Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47218 * 239.46505 * 3 2 1 5 5 C 1.53002 * 109.47450 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46637 * 305.00255 * 5 4 3 7 7 C 1.53000 * 109.47009 * 185.00037 * 5 4 3 8 8 C 1.47199 * 109.46746 * 172.72073 * 7 5 4 9 9 N 7.21621 * 156.37406 * 248.14924 * 2 1 3 10 10 N 1.46898 * 109.47151 * 65.00124 * 5 4 3 11 11 C 1.46956 * 111.00101 * 195.48055 * 10 5 4 12 12 C 1.53044 * 109.36863 * 176.81153 * 11 10 5 13 13 N 1.46964 * 109.36504 * 58.39505 * 12 11 10 14 14 C 1.46895 * 110.99835 * 176.81346 * 13 12 11 15 15 H 1.09008 * 109.46905 * 168.12234 * 14 13 12 16 16 C 1.52999 * 109.47291 * 48.12467 * 14 13 12 17 17 C 1.47196 * 109.47354 * 67.27548 * 16 14 13 18 18 N 6.21001 * 119.27658 * 135.82558 * 2 1 3 19 19 C 1.52995 * 109.47343 * 288.11851 * 14 13 12 20 20 C 1.50702 * 109.47300 * 295.93651 * 19 14 13 21 21 H 1.07992 * 120.00151 * 5.00471 * 20 19 14 22 22 C 1.37877 * 119.99714 * 185.00766 * 20 19 14 23 23 N 1.31519 * 119.99525 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00381 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47107 * 90.00340 * 24 22 20 26 26 H 1.48507 * 109.47119 * 210.00185 * 24 22 20 27 27 H 1.48494 * 109.47072 * 329.99926 * 24 22 20 28 28 C 1.46958 * 110.87784 * 300.68474 * 13 12 11 29 29 C 1.46954 * 111.00213 * 71.67627 * 10 5 4 30 30 H 1.09002 * 109.46832 * 119.47163 * 3 2 1 31 31 H 1.08998 * 109.47609 * 359.46930 * 3 2 1 32 32 H 1.09000 * 109.46958 * 60.00113 * 4 3 2 33 33 H 1.09008 * 109.47224 * 300.00719 * 4 3 2 34 34 H 1.08992 * 109.47121 * 292.72042 * 7 5 4 35 35 H 1.09003 * 109.46955 * 52.72624 * 7 5 4 36 36 H 1.08997 * 109.48965 * 56.83745 * 11 10 5 37 37 H 1.09008 * 109.48267 * 296.77864 * 11 10 5 38 38 H 1.08999 * 109.49083 * 178.36422 * 12 11 10 39 39 H 1.09004 * 109.48905 * 298.41314 * 12 11 10 40 40 H 1.09002 * 109.47178 * 187.27679 * 16 14 13 41 41 H 1.09004 * 109.46764 * 307.27363 * 16 14 13 42 42 H 1.09006 * 109.46999 * 55.93714 * 19 14 13 43 43 H 1.09004 * 109.47187 * 175.93347 * 19 14 13 44 44 H 0.97006 * 119.99748 * 179.97438 * 23 22 20 45 45 H 1.09009 * 109.48112 * 179.28724 * 28 13 12 46 46 H 1.08997 * 109.48755 * 299.34257 * 28 13 12 47 47 H 1.09002 * 109.48621 * 63.21998 * 29 10 5 48 48 H 1.08996 * 109.50842 * 303.16771 * 29 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7338 1.2425 5 6 4.6477 0.7350 1.2422 6 1 5.0118 -0.2892 1.1619 7 6 5.1574 1.3571 2.5438 8 6 6.6190 1.2012 2.6226 9 7 7.7474 1.0764 2.6842 10 7 5.1365 1.5194 0.1004 11 6 6.5588 1.2503 -0.1532 12 6 7.0081 2.0234 -1.3952 13 7 6.7758 3.4594 -1.1859 14 6 7.2647 4.2437 -2.3277 15 1 6.8975 5.2671 -2.2494 16 6 6.7591 3.6188 -3.6295 17 6 5.2973 3.7705 -3.7114 18 7 4.1729 3.8850 -3.7747 19 6 8.7946 4.2492 -2.3251 20 6 9.2923 4.9541 -1.0895 21 1 8.5915 5.2863 -0.3381 22 6 10.6425 5.1749 -0.9186 23 7 11.0768 5.7906 0.1594 24 14 11.8549 4.5998 -2.2181 25 1 12.0579 5.6789 -3.2179 26 1 13.1522 4.2714 -1.5740 27 1 11.3188 3.3919 -2.8952 28 6 5.3535 3.7284 -0.9324 29 6 4.9043 2.9553 0.3097 30 1 2.9711 0.5064 -0.8947 31 1 2.9719 -1.0267 0.0095 32 1 2.7546 0.2281 2.1372 33 1 2.7538 1.7613 1.2329 34 1 4.9034 2.4168 2.5639 35 1 4.6923 0.8557 3.3926 36 1 6.7032 0.1825 -0.3175 37 1 7.1481 1.5692 0.7066 38 1 8.0699 1.8482 -1.5683 39 1 6.4379 1.6849 -2.2603 40 1 7.2245 4.1203 -4.4781 41 1 7.0161 2.5596 -3.6479 42 1 9.1617 3.2228 -2.3305 43 1 9.1576 4.7696 -3.2114 44 1 12.0268 5.9456 0.2798 45 1 5.2091 4.7963 -0.7681 46 1 4.7643 3.4096 -1.7921 47 1 5.4748 3.2936 1.1747 48 1 3.8426 3.1308 0.4830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023478199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = 87.834496 kcal Electronic energy + Delta-G solvation = -28939.576842 eV Core-core repulsion = 25222.825273 eV Total energy + Delta-G solvation = -3716.751569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21496 -39.41600 -37.70862 -37.25862 -36.80668 -35.25720 -34.19299 -32.52902 -31.80475 -30.92076 -30.22447 -27.35267 -25.98637 -25.06102 -24.36403 -22.12452 -20.96713 -20.15163 -18.99129 -18.71036 -18.06438 -17.96619 -17.40701 -16.92234 -16.35821 -16.16123 -15.95295 -15.63523 -15.42538 -15.32454 -14.96828 -14.69681 -14.51781 -14.39732 -14.25897 -13.82216 -13.75953 -13.61993 -13.50245 -13.44768 -13.20652 -13.17101 -13.04996 -12.86022 -12.75603 -12.61198 -12.31737 -12.17889 -12.11644 -11.96000 -11.75741 -11.61823 -11.51568 -11.39886 -11.32238 -11.29615 -10.94888 -10.58772 -9.17434 -8.77637 -8.09283 -6.07928 1.44847 1.47736 1.57027 1.84576 1.84683 1.90012 1.98101 1.99473 1.99863 2.49923 2.97922 3.06349 3.11039 3.14657 3.31569 3.35903 3.92727 4.04349 4.14401 4.17047 4.25719 4.36429 4.41582 4.43869 4.54345 4.58343 4.61430 4.63601 4.72277 4.75829 4.83870 4.93771 4.96612 4.98071 5.01757 5.06422 5.10801 5.15695 5.29930 5.32718 5.39988 5.48460 5.62351 5.82568 6.10418 6.19115 6.41304 6.48624 6.57416 6.67174 6.77210 6.78923 7.02651 7.52788 9.08393 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.003909 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.343965 B = 7161.105772 C = 8727.099480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.239 3.761 3 C -0.017 4.017 4 C -0.096 4.096 5 C 0.093 3.907 6 H 0.116 0.884 7 C -0.067 4.067 8 C 0.225 3.775 9 N -0.498 5.498 10 N -0.519 5.519 11 C 0.044 3.956 12 C 0.056 3.944 13 N -0.535 5.535 14 C 0.114 3.886 15 H 0.065 0.935 16 C -0.068 4.068 17 C 0.237 3.763 18 N -0.480 5.480 19 C 0.000 4.000 20 C -0.482 4.482 21 H 0.032 0.968 22 C -0.008 4.008 23 N -0.965 5.965 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.304 1.304 27 H -0.234 1.234 28 C 0.043 3.957 29 C 0.056 3.944 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.158 0.842 36 H 0.092 0.908 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.256 0.744 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 -14.305 -1.584 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.077 4.077 3 C -0.057 4.057 4 C -0.135 4.135 5 C -0.017 4.017 6 H 0.134 0.866 7 C -0.108 4.108 8 C -0.091 4.091 9 N -0.177 5.177 10 N -0.243 5.243 11 C -0.084 4.084 12 C -0.072 4.072 13 N -0.259 5.259 14 C 0.004 3.996 15 H 0.084 0.916 16 C -0.109 4.109 17 C -0.078 4.078 18 N -0.158 5.158 19 C -0.037 4.037 20 C -0.520 4.520 21 H 0.050 0.950 22 C -0.202 4.202 23 N -0.608 5.608 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.231 1.231 27 H -0.156 1.156 28 C -0.086 4.086 29 C -0.072 4.072 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.136 0.864 35 H 0.175 0.825 36 H 0.111 0.889 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.806 -14.275 -1.526 21.352 hybrid contribution 1.702 0.690 -0.002 1.837 sum -14.104 -13.585 -1.528 19.641 Atomic orbital electron populations 1.81274 1.15601 1.11604 1.11200 1.30053 0.95980 0.90773 0.90928 1.19477 0.78019 1.05885 1.02284 1.21517 0.91812 1.02277 0.97931 1.21894 0.95692 0.99005 0.85065 0.86586 1.20454 0.79826 1.06583 1.03893 1.29807 0.96020 0.92173 0.91110 1.81429 1.15099 1.10371 1.10759 1.62420 1.16489 1.06325 1.39067 1.22427 0.88470 1.00066 0.97445 1.22190 1.00624 0.86977 0.97368 1.62097 1.16571 1.06919 1.40306 1.21480 0.96160 0.96421 0.85588 0.91642 1.20356 0.81252 1.06661 1.02628 1.29136 0.95388 0.92218 0.91072 1.81041 1.14060 1.10031 1.10689 1.19574 0.91531 0.97043 0.95571 1.21253 0.91692 1.34257 1.04832 0.94963 1.25983 1.00854 0.95737 0.97653 1.70111 1.14554 1.45898 1.30223 0.85802 0.77718 0.80491 0.79419 1.19379 1.23073 1.15646 1.22430 0.88382 0.99038 0.98702 1.22229 1.01485 0.87572 0.95938 0.86491 0.84474 0.87344 0.90600 0.86383 0.82495 0.88933 0.95051 0.91435 0.92508 0.84394 0.85054 0.95316 0.94578 0.93484 0.92857 0.93034 0.94869 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.73 18.54 20.01 0.37 -11.36 16 2 C 0.24 3.35 15.43 89.44 1.38 4.73 16 3 C -0.02 -0.08 5.59 28.79 0.16 0.08 16 4 C -0.10 -0.30 4.64 30.60 0.14 -0.15 16 5 C 0.09 0.65 1.94 44.92 0.09 0.74 16 6 H 0.12 0.49 7.91 -2.39 -0.02 0.47 16 7 C -0.07 -0.60 4.73 28.79 0.14 -0.46 16 8 C 0.22 4.91 12.36 89.43 1.11 6.02 16 9 N -0.50 -16.05 17.59 20.02 0.35 -15.70 16 10 N -0.52 -7.62 4.07 -870.50 -3.55 -11.16 16 11 C 0.04 0.96 4.98 86.31 0.43 1.39 16 12 C 0.06 1.42 4.62 86.31 0.40 1.82 16 13 N -0.53 -16.32 4.29 -870.48 -3.73 -20.05 16 14 C 0.11 3.52 1.90 44.91 0.09 3.60 16 15 H 0.07 2.25 7.90 -2.38 -0.02 2.23 16 16 C -0.07 -1.43 4.72 28.79 0.14 -1.29 16 17 C 0.24 5.75 12.35 89.49 1.11 6.85 16 18 N -0.48 -13.55 17.55 19.96 0.35 -13.20 16 19 C 0.00 0.02 3.51 29.85 0.10 0.12 16 20 C -0.48 -25.70 9.38 25.60 0.24 -25.46 16 21 H 0.03 1.97 7.96 -2.91 -0.02 1.95 16 22 C -0.01 -0.47 5.47 84.65 0.46 0.00 16 23 N -0.96 -60.91 13.96 21.45 0.30 -60.62 16 24 Si 0.94 42.26 27.37 68.60 1.88 44.14 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.23 -9.14 6.69 99.48 0.67 -8.47 16 28 C 0.04 1.11 4.98 86.31 0.43 1.54 16 29 C 0.06 1.06 4.62 86.31 0.40 1.46 16 30 H 0.12 0.83 7.75 -2.39 -0.02 0.81 16 31 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.08 0.35 6.52 -2.38 -0.02 0.34 16 34 H 0.12 1.12 5.93 -2.39 -0.01 1.10 16 35 H 0.16 0.14 8.13 -2.39 -0.02 0.12 16 36 H 0.09 1.64 8.02 -2.39 -0.02 1.62 16 37 H 0.03 0.91 4.34 -2.38 -0.01 0.90 16 38 H 0.07 1.98 6.52 -2.39 -0.02 1.96 16 39 H 0.06 1.18 6.14 -2.39 -0.01 1.17 16 40 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.13 2.28 5.93 -2.39 -0.01 2.26 16 42 H 0.03 1.09 5.97 -2.38 -0.01 1.07 16 43 H 0.04 1.31 7.29 -2.38 -0.02 1.29 16 44 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 45 H 0.05 1.57 8.02 -2.38 -0.02 1.55 16 46 H 0.05 1.30 4.34 -2.39 -0.01 1.29 16 47 H 0.03 0.76 6.15 -2.39 -0.01 0.75 16 48 H 0.10 1.45 6.49 -2.39 -0.02 1.44 16 Total: -1.00 -84.49 379.55 3.73 -80.75 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.96 Total: 6.21 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 6.80 Total: 0.99 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -5.90 Total: -132.09 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Total: -84.49 3.73 -80.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023478199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.587 kcal (2) G-P(sol) polarization free energy of solvation -84.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds