120.49142 * 195.52383 * 11 9 8 13 13 H 1.07999 * 120.00009 * 221.97425 * 12 11 9 14 14 C 1.38870 * 119.99727 * 41.96678 * 12 11 9 15 15 N 1.31438 * 119.99869 * 15.52110 * 14 12 11 16 16 Si 1.86800 * 120.00029 * 195.51475 * 14 12 11 17 17 H 1.48501 * 109.47077 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46887 * 120.00451 * 16 14 12 19 19 H 1.48503 * 109.47425 * 240.00371 * 16 14 12 20 20 C 1.35075 * 119.02262 * 15.50651 * 11 9 8 21 21 O 1.21284 * 120.12666 * 181.64116 * 20 11 9 22 22 C 1.50747 * 119.74170 * 1.63642 * 20 11 9 23 23 H 1.09001 * 109.44795 * 88.71947 * 22 20 11 24 24 C 1.53001 * 109.42015 * 208.63679 * 22 20 11 25 25 O 1.35997 * 120.54531 * 180.02562 * 8 7 6 26 26 C 1.34822 * 114.07844 * 359.47769 * 4 3 2 27 27 S 1.70914 * 124.75872 * 179.67309 * 2 1 3 28 28 H 1.08997 * 109.47213 * 180.30504 * 1 2 3 29 29 H 1.08997 * 109.47254 * 300.30638 * 1 2 3 30 30 H 1.09005 * 109.46856 * 60.30280 * 1 2 3 31 31 H 1.07996 * 119.92405 * 0.02562 * 6 5 4 32 32 H 1.08006 * 119.97161 * 180.02562 * 7 6 5 33 33 H 1.08000 * 120.14273 * 180.02562 * 10 9 8 34 34 H 0.97000 * 119.99785 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47081 * 180.02562 * 24 22 20 36 36 H 1.08997 * 109.47190 * 300.07658 * 24 22 20 37 37 H 1.09001 * 109.46950 * 60.08065 * 24 22 20 38 38 H 1.08004 * 126.05728 * 180.24555 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2414 1.0583 0.0000 4 6 3.5547 0.8822 -0.0043 5 6 4.5202 2.0088 -0.0103 6 6 5.8910 1.7529 -0.0080 7 6 6.7919 2.7992 -0.0130 8 6 6.3358 4.1071 -0.0214 9 6 4.9645 4.3695 -0.0230 10 6 4.0579 3.3230 -0.0178 11 7 4.5215 5.6971 -0.0295 12 6 3.2213 5.9982 0.2850 13 1 2.6835 6.7364 -0.2913 14 6 2.5961 5.3537 1.3443 15 7 3.3124 4.6949 2.2277 16 14 0.7371 5.4232 1.5138 17 1 0.1679 6.2215 0.3985 18 1 0.1841 4.0457 1.4687 19 1 0.3814 6.0572 2.8087 20 6 5.3937 6.6775 -0.3496 21 8 5.0391 7.8372 -0.3326 22 6 6.8096 6.3246 -0.7281 23 1 6.8643 6.1457 -1.8019 24 6 7.7390 7.4817 -0.3565 25 8 7.2142 5.1454 -0.0269 26 6 3.9364 -0.4108 0.0030 27 16 2.4814 -1.4041 0.0080 28 1 -0.3633 -1.0276 0.0055 29 1 -0.3633 0.5186 0.8872 30 1 -0.3633 0.5092 -0.8927 31 1 6.2489 0.7340 -0.0023 32 1 7.8530 2.5977 -0.0116 33 1 2.9969 3.5247 -0.0195 34 1 2.8757 4.2444 2.9675 35 1 8.7630 7.2276 -0.6303 36 1 7.4317 8.3806 -0.8910 37 1 7.6846 7.6610 0.7173 38 1 4.9538 -0.7734 0.0049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020163515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -10.173905 kcal Electronic energy + Delta-G solvation = -25957.424831 eV Core-core repulsion = 22277.498568 eV Total energy + Delta-G solvation = -3679.926263 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.31627 -40.88663 -39.39584 -38.50855 -36.80767 -34.08017 -33.61005 -32.61817 -31.04082 -30.26854 -28.77660 -27.78356 -25.32109 -24.85973 -23.40910 -23.21456 -21.09888 -20.48279 -19.94529 -19.22654 -18.49241 -17.90041 -17.49488 -16.92290 -16.49957 -15.99234 -15.88258 -15.60464 -15.38711 -15.25929 -15.02781 -14.70356 -14.34800 -14.07483 -13.99157 -13.69568 -13.57258 -13.37276 -13.12930 -13.03491 -12.97830 -12.83997 -12.80439 -12.39643 -12.27005 -12.05052 -11.87390 -11.41746 -10.88108 -10.58563 -10.50831 -10.34007 -10.06529 -9.04087 -8.67013 -8.31681 -6.38162 -0.41545 0.31455 0.46826 0.54255 0.73808 1.24368 1.30098 1.42553 1.58542 1.96360 2.09503 2.30855 2.68437 2.82105 3.12310 3.16807 3.39098 3.91332 3.91915 3.94044 4.00000 4.24067 4.32570 4.47238 4.47369 4.59391 4.61725 4.74546 4.77546 4.82966 4.93812 5.08355 5.11813 5.15897 5.24466 5.34264 5.49396 5.67575 5.83978 5.95780 6.10148 6.42172 6.84290 6.90355 7.10970 7.57581 8.50292 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.005137 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.746192 B = 5448.860214 C = 7259.525145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.030 3.970 3 N -0.513 5.513 4 C 0.097 3.903 5 C -0.048 4.048 6 C -0.102 4.102 7 C -0.111 4.111 8 C 0.046 3.954 9 C 0.104 3.896 10 C -0.063 4.063 11 N -0.398 5.398 12 C -0.373 4.373 13 H 0.075 0.925 14 C 0.023 3.977 15 N -0.862 5.862 16 Si 0.975 3.025 17 H -0.264 1.264 18 H -0.261 1.261 19 H -0.271 1.271 20 C 0.422 3.578 21 O -0.578 6.578 22 C 0.082 3.918 23 H 0.109 0.891 24 C -0.119 4.119 25 O -0.309 6.309 26 C -0.253 4.253 27 S 0.182 5.818 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.108 0.892 34 H 0.273 0.727 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 -16.527 -4.947 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.249 4.249 3 N -0.229 5.229 4 C -0.032 4.032 5 C -0.051 4.051 6 C -0.122 4.122 7 C -0.130 4.130 8 C -0.001 4.001 9 C 0.008 3.992 10 C -0.085 4.085 11 N -0.108 5.108 12 C -0.499 4.499 13 H 0.093 0.907 14 C -0.184 4.184 15 N -0.495 5.495 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.185 1.185 19 H -0.197 1.197 20 C 0.213 3.787 21 O -0.461 6.461 22 C 0.022 3.978 23 H 0.126 0.874 24 C -0.176 4.176 25 O -0.224 6.224 26 C -0.392 4.392 27 S 0.437 5.563 28 H 0.131 0.869 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.188 0.812 32 H 0.187 0.813 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.854 -16.533 -4.648 17.273 hybrid contribution -0.862 1.631 0.434 1.895 sum 0.992 -14.902 -4.214 15.518 Atomic orbital electron populations 1.20597 0.83538 1.05323 1.04343 1.27530 1.03263 0.91405 1.02685 1.66112 1.05580 1.33790 1.17384 1.18793 0.88509 0.92771 1.03170 1.18110 0.92808 0.89796 1.04417 1.21051 0.89638 1.00124 1.01397 1.20539 1.01761 0.87248 1.03468 1.19122 0.85698 0.89580 1.05698 1.18504 0.92549 0.85752 1.02408 1.20522 0.98878 0.90567 0.98556 1.41495 1.09972 1.03152 1.56174 1.19374 0.87261 1.27500 1.15787 0.90679 1.26132 1.04462 0.95043 0.92721 1.70088 1.37578 1.30720 1.11085 0.85171 0.77463 0.79077 0.78639 1.18762 1.18523 1.19663 1.22290 0.88858 0.85898 0.81628 1.90496 1.79758 1.19840 1.55978 1.22714 0.90457 0.86589 0.98000 0.87360 1.21627 0.99192 0.94331 1.02431 1.86078 1.41747 1.21875 1.72747 1.27323 1.05298 0.94599 1.11943 1.83310 0.95399 1.10154 1.67464 0.86886 0.90173 0.89325 0.81239 0.81347 0.87408 0.91706 0.87271 0.89238 0.93197 0.77319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.47 71.24 0.75 -0.83 16 2 C 0.03 0.82 7.36 88.55 0.65 1.47 16 3 N -0.51 -19.32 9.91 -180.56 -1.79 -21.11 16 4 C 0.10 3.43 6.64 40.96 0.27 3.70 16 5 C -0.05 -1.91 5.88 -20.03 -0.12 -2.02 16 6 C -0.10 -3.22 9.48 22.52 0.21 -3.01 16 7 C -0.11 -3.73 9.98 22.30 0.22 -3.51 16 8 C 0.05 1.97 6.45 22.67 0.15 2.12 16 9 C 0.10 5.33 5.47 38.23 0.21 5.54 16 10 C -0.06 -3.11 7.28 22.58 0.16 -2.94 16 11 N -0.40 -22.66 2.75 -458.19 -1.26 -23.92 16 12 C -0.37 -22.46 8.32 84.02 0.70 -21.76 16 13 H 0.08 4.69 7.85 -2.91 -0.02 4.67 16 14 C 0.02 1.32 3.50 84.90 0.30 1.62 16 15 N -0.86 -50.08 11.46 21.65 0.25 -49.83 16 16 Si 0.97 45.00 29.58 68.60 2.03 47.03 16 17 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 C 0.42 22.51 7.33 87.62 0.64 23.15 16 21 O -0.58 -33.63 16.15 -3.04 -0.05 -33.68 16 22 C 0.08 3.29 3.68 29.86 0.11 3.40 16 23 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 24 C -0.12 -3.85 9.14 71.98 0.66 -3.20 16 25 O -0.31 -12.78 10.09 -93.52 -0.94 -13.73 16 26 C -0.25 -6.32 10.62 67.04 0.71 -5.61 16 27 S 0.18 3.69 23.15 -56.49 -1.31 2.39 16 28 H 0.11 1.39 8.12 -2.39 -0.02 1.37 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.17 3.55 6.64 -2.91 -0.02 3.53 16 32 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.11 5.98 5.74 -2.91 -0.02 5.96 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.09 2.82 7.86 -2.39 -0.02 2.80 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.21 3.59 6.88 -2.91 -0.02 3.57 16 Total: -1.00 -79.93 336.18 3.67 -76.26 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 1.11 Total: 18.45 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.63 Total: -1.87 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -2.80 Total: -94.85 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.99 Total: -47.40 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.31 Total: 2.39 kcal Total: -79.93 3.67 -76.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020163515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.090 kcal (2) G-P(sol) polarization free energy of solvation -79.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds