Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47218 * 239.46505 * 3 2 1 5 5 C 1.53002 * 109.47450 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46637 * 305.00255 * 5 4 3 7 7 C 1.53000 * 109.47009 * 185.00037 * 5 4 3 8 8 C 1.47199 * 109.46746 * 172.72073 * 7 5 4 9 9 N 7.21621 * 156.37406 * 248.14924 * 2 1 3 10 10 N 1.46898 * 109.47151 * 65.00124 * 5 4 3 11 11 C 1.46956 * 111.00101 * 195.48055 * 10 5 4 12 12 C 1.53044 * 109.36863 * 176.81153 * 11 10 5 13 13 N 1.46964 * 109.36504 * 58.39505 * 12 11 10 14 14 C 1.46895 * 110.99835 * 176.81346 * 13 12 11 15 15 H 1.09008 * 109.46905 * 168.12234 * 14 13 12 16 16 C 1.52999 * 109.47291 * 48.12467 * 14 13 12 17 17 C 1.47196 * 109.47354 * 67.27548 * 16 14 13 18 18 N 6.21001 * 119.27658 * 135.82558 * 2 1 3 19 19 C 1.52995 * 109.47343 * 288.11851 * 14 13 12 20 20 C 1.50702 * 109.47300 * 295.93651 * 19 14 13 21 21 H 1.07992 * 120.00151 * 5.00471 * 20 19 14 22 22 C 1.37877 * 119.99714 * 185.00766 * 20 19 14 23 23 N 1.31519 * 119.99525 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00381 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47107 * 90.00340 * 24 22 20 26 26 H 1.48507 * 109.47119 * 210.00185 * 24 22 20 27 27 H 1.48494 * 109.47072 * 329.99926 * 24 22 20 28 28 C 1.46958 * 110.87784 * 300.68474 * 13 12 11 29 29 C 1.46954 * 111.00213 * 71.67627 * 10 5 4 30 30 H 1.09002 * 109.46832 * 119.47163 * 3 2 1 31 31 H 1.08998 * 109.47609 * 359.46930 * 3 2 1 32 32 H 1.09000 * 109.46958 * 60.00113 * 4 3 2 33 33 H 1.09008 * 109.47224 * 300.00719 * 4 3 2 34 34 H 1.08992 * 109.47121 * 292.72042 * 7 5 4 35 35 H 1.09003 * 109.46955 * 52.72624 * 7 5 4 36 36 H 1.08997 * 109.48965 * 56.83745 * 11 10 5 37 37 H 1.09008 * 109.48267 * 296.77864 * 11 10 5 38 38 H 1.08999 * 109.49083 * 178.36422 * 12 11 10 39 39 H 1.09004 * 109.48905 * 298.41314 * 12 11 10 40 40 H 1.09002 * 109.47178 * 187.27679 * 16 14 13 41 41 H 1.09004 * 109.46764 * 307.27363 * 16 14 13 42 42 H 1.09006 * 109.46999 * 55.93714 * 19 14 13 43 43 H 1.09004 * 109.47187 * 175.93347 * 19 14 13 44 44 H 0.97006 * 119.99748 * 179.97438 * 23 22 20 45 45 H 1.09009 * 109.48112 * 179.28724 * 28 13 12 46 46 H 1.08997 * 109.48755 * 299.34257 * 28 13 12 47 47 H 1.09002 * 109.48621 * 63.21998 * 29 10 5 48 48 H 1.08996 * 109.50842 * 303.16771 * 29 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7338 1.2425 5 6 4.6477 0.7350 1.2422 6 1 5.0118 -0.2892 1.1619 7 6 5.1574 1.3571 2.5438 8 6 6.6190 1.2012 2.6226 9 7 7.7474 1.0764 2.6842 10 7 5.1365 1.5194 0.1004 11 6 6.5588 1.2503 -0.1532 12 6 7.0081 2.0234 -1.3952 13 7 6.7758 3.4594 -1.1859 14 6 7.2647 4.2437 -2.3277 15 1 6.8975 5.2671 -2.2494 16 6 6.7591 3.6188 -3.6295 17 6 5.2973 3.7705 -3.7114 18 7 4.1729 3.8850 -3.7747 19 6 8.7946 4.2492 -2.3251 20 6 9.2923 4.9541 -1.0895 21 1 8.5915 5.2863 -0.3381 22 6 10.6425 5.1749 -0.9186 23 7 11.0768 5.7906 0.1594 24 14 11.8549 4.5998 -2.2181 25 1 12.0579 5.6789 -3.2179 26 1 13.1522 4.2714 -1.5740 27 1 11.3188 3.3919 -2.8952 28 6 5.3535 3.7284 -0.9324 29 6 4.9043 2.9553 0.3097 30 1 2.9711 0.5064 -0.8947 31 1 2.9719 -1.0267 0.0095 32 1 2.7546 0.2281 2.1372 33 1 2.7538 1.7613 1.2329 34 1 4.9034 2.4168 2.5639 35 1 4.6923 0.8557 3.3926 36 1 6.7032 0.1825 -0.3175 37 1 7.1481 1.5692 0.7066 38 1 8.0699 1.8482 -1.5683 39 1 6.4379 1.6849 -2.2603 40 1 7.2245 4.1203 -4.4781 41 1 7.0161 2.5596 -3.6479 42 1 9.1617 3.2228 -2.3305 43 1 9.1576 4.7696 -3.2114 44 1 12.0268 5.9456 0.2798 45 1 5.2091 4.7963 -0.7681 46 1 4.7643 3.4096 -1.7921 47 1 5.4748 3.2936 1.1747 48 1 3.8426 3.1308 0.4830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023478199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = 112.997923 kcal Electronic energy + Delta-G solvation = -28938.485674 eV Core-core repulsion = 25222.825273 eV Total energy + Delta-G solvation = -3715.660401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33674 -38.47296 -36.98622 -36.21856 -35.78779 -34.14360 -32.56401 -31.59337 -30.91596 -29.98694 -28.70524 -26.52987 -25.20461 -23.74948 -23.12815 -21.24436 -19.90660 -19.10654 -18.04193 -17.49935 -17.35181 -16.75660 -16.38666 -15.94796 -15.41844 -15.29137 -14.72804 -14.62106 -14.47533 -14.16469 -13.97106 -13.84365 -13.52197 -13.30207 -12.96942 -12.88825 -12.71890 -12.61256 -12.49814 -12.34499 -12.14640 -12.13855 -12.00320 -11.89166 -11.79937 -11.49427 -11.48634 -11.25986 -11.18935 -10.96776 -10.68960 -10.57274 -10.41642 -10.23139 -9.90115 -9.72318 -9.12800 -8.48428 -8.37777 -7.66931 -5.96493 -3.92013 2.52372 2.61268 2.76809 2.83059 2.92418 2.94739 3.30975 3.39129 3.40606 3.66030 3.70763 3.95206 4.17642 4.26350 4.45451 4.48327 4.65258 4.82831 4.89082 4.94697 5.09886 5.19899 5.21119 5.25591 5.30499 5.34394 5.38193 5.38733 5.46672 5.57909 5.59523 5.64444 5.69662 5.75972 5.78011 5.98747 6.09586 6.17166 6.21654 6.23826 6.46986 6.86242 6.93606 6.96326 7.18362 7.37461 7.57920 7.59631 7.60883 7.69145 7.83850 8.63572 9.16422 9.65294 11.17294 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.003909 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.343965 B = 7161.105772 C = 8727.099480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.209 3.791 3 C -0.021 4.021 4 C -0.104 4.104 5 C 0.089 3.911 6 H 0.096 0.904 7 C -0.065 4.065 8 C 0.194 3.806 9 N -0.411 5.411 10 N -0.529 5.529 11 C 0.041 3.959 12 C 0.056 3.944 13 N -0.506 5.506 14 C 0.109 3.891 15 H 0.085 0.915 16 C -0.079 4.079 17 C 0.219 3.781 18 N -0.451 5.451 19 C -0.002 4.002 20 C -0.493 4.493 21 H 0.080 0.920 22 C 0.064 3.936 23 N -0.904 5.904 24 Si 0.872 3.128 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.267 1.267 28 C 0.040 3.960 29 C 0.051 3.949 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.260 0.740 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -11.815 0.130 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.109 4.109 3 C -0.061 4.061 4 C -0.143 4.143 5 C -0.021 4.021 6 H 0.114 0.886 7 C -0.107 4.107 8 C -0.123 4.123 9 N -0.088 5.088 10 N -0.253 5.253 11 C -0.087 4.087 12 C -0.072 4.072 13 N -0.229 5.229 14 C -0.001 4.001 15 H 0.103 0.897 16 C -0.121 4.121 17 C -0.097 4.097 18 N -0.128 5.128 19 C -0.039 4.039 20 C -0.531 4.531 21 H 0.098 0.902 22 C -0.136 4.136 23 N -0.544 5.544 24 Si 0.700 3.300 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.192 1.192 28 C -0.089 4.089 29 C -0.077 4.077 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.382 -11.768 0.211 18.584 hybrid contribution 1.338 -0.144 -0.624 1.484 sum -13.044 -11.912 -0.413 17.670 Atomic orbital electron populations 1.81235 1.13332 1.09095 1.08873 1.29429 0.95514 0.92934 0.93010 1.19252 0.80669 1.03964 1.02231 1.21547 0.93680 1.02052 0.97056 1.21750 0.94656 0.98817 0.86917 0.88556 1.20046 0.83189 1.05673 1.01774 1.28850 0.95132 0.94676 0.93665 1.81412 1.12274 1.07407 1.07719 1.62411 1.18561 1.07152 1.37218 1.22533 0.87239 0.99481 0.99480 1.22195 1.01509 0.87959 0.95558 1.62191 1.15066 1.05682 1.39944 1.21812 0.98750 0.96515 0.82988 0.89692 1.20451 0.82062 1.05400 1.04218 1.29087 0.95441 0.93175 0.91989 1.81015 1.13118 1.08974 1.09734 1.19639 0.88540 0.97542 0.98191 1.20927 0.92630 1.35599 1.03989 0.90214 1.25002 0.98301 0.95090 0.95242 1.69903 1.14456 1.42867 1.27161 0.86925 0.81234 0.79559 0.82318 1.20538 1.21697 1.19179 1.22469 0.89552 0.99686 0.97180 1.22284 1.00403 0.86825 0.98207 0.86085 0.87526 0.90170 0.90267 0.86722 0.86890 0.90823 0.91945 0.89318 0.94627 0.87005 0.87269 0.96255 0.96217 0.92984 0.90740 0.93393 0.93082 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.37 18.54 42.15 0.78 -4.59 16 2 C 0.21 1.75 15.43 -20.76 -0.32 1.43 16 3 C -0.02 -0.10 5.59 -29.52 -0.16 -0.26 16 4 C -0.10 -0.41 4.64 -26.73 -0.12 -0.53 16 5 C 0.09 0.49 1.94 -67.71 -0.13 0.36 16 6 H 0.10 0.45 7.91 -51.93 -0.41 0.04 16 7 C -0.07 -0.40 4.73 -29.52 -0.14 -0.54 16 8 C 0.19 2.20 12.36 -20.73 -0.26 1.94 16 9 N -0.41 -6.43 17.59 42.19 0.74 -5.69 16 10 N -0.53 -4.64 4.07 -226.50 -0.92 -5.56 16 11 C 0.04 0.47 4.98 -3.77 -0.02 0.45 16 12 C 0.06 0.75 4.62 -3.77 -0.02 0.73 16 13 N -0.51 -7.77 4.29 -226.49 -0.97 -8.74 16 14 C 0.11 1.73 1.90 -67.72 -0.13 1.61 16 15 H 0.08 1.44 7.90 -51.92 -0.41 1.03 16 16 C -0.08 -0.96 4.72 -29.52 -0.14 -1.10 16 17 C 0.22 2.91 12.35 -20.89 -0.26 2.65 16 18 N -0.45 -6.80 17.55 42.00 0.74 -6.06 16 19 C 0.00 -0.03 3.51 -27.88 -0.10 -0.13 16 20 C -0.49 -12.75 9.38 -34.44 -0.32 -13.07 16 21 H 0.08 2.30 7.96 -52.49 -0.42 1.88 16 22 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 23 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 24 Si 0.87 20.48 27.37 -169.99 -4.65 15.82 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.27 -5.85 6.69 56.52 0.38 -5.47 16 28 C 0.04 0.53 4.98 -3.77 -0.02 0.51 16 29 C 0.05 0.52 4.62 -3.77 -0.02 0.50 16 30 H 0.12 0.69 7.75 -51.93 -0.40 0.29 16 31 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.36 6.52 -51.92 -0.34 0.02 16 34 H 0.11 0.69 5.93 -51.93 -0.31 0.38 16 35 H 0.11 0.34 8.13 -51.93 -0.42 -0.09 16 36 H 0.07 0.75 8.02 -51.93 -0.42 0.34 16 37 H 0.06 0.91 4.34 -51.92 -0.23 0.68 16 38 H 0.09 1.35 6.52 -51.93 -0.34 1.01 16 39 H 0.04 0.43 6.14 -51.93 -0.32 0.11 16 40 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.11 1.17 5.93 -51.93 -0.31 0.86 16 42 H 0.02 0.39 5.97 -51.93 -0.31 0.08 16 43 H 0.02 0.38 7.29 -51.93 -0.38 0.00 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.07 1.06 8.02 -51.92 -0.42 0.64 16 46 H 0.05 0.64 4.34 -51.93 -0.23 0.42 16 47 H 0.05 0.60 6.15 -51.93 -0.32 0.28 16 48 H 0.08 0.65 6.49 -51.93 -0.34 0.31 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -34.90 379.55 -6.78 -41.68 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.73 Total: -2.41 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.25 Total: -3.77 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 1.14 Total: -57.04 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.65 Total: 15.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.90 -6.78 -41.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023478199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.674 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds