Wall clock time and date at job start Tue Mar 31 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38311 * 119.92803 * 2 1 4 4 C 1.38089 * 120.07046 * 179.97438 * 3 2 1 5 5 C 1.38892 * 119.93071 * 0.02806 * 4 3 2 6 6 N 1.39917 * 120.07306 * 179.97438 * 5 4 3 7 7 C 1.34778 * 119.99997 * 33.29142 * 6 5 4 8 8 O 1.21287 * 119.99927 * 5.27980 * 7 6 5 9 9 C 1.50695 * 120.00290 * 185.27238 * 7 6 5 10 10 S 1.80998 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00129 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99720 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00262 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00033 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46943 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46959 * 120.00269 * 15 13 11 18 18 H 1.48499 * 109.47334 * 240.00448 * 15 13 11 19 19 C 1.38852 * 119.85771 * 359.97438 * 5 4 3 20 20 C 1.38131 * 119.93062 * 359.71930 * 19 5 4 21 21 S 1.76200 * 119.96864 * 180.27813 * 20 19 5 22 22 N 1.65604 * 107.21796 * 115.25873 * 21 20 19 23 23 O 1.42104 * 106.40594 * 228.79799 * 21 20 19 24 24 O 1.42097 * 106.40004 * 1.71875 * 21 20 19 25 25 H 1.09003 * 109.47036 * 89.99932 * 1 2 3 26 26 H 1.09001 * 109.47319 * 329.99657 * 1 2 3 27 27 H 1.08998 * 109.46564 * 209.99721 * 1 2 3 28 28 H 1.08002 * 119.96092 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.03115 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00568 * 213.29686 * 6 5 4 31 31 H 1.09004 * 109.47213 * 300.00509 * 9 7 6 32 32 H 1.09003 * 109.47036 * 60.00436 * 9 7 6 33 33 H 0.97000 * 120.00381 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.03614 * 180.02562 * 19 5 4 35 35 H 0.96999 * 120.00374 * 359.97438 * 22 21 20 36 36 H 0.97005 * 119.99747 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1987 0.0000 4 6 3.5780 1.2021 0.0005 5 6 4.2739 0.0002 0.0005 6 7 5.6731 0.0002 0.0005 7 6 6.3470 0.9758 0.6412 8 8 5.7444 1.7988 1.2974 9 6 7.8492 1.0440 0.5425 10 16 8.4537 2.4527 1.5049 11 6 10.1856 2.2971 1.2203 12 1 10.5612 1.4959 0.6010 13 6 11.0670 3.2048 1.7909 14 7 10.6092 4.1816 2.5452 15 14 12.9031 3.0402 1.4885 16 1 13.1573 1.8686 0.6124 17 1 13.4082 4.2706 0.8280 18 1 13.6032 2.8510 2.7844 19 6 3.5782 -1.2015 0.0004 20 6 2.1969 -1.1982 0.0063 21 16 1.3131 -2.7224 0.0136 22 7 0.4894 -2.8046 1.4479 23 8 0.3306 -2.6217 -1.0081 24 8 2.2908 -3.7529 0.0528 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 0.8900 0.5139 27 1 -0.3632 -0.8900 0.5138 28 1 1.6552 2.1330 -0.0004 29 1 4.1161 2.1384 0.0010 30 1 6.1582 -0.7019 -0.4607 31 1 8.2813 0.1236 0.9355 32 1 8.1396 1.1651 -0.5011 33 1 11.2252 4.8157 2.9443 34 1 4.1165 -2.1378 0.0008 35 1 0.5601 -2.0809 2.0900 36 1 -0.0632 -3.5767 1.6463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032703458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:32 Heat of formation + Delta-G solvation = -83.009209 kcal Electronic energy + Delta-G solvation = -22718.454387 eV Core-core repulsion = 19034.980604 eV Total energy + Delta-G solvation = -3683.473782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.61496 -38.78003 -37.46515 -36.10470 -35.17774 -33.66070 -32.51503 -32.04410 -31.58259 -29.45541 -26.46430 -25.53836 -23.85979 -22.16535 -20.95535 -19.71758 -18.66689 -18.09855 -17.76102 -17.02071 -16.72727 -16.15157 -15.86126 -15.52087 -15.41647 -14.87880 -14.70822 -14.30556 -14.18671 -13.95305 -13.50728 -13.01988 -12.76873 -12.63384 -12.56960 -12.42618 -12.34072 -12.12381 -12.10255 -11.94999 -11.14352 -11.12872 -11.09411 -10.84268 -10.79088 -10.47745 -9.91717 -9.78828 -9.45595 -9.15472 -8.37404 -8.28483 -6.61845 -6.30461 -4.02455 0.08262 0.54398 0.94925 2.63701 2.74964 2.81862 3.16524 3.17021 3.22331 3.26506 3.46054 3.49014 4.11412 4.27361 4.41040 4.52096 4.74385 4.81903 4.99012 5.05443 5.19177 5.24576 5.28397 5.44209 5.50040 5.59292 5.60882 5.70106 5.73339 5.95920 5.99300 6.09820 6.22647 6.62288 6.71646 7.30571 7.52085 8.21645 8.27054 9.15419 10.77019 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002297 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.691253 B =12186.854891 C =12702.033972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 C -0.118 4.118 4 C -0.059 4.059 5 C 0.138 3.862 6 N -0.681 5.681 7 C 0.533 3.467 8 O -0.497 6.497 9 C -0.155 4.155 10 S -0.057 6.057 11 C -0.536 4.536 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.920 3.080 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.049 4.049 20 C -0.658 4.658 21 S 2.706 3.294 22 N -1.251 6.251 23 O -0.961 6.961 24 O -0.967 6.967 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.413 0.587 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.269 0.731 34 H 0.148 0.852 35 H 0.418 0.582 36 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.968 -12.084 -4.751 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.012 4.012 3 C -0.138 4.138 4 C -0.080 4.080 5 C 0.042 3.958 6 N -0.328 5.328 7 C 0.321 3.679 8 O -0.369 6.369 9 C -0.305 4.305 10 S 0.170 5.830 11 C -0.685 4.685 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.747 3.253 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.071 4.071 20 C -0.747 4.747 21 S 2.795 3.205 22 N -0.926 5.926 23 O -0.950 6.950 24 O -0.956 6.956 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.166 0.834 30 H 0.250 0.750 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.166 0.834 35 H 0.246 0.754 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -21.737 -11.160 -4.399 24.827 hybrid contribution 2.318 -0.670 -0.469 2.458 sum -19.419 -11.829 -4.868 23.253 Atomic orbital electron populations 1.21250 0.90104 1.03722 1.04759 1.19531 0.95770 0.91900 0.93955 1.21075 0.93669 0.97809 1.01222 1.21633 0.94336 0.98438 0.93546 1.17793 0.83574 0.93741 1.00663 1.43731 1.03790 1.30252 1.55028 1.20606 0.90025 0.79848 0.77419 1.90714 1.69743 1.38538 1.37903 1.23559 0.92201 1.08026 1.06750 1.85402 1.05013 1.29973 1.62656 1.22888 0.91190 1.17410 1.36965 0.90724 1.25003 0.99741 0.94406 0.94412 1.70014 1.35446 1.14474 1.30292 0.86090 0.82743 0.78270 0.78244 1.19566 1.20514 1.20502 1.20628 0.92066 0.98069 0.96317 1.30058 1.05187 1.18421 1.20993 1.01430 0.73459 0.72936 0.72677 1.53115 1.67517 1.32931 1.39055 1.93624 1.59684 1.86326 1.55358 1.93587 1.61260 1.54747 1.86031 0.88639 0.89883 0.91343 0.84491 0.83399 0.75047 0.88633 0.88552 0.92130 0.83440 0.75444 0.74958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.73 36.01 0.31 -0.67 16 2 C -0.01 -0.09 5.88 -104.59 -0.61 -0.70 16 3 C -0.12 -1.24 9.69 -39.61 -0.38 -1.62 16 4 C -0.06 -0.77 8.66 -39.39 -0.34 -1.11 16 5 C 0.14 1.79 6.28 -83.70 -0.53 1.26 16 6 N -0.68 -8.82 5.34 -9.87 -0.05 -8.87 16 7 C 0.53 9.17 7.59 -10.99 -0.08 9.09 16 8 O -0.50 -10.20 13.55 5.55 0.08 -10.13 16 9 C -0.15 -2.89 6.16 36.00 0.22 -2.67 16 10 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 11 C -0.54 -14.76 9.50 30.94 0.29 -14.47 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -25.49 13.22 55.49 0.73 -24.75 16 15 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.05 -0.55 9.46 -39.39 -0.37 -0.92 16 20 C -0.66 -6.70 5.87 -39.61 -0.23 -6.93 16 21 S 2.71 24.70 5.48 -107.50 -0.59 24.11 16 22 N -1.25 -6.40 8.34 60.35 0.50 -5.90 16 23 O -0.96 -10.95 16.44 -57.17 -0.94 -11.89 16 24 O -0.97 -11.79 16.97 -57.17 -0.97 -12.76 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.39 5.13 -51.93 -0.27 0.13 16 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.15 2.15 6.41 -52.49 -0.34 1.81 16 30 H 0.41 3.95 8.82 -40.82 -0.36 3.59 16 31 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 32 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.15 1.47 7.33 -52.49 -0.38 1.08 16 35 H 0.42 1.41 8.64 -34.48 -0.30 1.11 16 36 H 0.42 1.31 8.96 -34.47 -0.31 1.00 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -37.54 336.08 -8.84 -46.38 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.61 Total: 3.34 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.82 Total: -16.80 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 1.18 Total: -39.52 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.84 Total: -34.79 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 23.23 SS G_CDS: -2.80 Total: 20.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.54 -8.84 -46.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032703458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.626 kcal (2) G-P(sol) polarization free energy of solvation -37.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds