Wall clock time and date at job start Tue Mar 31 2020 05:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46808 * 2 1 4 4 C 1.52998 * 109.47010 * 120.00133 * 2 1 3 5 5 N 1.46496 * 109.46921 * 65.00216 * 4 2 1 6 6 C 1.46499 * 119.99934 * 269.99692 * 5 4 2 7 7 C 1.50700 * 109.46912 * 270.00300 * 6 5 4 8 8 H 1.08000 * 120.00441 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00073 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99555 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00282 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47348 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47406 * 119.99805 * 11 9 7 14 14 H 1.48509 * 109.47027 * 239.99695 * 11 9 7 15 15 C 1.34777 * 120.00001 * 90.00085 * 5 4 2 16 16 S 1.71198 * 119.99817 * 179.97438 * 15 5 4 17 17 N 1.34777 * 120.00128 * 359.97438 * 15 5 4 18 18 C 1.46498 * 119.99828 * 180.27942 * 17 15 5 19 19 C 1.52996 * 109.47059 * 179.72339 * 18 17 15 20 20 N 1.46896 * 109.47256 * 180.02562 * 19 18 17 21 21 C 1.47021 * 111.00009 * 293.63022 * 20 19 18 22 22 C 1.53094 * 109.26180 * 177.60964 * 21 20 19 23 23 O 1.43013 * 109.25636 * 56.84970 * 22 21 20 24 24 C 1.43017 * 113.73976 * 301.32536 * 23 22 21 25 25 C 1.47012 * 111.00206 * 169.99952 * 20 19 18 26 26 H 1.09001 * 109.47043 * 59.99738 * 1 2 3 27 27 H 1.08999 * 109.47012 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46905 * 300.00337 * 1 2 3 29 29 H 1.09000 * 109.46790 * 240.00440 * 2 1 3 30 30 H 1.09004 * 109.46638 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47532 * 299.99963 * 3 2 1 32 32 H 1.09000 * 109.47086 * 60.00621 * 3 2 1 33 33 H 1.08999 * 109.46782 * 304.99838 * 4 2 1 34 34 H 1.09005 * 109.46633 * 184.99874 * 4 2 1 35 35 H 1.08996 * 109.47092 * 30.00115 * 6 5 4 36 36 H 1.08998 * 109.47416 * 150.00325 * 6 5 4 37 37 H 0.96996 * 119.99369 * 180.02562 * 10 9 7 38 38 H 0.97001 * 119.99727 * 359.97438 * 17 15 5 39 39 H 1.09004 * 109.46963 * 299.72135 * 18 17 15 40 40 H 1.08994 * 109.47567 * 59.72287 * 18 17 15 41 41 H 1.09004 * 109.47066 * 299.99732 * 19 18 17 42 42 H 1.09000 * 109.47665 * 59.99541 * 19 18 17 43 43 H 1.09000 * 109.50522 * 297.54572 * 21 20 19 44 44 H 1.09003 * 109.49929 * 57.67289 * 21 20 19 45 45 H 1.09008 * 109.50457 * 296.91799 * 22 21 20 46 46 H 1.08991 * 109.54163 * 176.80945 * 22 21 20 47 47 H 1.08998 * 109.51230 * 298.74195 * 24 23 22 48 48 H 1.09004 * 109.54214 * 178.62944 * 24 23 22 49 49 H 1.09001 * 109.50992 * 302.32241 * 25 20 19 50 50 H 1.09001 * 109.50907 * 62.40764 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1904 6 6 0.3746 -2.5659 1.7611 7 6 0.5717 -2.9409 3.2074 8 1 1.5510 -2.8646 3.6564 9 6 -0.4979 -3.3823 3.9571 10 7 -1.6903 -3.4757 3.4101 11 14 -0.2538 -3.8463 5.7499 12 1 1.1709 -3.6531 6.1217 13 1 -1.1101 -2.9857 6.6051 14 1 -0.6281 -5.2698 5.9482 15 6 2.4716 -3.0330 0.6114 16 16 2.0190 -4.6826 0.5433 17 7 3.6470 -2.6345 0.0860 18 6 4.5345 -3.6120 -0.5488 19 6 5.7885 -2.9030 -1.0643 20 7 6.6781 -3.8830 -1.7014 21 6 7.2047 -4.8366 -0.7140 22 6 8.0767 -5.8728 -1.4278 23 8 9.1187 -5.2014 -2.1412 24 6 8.6415 -4.2656 -3.1117 25 6 7.7751 -3.2131 -2.4149 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2951 35 1 -0.3483 -1.7532 1.6918 36 1 0.0043 -3.4298 1.2091 37 1 -2.4429 -3.7858 3.9376 38 1 3.9033 -1.6997 0.1243 39 1 4.8199 -4.3707 0.1800 40 1 4.0163 -4.0857 -1.3825 41 1 5.5031 -2.1443 -1.7931 42 1 6.3068 -2.4292 -0.2307 43 1 7.8038 -4.3029 0.0238 44 1 6.3758 -5.3395 -0.2159 45 1 7.4655 -6.4429 -2.1275 46 1 8.5152 -6.5483 -0.6934 47 1 8.0467 -4.7890 -3.8603 48 1 9.4881 -3.7782 -3.5953 49 1 7.3628 -2.5309 -3.1584 50 1 8.3829 -2.6528 -1.7044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025285492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:46 Heat of formation + Delta-G solvation = -23.401086 kcal Electronic energy + Delta-G solvation = -26871.689018 eV Core-core repulsion = 23253.265113 eV Total energy + Delta-G solvation = -3618.423905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.94119 -39.20914 -36.92467 -35.51965 -34.23266 -32.48031 -31.51779 -30.06143 -27.92890 -27.08931 -26.85975 -25.70536 -24.36666 -23.17493 -22.31659 -21.25523 -20.67496 -20.00869 -17.50616 -17.16380 -16.57620 -16.44174 -16.33630 -15.75760 -15.35262 -15.18212 -15.01428 -14.68649 -14.54464 -14.27641 -14.16367 -13.77430 -13.30995 -12.91504 -12.74366 -12.62712 -12.33410 -12.25168 -12.17832 -11.76987 -11.73463 -11.67484 -11.43836 -11.25910 -10.98936 -10.90142 -10.78946 -10.72131 -10.58444 -10.48914 -10.16981 -10.07624 -9.97618 -9.55907 -8.76486 -8.41396 -8.16118 -6.89705 -6.36323 -6.02568 -4.05346 2.23927 2.68711 3.16952 3.31924 3.40943 3.43282 3.56072 3.68869 3.91070 4.46628 4.48047 4.60355 4.64833 4.78007 4.80886 4.86475 4.87279 4.98329 5.02880 5.06434 5.19098 5.24104 5.33023 5.34507 5.34929 5.45388 5.54816 5.56496 5.66184 5.66463 5.81965 5.86647 5.88639 5.94638 5.96168 6.10241 6.30944 6.42653 6.51799 6.58217 6.60467 6.73618 6.83594 7.22124 7.51944 7.61195 7.93457 8.03617 8.19714 8.93169 9.56921 11.05953 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.003130 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.148436 B = 8942.905390 C =10472.646138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.098 3.902 5 N -0.538 5.538 6 C 0.235 3.765 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.067 3.933 10 N -0.891 5.891 11 Si 0.898 3.102 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.282 1.282 15 C 0.563 3.437 16 S -0.657 6.657 17 N -0.707 5.707 18 C 0.135 3.865 19 C 0.045 3.955 20 N -0.529 5.529 21 C 0.011 3.989 22 C 0.064 3.936 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.019 3.981 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.263 0.737 38 H 0.387 0.613 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.044 0.956 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.570 8.088 -11.973 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.201 4.201 4 C -0.029 4.029 5 N -0.243 5.243 6 C 0.116 3.884 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.136 4.136 10 N -0.529 5.529 11 Si 0.726 3.274 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.207 1.207 15 C 0.204 3.796 16 S -0.528 6.528 17 N -0.343 5.343 18 C 0.010 3.990 19 C -0.084 4.084 20 N -0.255 5.255 21 C -0.117 4.117 22 C -0.013 4.013 23 O -0.306 6.306 24 C -0.013 4.013 25 C -0.110 4.110 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.224 0.776 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.118 0.882 47 H 0.079 0.921 48 H 0.115 0.885 49 H 0.105 0.895 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 16.970 6.676 -12.257 21.972 hybrid contribution 0.588 1.657 1.739 2.473 sum 17.558 8.333 -10.518 22.099 Atomic orbital electron populations 1.21950 0.93950 1.03460 1.01423 1.21555 0.97770 0.95975 0.97881 1.21787 1.00423 0.95684 1.02254 1.21864 0.98993 0.82397 0.99634 1.47791 1.20773 1.04830 1.50889 1.20043 0.75967 0.97950 0.94397 1.21186 0.95060 1.44887 0.94425 0.92714 1.24815 0.94991 0.95198 0.98560 1.69928 0.99790 1.46791 1.36439 0.86448 0.77978 0.78384 0.84611 1.19985 1.21195 1.20746 1.22091 0.81845 0.94533 0.81174 1.93159 1.84069 0.96329 1.79256 1.44817 1.18249 1.11327 1.59904 1.21374 0.88273 0.90635 0.98693 1.22264 0.93637 0.94393 0.98085 1.62033 1.18012 1.17182 1.28253 1.22943 0.99476 0.95332 0.93976 1.22693 0.89199 0.93700 0.95733 1.87980 1.32568 1.56645 1.53445 1.22651 0.97854 0.90004 0.90805 1.22795 0.92570 0.97002 0.98587 0.93183 0.91016 0.92212 0.91479 0.93003 0.92398 0.92206 0.88480 0.91983 0.93779 0.90564 0.92773 0.77569 0.90161 0.89173 0.90139 0.94248 0.93807 0.88413 0.91859 0.88236 0.92052 0.88500 0.89522 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.18 37.16 0.30 -1.82 16 2 C -0.11 -1.37 3.13 -90.62 -0.28 -1.65 16 3 C -0.14 -1.34 9.19 37.16 0.34 -0.99 16 4 C 0.10 1.42 4.66 -4.04 -0.02 1.41 16 5 N -0.54 -10.49 2.28 -177.09 -0.40 -10.89 16 6 C 0.23 5.76 3.99 -5.19 -0.02 5.74 16 7 C -0.52 -14.14 9.39 -34.44 -0.32 -14.46 16 8 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.07 1.88 5.46 -17.81 -0.10 1.78 16 10 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 11 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 15 C 0.56 11.03 7.70 -86.92 -0.67 10.36 16 16 S -0.66 -16.13 27.17 -107.50 -2.92 -19.05 16 17 N -0.71 -10.13 5.42 -62.03 -0.34 -10.47 16 18 C 0.14 1.75 5.06 -4.04 -0.02 1.73 16 19 C 0.04 0.42 5.07 -3.83 -0.02 0.40 16 20 N -0.53 -5.07 4.73 -234.30 -1.11 -6.17 16 21 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 22 C 0.06 0.57 7.01 37.21 0.26 0.83 16 23 O -0.39 -3.92 10.83 -35.23 -0.38 -4.30 16 24 C 0.06 0.50 7.01 37.21 0.26 0.76 16 25 C 0.02 0.15 5.64 -3.71 -0.02 0.13 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.24 5.89 -51.93 -0.31 0.93 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 34 H 0.06 0.75 6.36 -51.93 -0.33 0.42 16 35 H 0.04 1.08 5.98 -51.93 -0.31 0.77 16 36 H 0.08 2.17 6.58 -51.93 -0.34 1.82 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.39 4.44 6.20 -40.82 -0.25 4.18 16 39 H 0.08 1.17 6.37 -51.93 -0.33 0.84 16 40 H 0.09 1.33 7.99 -51.93 -0.41 0.92 16 41 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 1.01 6.38 -51.93 -0.33 0.68 16 45 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 50 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -33.63 399.40 -12.66 -46.29 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.92 Total: 2.64 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.33 Total: 4.28 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -1.11 Total: -52.79 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.38 Total: -4.30 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -16.13 SS G_CDS: -2.92 Total: -19.05 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.63 -12.66 -46.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025285492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.887 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds