Wall clock time and date at job start Tue Mar 31 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46867 * 2 1 4 4 C 1.46956 * 110.99737 * 190.00070 * 3 2 1 5 5 C 1.53055 * 109.36312 * 183.19004 * 4 3 2 6 6 N 1.46953 * 109.36517 * 301.60111 * 5 4 3 7 7 C 1.46896 * 111.00257 * 183.19196 * 6 5 4 8 8 C 1.52996 * 109.47438 * 170.00068 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.46883 * 180.02562 * 10 9 8 12 12 C 1.34775 * 119.99531 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00300 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99773 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47016 * 180.02562 * 14 12 11 16 16 C 1.76204 * 100.00065 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99910 * 179.97438 * 16 15 14 19 19 N 1.31636 * 119.99753 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00357 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47174 * 89.99298 * 20 18 16 22 22 H 1.48498 * 109.47245 * 209.99827 * 20 18 16 23 23 H 1.48501 * 109.47001 * 329.99938 * 20 18 16 24 24 C 1.46951 * 110.88269 * 59.31683 * 6 5 4 25 25 C 1.46953 * 111.00258 * 313.80308 * 3 2 1 26 26 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47087 * 299.99667 * 1 2 3 28 28 H 1.08993 * 109.47614 * 59.99524 * 1 2 3 29 29 H 1.08995 * 109.47015 * 240.00479 * 2 1 3 30 30 H 1.08994 * 109.47357 * 119.99990 * 2 1 3 31 31 H 1.09003 * 109.49191 * 63.22256 * 4 3 2 32 32 H 1.08996 * 109.49029 * 303.15772 * 4 3 2 33 33 H 1.09000 * 109.48837 * 181.63050 * 5 4 3 34 34 H 1.08997 * 109.48482 * 61.56852 * 5 4 3 35 35 H 1.09000 * 109.47585 * 49.99274 * 7 6 5 36 36 H 1.09001 * 109.46551 * 289.99759 * 7 6 5 37 37 H 1.08996 * 109.47452 * 59.99844 * 8 7 6 38 38 H 1.09001 * 109.46997 * 299.99418 * 8 7 6 39 39 H 1.09001 * 109.47502 * 60.00153 * 9 8 7 40 40 H 1.09001 * 109.47289 * 299.99950 * 9 8 7 41 41 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 42 42 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 43 43 H 0.96992 * 119.99966 * 359.97438 * 11 10 9 44 44 H 1.08998 * 109.47224 * 299.99707 * 14 12 11 45 45 H 1.08993 * 109.47046 * 60.00641 * 14 12 11 46 46 H 0.96998 * 119.99664 * 180.02562 * 19 18 16 47 47 H 1.09003 * 109.48897 * 60.65013 * 24 6 5 48 48 H 1.08998 * 109.49302 * 180.70847 * 24 6 5 49 49 H 1.09007 * 109.48844 * 296.78098 * 25 3 2 50 50 H 1.09000 * 109.49165 * 56.84313 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4690 1.4312 -0.2383 5 6 3.9516 2.8811 -0.1517 6 7 3.2318 3.6941 -1.1418 7 6 3.7215 5.0791 -1.1419 8 6 3.1348 5.8275 -2.3405 9 6 3.6444 7.2701 -2.3401 10 6 3.0582 8.0183 -3.5391 11 7 3.5466 9.3995 -3.5391 12 6 3.1598 10.2510 -4.5095 13 8 2.4071 9.8740 -5.3825 14 6 3.6617 11.6720 -4.5092 15 16 2.9684 12.5571 -5.9277 16 6 3.6998 14.1419 -5.6867 17 1 4.3559 14.3117 -4.8458 18 6 3.4328 15.1721 -6.5777 19 7 3.9788 16.3563 -6.3974 20 14 2.2975 14.8788 -8.0318 21 1 0.8995 15.1895 -7.6389 22 1 2.7013 15.7560 -9.1599 23 1 2.3891 13.4576 -8.4525 24 6 1.7825 3.6479 -0.9036 25 6 1.2998 2.1981 -0.9901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.6875 1.0338 -1.2295 32 1 3.9806 0.8320 0.5149 33 1 5.0214 2.9211 -0.3567 34 1 3.7578 3.2697 0.8481 35 1 4.8093 5.0799 -1.2099 36 1 3.4148 5.5728 -0.2198 37 1 2.0470 5.8267 -2.2723 38 1 3.4415 5.3337 -3.2626 39 1 4.7323 7.2713 -2.4081 40 1 3.3374 7.7636 -1.4180 41 1 3.3656 7.5247 -4.4611 42 1 1.9704 8.0172 -3.4716 43 1 4.1483 9.7011 -2.8407 44 1 3.3539 12.1659 -3.5876 45 1 4.7496 11.6731 -4.5763 46 1 3.7919 17.0763 -7.0198 47 1 1.5640 4.0453 0.0876 48 1 1.2708 4.2471 -1.6568 49 1 1.4936 1.8094 -1.9899 50 1 0.2300 2.1581 -0.7851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042596414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:08 Heat of formation + Delta-G solvation = -64.866663 kcal Electronic energy + Delta-G solvation = -24770.329349 eV Core-core repulsion = 21150.107361 eV Total energy + Delta-G solvation = -3620.221988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.66887 -40.41057 -37.73491 -36.42887 -34.67273 -34.16743 -32.26008 -31.64458 -30.90048 -28.68600 -27.84266 -26.35522 -24.90493 -23.48437 -22.43396 -22.19115 -21.44734 -20.69060 -19.86358 -17.85858 -17.47964 -17.23962 -17.06868 -16.99548 -16.44205 -16.04130 -15.83797 -15.78225 -15.67055 -15.47610 -15.35508 -14.93384 -14.70067 -14.53293 -14.04859 -13.58339 -13.46399 -13.34648 -13.31662 -13.01549 -12.93883 -12.72554 -12.69994 -12.50665 -12.37202 -12.27130 -12.14794 -12.04363 -11.86499 -11.66179 -11.53987 -11.29927 -11.16958 -10.99062 -10.53465 -10.12580 -9.41366 -9.23841 -8.99699 -8.51502 -6.22428 0.99568 1.31623 1.47306 1.56562 1.57029 2.23078 2.27400 2.71816 2.86900 2.88402 2.94571 3.79369 3.86108 3.89151 3.97512 4.03551 4.13257 4.21037 4.23428 4.26955 4.33766 4.38672 4.43488 4.47551 4.49625 4.51845 4.57912 4.63948 4.72900 4.73732 4.83093 4.86016 4.89532 4.92357 4.99730 5.02521 5.10393 5.12544 5.28452 5.32084 5.36514 5.46742 5.70833 5.98356 5.98918 6.11413 6.15626 6.19273 6.49070 6.93864 7.20906 8.60897 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.038842 B = 0.001438 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.688223 B =19464.211155 C =19971.047710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 N -0.552 5.552 4 C 0.058 3.942 5 C 0.059 3.941 6 N -0.551 5.551 7 C 0.061 3.939 8 C -0.107 4.107 9 C -0.115 4.115 10 C 0.121 3.879 11 N -0.712 5.712 12 C 0.532 3.468 13 O -0.566 6.566 14 C -0.112 4.112 15 S -0.178 6.178 16 C -0.530 4.530 17 H 0.063 0.937 18 C 0.047 3.953 19 N -0.917 5.917 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.258 1.258 23 H -0.238 1.238 24 C 0.055 3.945 25 C 0.054 3.946 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.036 0.964 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.418 0.582 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.277 0.723 47 H 0.035 0.965 48 H 0.085 0.915 49 H 0.032 0.968 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.350 -34.361 17.432 38.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.077 4.077 3 N -0.278 5.278 4 C -0.070 4.070 5 C -0.069 4.069 6 N -0.276 5.276 7 C -0.067 4.067 8 C -0.145 4.145 9 C -0.153 4.153 10 C -0.003 4.003 11 N -0.366 5.366 12 C 0.318 3.682 13 O -0.445 6.445 14 C -0.262 4.262 15 S 0.048 5.952 16 C -0.677 4.677 17 H 0.081 0.919 18 C -0.158 4.158 19 N -0.555 5.555 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.162 1.162 24 C -0.073 4.073 25 C -0.074 4.074 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.255 0.745 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.103 0.897 49 H 0.050 0.950 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.555 -34.836 15.961 38.403 hybrid contribution 0.849 1.141 0.655 1.566 sum -1.706 -33.695 16.617 37.608 Atomic orbital electron populations 1.21907 0.94295 1.02643 1.02253 1.22119 0.96406 0.88287 1.00930 1.62295 1.04375 1.11615 1.49477 1.22169 0.88024 0.96635 1.00196 1.22157 0.98656 0.92666 0.93459 1.62162 1.04256 1.11554 1.49650 1.22067 1.00469 0.86992 0.97148 1.21411 1.00692 0.93608 0.98809 1.21644 1.01800 0.95001 0.96878 1.21414 0.98867 0.80306 0.99713 1.45770 1.50531 1.11632 1.28684 1.19991 0.80089 0.86720 0.81428 1.90687 1.37030 1.78412 1.38324 1.23280 1.05332 0.94841 1.02787 1.84730 1.65565 1.08953 1.35928 1.22467 1.33652 0.95946 1.15652 0.91909 1.25548 0.96551 0.93803 0.99944 1.70018 1.44135 1.02706 1.38626 0.85872 0.79740 0.81025 0.79765 1.18693 1.18274 1.16156 1.22217 0.88440 0.96553 1.00105 1.22253 0.99119 0.92713 0.93316 0.91056 0.92156 0.92441 0.95056 0.90154 0.94762 0.89258 0.89237 0.94522 0.89885 0.94486 0.91842 0.91472 0.89809 0.90083 0.92551 0.92562 0.74534 0.86766 0.86726 0.91363 0.94675 0.89668 0.94989 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.17 71.98 0.66 -0.63 16 2 C 0.05 0.51 6.00 86.30 0.52 1.02 16 3 N -0.55 -7.07 4.86 -895.73 -4.35 -11.42 16 4 C 0.06 0.68 5.58 86.31 0.48 1.16 16 5 C 0.06 0.69 5.61 86.31 0.48 1.17 16 6 N -0.55 -7.36 4.71 -895.75 -4.22 -11.58 16 7 C 0.06 0.68 4.96 86.30 0.43 1.11 16 8 C -0.11 -1.28 5.15 30.59 0.16 -1.13 16 9 C -0.11 -1.35 5.33 30.60 0.16 -1.19 16 10 C 0.12 2.38 5.67 86.38 0.49 2.87 16 11 N -0.71 -16.27 5.56 -463.05 -2.57 -18.85 16 12 C 0.53 18.27 7.85 87.66 0.69 18.96 16 13 O -0.57 -24.49 15.86 -3.03 -0.05 -24.53 16 14 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 15 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 16 C -0.53 -30.91 10.04 67.95 0.68 -30.23 16 17 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 18 C 0.05 2.76 5.50 84.86 0.47 3.23 16 19 N -0.92 -55.88 13.97 21.65 0.30 -55.58 16 20 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 21 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 24 C 0.05 0.73 5.41 86.31 0.47 1.20 16 25 C 0.05 0.69 4.93 86.31 0.43 1.12 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.50 6.26 -2.39 -0.01 0.49 16 29 H 0.03 0.33 8.08 -2.39 -0.02 0.31 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 34 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.83 8.03 -2.39 -0.02 0.81 16 36 H 0.04 0.42 8.12 -2.39 -0.02 0.40 16 37 H 0.06 0.81 6.49 -2.39 -0.02 0.80 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.42 6.61 8.47 -92.71 -0.79 5.83 16 44 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 45 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 46 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.09 1.08 6.34 -2.39 -0.02 1.06 16 49 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 50 H 0.09 1.03 5.99 -2.39 -0.01 1.01 16 Total: -1.00 -73.68 403.87 -3.41 -77.08 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.08 Total: 13.00 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 6.55 Total: -5.07 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -10.84 Total: -97.43 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.05 Total: -24.53 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -73.68 -3.41 -77.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042596414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.217 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds