Wall clock time and date at job start Tue Mar 31 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38311 * 119.92803 * 2 1 4 4 C 1.38089 * 120.07046 * 179.97438 * 3 2 1 5 5 C 1.38892 * 119.93071 * 0.02806 * 4 3 2 6 6 N 1.39917 * 120.07306 * 179.97438 * 5 4 3 7 7 C 1.34778 * 119.99997 * 33.29142 * 6 5 4 8 8 O 1.21287 * 119.99927 * 5.27980 * 7 6 5 9 9 C 1.50695 * 120.00290 * 185.27238 * 7 6 5 10 10 S 1.80998 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00129 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99720 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00262 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00033 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46943 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46959 * 120.00269 * 15 13 11 18 18 H 1.48499 * 109.47334 * 240.00448 * 15 13 11 19 19 C 1.38852 * 119.85771 * 359.97438 * 5 4 3 20 20 C 1.38131 * 119.93062 * 359.71930 * 19 5 4 21 21 S 1.76200 * 119.96864 * 180.27813 * 20 19 5 22 22 N 1.65604 * 107.21796 * 115.25873 * 21 20 19 23 23 O 1.42104 * 106.40594 * 228.79799 * 21 20 19 24 24 O 1.42097 * 106.40004 * 1.71875 * 21 20 19 25 25 H 1.09003 * 109.47036 * 89.99932 * 1 2 3 26 26 H 1.09001 * 109.47319 * 329.99657 * 1 2 3 27 27 H 1.08998 * 109.46564 * 209.99721 * 1 2 3 28 28 H 1.08002 * 119.96092 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.03115 * 180.02562 * 4 3 2 30 30 H 0.96999 * 120.00568 * 213.29686 * 6 5 4 31 31 H 1.09004 * 109.47213 * 300.00509 * 9 7 6 32 32 H 1.09003 * 109.47036 * 60.00436 * 9 7 6 33 33 H 0.97000 * 120.00381 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.03614 * 180.02562 * 19 5 4 35 35 H 0.96999 * 120.00374 * 359.97438 * 22 21 20 36 36 H 0.97005 * 119.99747 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1987 0.0000 4 6 3.5780 1.2021 0.0005 5 6 4.2739 0.0002 0.0005 6 7 5.6731 0.0002 0.0005 7 6 6.3470 0.9758 0.6412 8 8 5.7444 1.7988 1.2974 9 6 7.8492 1.0440 0.5425 10 16 8.4537 2.4527 1.5049 11 6 10.1856 2.2971 1.2203 12 1 10.5612 1.4959 0.6010 13 6 11.0670 3.2048 1.7909 14 7 10.6092 4.1816 2.5452 15 14 12.9031 3.0402 1.4885 16 1 13.1573 1.8686 0.6124 17 1 13.4082 4.2706 0.8280 18 1 13.6032 2.8510 2.7844 19 6 3.5782 -1.2015 0.0004 20 6 2.1969 -1.1982 0.0063 21 16 1.3131 -2.7224 0.0136 22 7 0.4894 -2.8046 1.4479 23 8 0.3306 -2.6217 -1.0081 24 8 2.2908 -3.7529 0.0528 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 0.8900 0.5139 27 1 -0.3632 -0.8900 0.5138 28 1 1.6552 2.1330 -0.0004 29 1 4.1161 2.1384 0.0010 30 1 6.1582 -0.7019 -0.4607 31 1 8.2813 0.1236 0.9355 32 1 8.1396 1.1651 -0.5011 33 1 11.2252 4.8157 2.9443 34 1 4.1165 -2.1378 0.0008 35 1 0.5601 -2.0809 2.0900 36 1 -0.0632 -3.5767 1.6463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032703458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:32 Heat of formation + Delta-G solvation = -113.474167 kcal Electronic energy + Delta-G solvation = -22719.775446 eV Core-core repulsion = 19034.980604 eV Total energy + Delta-G solvation = -3684.794842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.71690 -39.86592 -38.30896 -36.94665 -36.29035 -34.60547 -34.22722 -33.00500 -32.44878 -30.77658 -27.77676 -27.20123 -24.75074 -23.08944 -22.09898 -20.49461 -19.97453 -19.48667 -18.51170 -18.17410 -17.70856 -17.10465 -16.89903 -16.85771 -16.51649 -16.37871 -15.92578 -15.71019 -15.11096 -14.90921 -14.79409 -14.50642 -13.91125 -13.67982 -13.37681 -13.24151 -13.22668 -13.17284 -13.16144 -12.93004 -12.87261 -12.78352 -12.61752 -11.99039 -11.75386 -11.53182 -11.30560 -11.17586 -11.08200 -10.41599 -10.32294 -9.25713 -8.69230 -8.37261 -6.15141 -0.66541 -0.33176 0.04743 1.19963 1.38781 1.40813 1.43330 1.55665 2.02610 2.10361 2.24355 2.34665 2.67524 2.97685 3.23917 3.49579 3.65473 3.70371 3.82566 3.93509 4.18604 4.23517 4.32306 4.45948 4.51374 4.61801 4.72413 4.82462 5.00110 5.11720 5.25998 5.27704 5.31405 5.41069 5.76272 6.18122 6.22820 6.31637 6.96851 7.05006 8.72045 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002297 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.691253 B =12186.854891 C =12702.033972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.000 4.000 3 C -0.120 4.120 4 C -0.079 4.079 5 C 0.114 3.886 6 N -0.660 5.660 7 C 0.538 3.462 8 O -0.537 6.537 9 C -0.131 4.131 10 S -0.143 6.143 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.257 1.257 17 H -0.275 1.275 18 H -0.274 1.274 19 C -0.049 4.049 20 C -0.663 4.663 21 S 2.731 3.269 22 N -1.235 6.235 23 O -0.981 6.981 24 O -0.997 6.997 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.126 0.874 30 H 0.430 0.570 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.271 0.729 34 H 0.160 0.840 35 H 0.429 0.571 36 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.850 -13.819 -5.401 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.002 4.002 3 C -0.139 4.139 4 C -0.099 4.099 5 C 0.018 3.982 6 N -0.308 5.308 7 C 0.325 3.675 8 O -0.413 6.413 9 C -0.282 4.282 10 S 0.084 5.916 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.181 1.181 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.070 4.070 20 C -0.750 4.750 21 S 2.819 3.181 22 N -0.916 5.916 23 O -0.970 6.970 24 O -0.986 6.986 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.178 0.822 29 H 0.143 0.857 30 H 0.269 0.731 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.080 0.920 34 H 0.177 0.823 35 H 0.259 0.741 36 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -22.643 -12.938 -5.074 26.568 hybrid contribution 2.378 -0.213 -0.299 2.406 sum -20.266 -13.151 -5.373 24.749 Atomic orbital electron populations 1.21412 0.87887 1.05665 1.05419 1.19881 0.97315 0.91169 0.91847 1.21350 0.92742 0.99365 1.00443 1.21621 0.95613 0.97713 0.94980 1.17914 0.83134 0.94425 1.02693 1.43349 1.04173 1.29339 1.53928 1.20277 0.89379 0.80299 0.77515 1.90706 1.70170 1.40392 1.39997 1.23378 0.93319 1.05140 1.06389 1.85540 1.05888 1.34932 1.65205 1.23232 0.91569 1.17657 1.36900 0.89803 1.26103 1.05141 0.93884 0.93958 1.70170 1.37337 1.15580 1.31616 0.84915 0.75995 0.78716 0.78385 1.18068 1.19994 1.19986 1.20766 0.92678 0.97825 0.95746 1.30272 1.04903 1.19268 1.20583 1.00556 0.72758 0.71812 0.72954 1.52725 1.66973 1.33942 1.37948 1.93603 1.60041 1.86378 1.57020 1.93555 1.62484 1.55840 1.86747 0.88442 0.87483 0.90037 0.82212 0.85656 0.73075 0.86560 0.86523 0.91958 0.82268 0.74074 0.73424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.73 71.24 0.62 -0.99 16 2 C 0.00 0.00 5.88 -19.84 -0.12 -0.12 16 3 C -0.12 -2.36 9.69 22.25 0.22 -2.15 16 4 C -0.08 -2.07 8.66 22.39 0.19 -1.87 16 5 C 0.11 2.88 6.28 38.15 0.24 3.12 16 6 N -0.66 -16.70 5.34 -303.51 -1.62 -18.32 16 7 C 0.54 18.61 7.59 87.66 0.66 19.28 16 8 O -0.54 -22.85 13.55 -3.05 -0.04 -22.89 16 9 C -0.13 -4.86 6.16 71.23 0.44 -4.42 16 10 S -0.14 -7.59 20.57 -56.49 -1.16 -8.75 16 11 C -0.55 -30.24 9.50 67.95 0.65 -29.59 16 12 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 13 C 0.01 0.78 5.49 84.86 0.47 1.25 16 14 N -0.91 -54.76 13.22 21.65 0.29 -54.47 16 15 Si 1.00 42.77 29.55 68.60 2.03 44.79 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 C -0.05 -1.04 9.46 22.39 0.21 -0.82 16 20 C -0.66 -12.32 5.87 22.25 0.13 -12.19 16 21 S 2.73 44.40 5.48 -56.49 -0.31 44.09 16 22 N -1.23 -9.31 8.34 37.02 0.31 -9.00 16 23 O -0.98 -20.35 16.44 -128.00 -2.10 -22.45 16 24 O -1.00 -22.75 16.97 -128.00 -2.17 -24.92 16 25 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.11 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.08 0.67 5.13 -2.39 -0.01 0.66 16 28 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.13 3.85 6.41 -2.91 -0.02 3.84 16 30 H 0.43 7.61 8.82 -92.71 -0.82 6.79 16 31 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.16 2.94 7.33 -2.91 -0.02 2.92 16 35 H 0.43 1.61 8.64 -96.74 -0.84 0.78 16 36 H 0.43 1.48 8.96 -96.74 -0.87 0.62 16 Total: -1.00 -83.17 336.08 -2.42 -85.59 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -1.35 Total: 14.85 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.71 Total: -28.51 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -1.03 Total: -81.79 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -4.32 Total: -70.26 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 36.81 SS G_CDS: -1.47 Total: 35.34 kcal Total: -83.17 -2.42 -85.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032703458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.886 kcal (2) G-P(sol) polarization free energy of solvation -83.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds