Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46867 * 2 1 4 4 C 1.46956 * 110.99737 * 190.00070 * 3 2 1 5 5 C 1.53055 * 109.36312 * 183.19004 * 4 3 2 6 6 N 1.46953 * 109.36517 * 301.60111 * 5 4 3 7 7 C 1.46896 * 111.00257 * 183.19196 * 6 5 4 8 8 C 1.52996 * 109.47438 * 170.00068 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.46883 * 180.02562 * 10 9 8 12 12 C 1.34775 * 119.99531 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00300 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99773 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47016 * 180.02562 * 14 12 11 16 16 C 1.76204 * 100.00065 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99910 * 179.97438 * 16 15 14 19 19 N 1.31636 * 119.99753 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00357 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47174 * 89.99298 * 20 18 16 22 22 H 1.48498 * 109.47245 * 209.99827 * 20 18 16 23 23 H 1.48501 * 109.47001 * 329.99938 * 20 18 16 24 24 C 1.46951 * 110.88269 * 59.31683 * 6 5 4 25 25 C 1.46953 * 111.00258 * 313.80308 * 3 2 1 26 26 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47087 * 299.99667 * 1 2 3 28 28 H 1.08993 * 109.47614 * 59.99524 * 1 2 3 29 29 H 1.08995 * 109.47015 * 240.00479 * 2 1 3 30 30 H 1.08994 * 109.47357 * 119.99990 * 2 1 3 31 31 H 1.09003 * 109.49191 * 63.22256 * 4 3 2 32 32 H 1.08996 * 109.49029 * 303.15772 * 4 3 2 33 33 H 1.09000 * 109.48837 * 181.63050 * 5 4 3 34 34 H 1.08997 * 109.48482 * 61.56852 * 5 4 3 35 35 H 1.09000 * 109.47585 * 49.99274 * 7 6 5 36 36 H 1.09001 * 109.46551 * 289.99759 * 7 6 5 37 37 H 1.08996 * 109.47452 * 59.99844 * 8 7 6 38 38 H 1.09001 * 109.46997 * 299.99418 * 8 7 6 39 39 H 1.09001 * 109.47502 * 60.00153 * 9 8 7 40 40 H 1.09001 * 109.47289 * 299.99950 * 9 8 7 41 41 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 42 42 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 43 43 H 0.96992 * 119.99966 * 359.97438 * 11 10 9 44 44 H 1.08998 * 109.47224 * 299.99707 * 14 12 11 45 45 H 1.08993 * 109.47046 * 60.00641 * 14 12 11 46 46 H 0.96998 * 119.99664 * 180.02562 * 19 18 16 47 47 H 1.09003 * 109.48897 * 60.65013 * 24 6 5 48 48 H 1.08998 * 109.49302 * 180.70847 * 24 6 5 49 49 H 1.09007 * 109.48844 * 296.78098 * 25 3 2 50 50 H 1.09000 * 109.49165 * 56.84313 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4690 1.4312 -0.2383 5 6 3.9516 2.8811 -0.1517 6 7 3.2318 3.6941 -1.1418 7 6 3.7215 5.0791 -1.1419 8 6 3.1348 5.8275 -2.3405 9 6 3.6444 7.2701 -2.3401 10 6 3.0582 8.0183 -3.5391 11 7 3.5466 9.3995 -3.5391 12 6 3.1598 10.2510 -4.5095 13 8 2.4071 9.8740 -5.3825 14 6 3.6617 11.6720 -4.5092 15 16 2.9684 12.5571 -5.9277 16 6 3.6998 14.1419 -5.6867 17 1 4.3559 14.3117 -4.8458 18 6 3.4328 15.1721 -6.5777 19 7 3.9788 16.3563 -6.3974 20 14 2.2975 14.8788 -8.0318 21 1 0.8995 15.1895 -7.6389 22 1 2.7013 15.7560 -9.1599 23 1 2.3891 13.4576 -8.4525 24 6 1.7825 3.6479 -0.9036 25 6 1.2998 2.1981 -0.9901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.6875 1.0338 -1.2295 32 1 3.9806 0.8320 0.5149 33 1 5.0214 2.9211 -0.3567 34 1 3.7578 3.2697 0.8481 35 1 4.8093 5.0799 -1.2099 36 1 3.4148 5.5728 -0.2198 37 1 2.0470 5.8267 -2.2723 38 1 3.4415 5.3337 -3.2626 39 1 4.7323 7.2713 -2.4081 40 1 3.3374 7.7636 -1.4180 41 1 3.3656 7.5247 -4.4611 42 1 1.9704 8.0172 -3.4716 43 1 4.1483 9.7011 -2.8407 44 1 3.3539 12.1659 -3.5876 45 1 4.7496 11.6731 -4.5763 46 1 3.7919 17.0763 -7.0198 47 1 1.5640 4.0453 0.0876 48 1 1.2708 4.2471 -1.6568 49 1 1.4936 1.8094 -1.9899 50 1 0.2300 2.1581 -0.7851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042596414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = -39.621107 kcal Electronic energy + Delta-G solvation = -24769.234619 eV Core-core repulsion = 21150.107361 eV Total energy + Delta-G solvation = -3619.127258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.94153 -39.25649 -37.12400 -35.51550 -33.29761 -32.43017 -31.65006 -31.02466 -29.71765 -27.88069 -25.78446 -25.52251 -24.38402 -22.77429 -21.93320 -21.40906 -20.27192 -20.16207 -17.85205 -16.97764 -16.32510 -16.30613 -15.97959 -15.63356 -15.43725 -15.29159 -15.02429 -14.94712 -14.89250 -14.71721 -13.91514 -13.80859 -13.37641 -13.28501 -13.00767 -12.79324 -12.72668 -12.35471 -12.31786 -12.09106 -11.98477 -11.78191 -11.68557 -11.56550 -11.52000 -11.25768 -11.09842 -11.03697 -10.99914 -10.75337 -10.58242 -9.84778 -9.50371 -9.00803 -8.93691 -8.89056 -8.70523 -8.48962 -6.90809 -6.28231 -3.99864 2.78101 3.00286 3.27557 3.34015 3.38475 3.46272 3.51663 3.70580 4.34099 4.36545 4.37976 4.49353 4.59304 4.63341 4.68717 4.73732 4.84513 4.91289 4.93873 4.96500 4.98476 5.00879 5.05470 5.10950 5.18039 5.23931 5.31586 5.32743 5.38283 5.40521 5.43274 5.47160 5.55228 5.57364 5.62652 5.68200 5.77573 5.79309 5.95041 6.00868 6.03035 6.47269 6.49330 6.56094 6.67425 6.69274 7.63827 7.94893 8.42272 8.51789 9.18087 10.81023 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.038842 B = 0.001438 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.688223 B =19464.211155 C =19971.047710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.057 3.943 5 C 0.057 3.943 6 N -0.541 5.541 7 C 0.057 3.943 8 C -0.113 4.113 9 C -0.129 4.129 10 C 0.122 3.878 11 N -0.738 5.738 12 C 0.529 3.471 13 O -0.521 6.521 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.053 3.947 25 C 0.051 3.949 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.399 0.601 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.042 0.958 48 H 0.084 0.916 49 H 0.042 0.958 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 -32.827 16.527 36.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.071 4.071 5 C -0.071 4.071 6 N -0.266 5.266 7 C -0.071 4.071 8 C -0.151 4.151 9 C -0.168 4.168 10 C -0.002 4.002 11 N -0.392 5.392 12 C 0.315 3.685 13 O -0.395 6.395 14 C -0.275 4.275 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.075 4.075 25 C -0.077 4.077 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.233 0.767 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.102 0.898 49 H 0.060 0.940 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.696 -33.285 15.003 36.609 hybrid contribution 0.819 0.768 0.791 1.374 sum -1.877 -32.517 15.795 36.198 Atomic orbital electron populations 1.21939 0.94888 1.02045 1.02599 1.22073 0.95889 0.88911 1.00796 1.62255 1.04080 1.10913 1.49544 1.22151 0.88091 0.96532 1.00327 1.22138 0.98178 0.92791 0.93976 1.62145 1.04133 1.11063 1.49258 1.22103 1.00129 0.87364 0.97469 1.21492 1.00834 0.93855 0.98932 1.21748 1.01276 0.95468 0.98272 1.21267 0.99113 0.81485 0.98345 1.45977 1.51643 1.11597 1.30027 1.20281 0.80387 0.86938 0.80881 1.90697 1.34752 1.77835 1.36229 1.23282 1.04648 0.94320 1.05246 1.84790 1.64892 1.10080 1.31858 1.22325 1.34093 0.94021 1.16481 0.89399 1.24710 0.95168 0.93987 0.97400 1.69942 1.42742 1.01785 1.37270 0.86733 0.81522 0.81120 0.82471 1.19208 1.19933 1.15920 1.22238 0.88341 0.96390 1.00519 1.22282 0.98688 0.92869 0.93834 0.92087 0.91744 0.92241 0.94844 0.90698 0.93909 0.90352 0.90211 0.93988 0.90617 0.94640 0.91559 0.90661 0.91123 0.91329 0.91590 0.91709 0.76713 0.88520 0.88466 0.91953 0.94001 0.89786 0.93977 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 9.17 37.16 0.34 -0.40 16 2 C 0.05 0.28 6.00 -3.82 -0.02 0.26 16 3 N -0.54 -3.71 4.86 -234.47 -1.14 -4.85 16 4 C 0.06 0.36 5.58 -3.77 -0.02 0.34 16 5 C 0.06 0.37 5.61 -3.77 -0.02 0.35 16 6 N -0.54 -3.96 4.71 -234.48 -1.10 -5.07 16 7 C 0.06 0.38 4.96 -3.83 -0.02 0.36 16 8 C -0.11 -0.78 5.15 -26.73 -0.14 -0.92 16 9 C -0.13 -0.94 5.33 -26.73 -0.14 -1.08 16 10 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 11 N -0.74 -9.35 5.56 -60.29 -0.33 -9.69 16 12 C 0.53 9.50 7.85 -10.98 -0.09 9.42 16 13 O -0.52 -11.43 15.86 5.56 0.09 -11.34 16 14 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 15 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 16 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 17 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 20 Si 0.86 21.90 27.74 -169.99 -4.72 17.18 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 24 C 0.05 0.38 5.41 -3.77 -0.02 0.36 16 25 C 0.05 0.35 4.93 -3.77 -0.02 0.33 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.28 6.26 -51.93 -0.33 -0.04 16 29 H 0.03 0.19 8.08 -51.93 -0.42 -0.23 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.47 8.03 -51.93 -0.42 0.06 16 36 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 37 H 0.07 0.47 6.49 -51.93 -0.34 0.14 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 44 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.57 6.34 -51.93 -0.33 0.24 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.09 0.50 5.99 -51.93 -0.31 0.19 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -34.14 403.87 -11.32 -45.46 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -9.24 Total: -2.29 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.27 Total: -3.96 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -1.80 Total: -45.49 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.14 -11.32 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042596414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.835 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds