Wall clock time and date at job start Tue Mar 31 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65601 * 119.99711 * 2 1 4 4 O 1.42093 * 106.40612 * 311.46017 * 3 2 1 5 5 O 1.42106 * 106.39683 * 178.53974 * 3 2 1 6 6 C 1.76198 * 107.21960 * 65.00258 * 3 2 1 7 7 C 1.38299 * 119.96413 * 270.02048 * 6 3 2 8 8 C 1.38261 * 120.14136 * 180.02562 * 7 6 3 9 9 C 1.38134 * 120.07303 * 359.67569 * 8 7 6 10 10 C 1.38852 * 119.92199 * 0.59904 * 9 8 7 11 11 N 1.39926 * 120.06714 * 179.70041 * 10 9 8 12 12 C 1.34776 * 120.00097 * 214.81171 * 11 10 9 13 13 O 1.21290 * 120.00301 * 355.37355 * 12 11 10 14 14 C 1.50705 * 120.00457 * 175.37689 * 12 11 10 15 15 S 1.80998 * 109.47100 * 179.97438 * 14 12 11 16 16 C 1.76209 * 99.99777 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99721 * 359.97438 * 16 15 14 18 18 C 1.38789 * 119.99836 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00428 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99973 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46805 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47027 * 119.99881 * 20 18 16 23 23 H 1.48493 * 109.47349 * 240.00048 * 20 18 16 24 24 C 1.38090 * 119.96672 * 89.99488 * 6 3 2 25 25 H 1.08995 * 109.47510 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46950 * 299.99834 * 1 2 3 27 27 H 1.09000 * 109.47304 * 59.99585 * 1 2 3 28 28 H 0.96999 * 120.00128 * 179.97438 * 2 1 3 29 29 H 1.07998 * 119.93282 * 359.97438 * 7 6 3 30 30 H 1.08007 * 119.96261 * 179.97438 * 8 7 6 31 31 H 1.07994 * 120.04058 * 180.31407 * 9 8 7 32 32 H 0.96997 * 120.00517 * 34.80871 * 11 10 9 33 33 H 1.08998 * 109.46734 * 59.99709 * 14 12 11 34 34 H 1.08998 * 109.46839 * 299.99630 * 14 12 11 35 35 H 0.97005 * 120.00745 * 180.02562 * 19 18 16 36 36 H 1.08004 * 120.03278 * 0.04839 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7120 2.2330 -1.0215 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2415 1.5254 7 6 0.8579 3.1006 1.6171 8 6 0.5761 3.7364 2.8121 9 6 1.3691 3.5101 3.9203 10 6 2.4574 2.6526 3.8299 11 7 3.2664 2.4261 4.9489 12 6 4.5915 2.2346 4.7948 13 8 5.0704 2.1749 3.6821 14 6 5.4785 2.0946 6.0052 15 16 7.1910 1.8494 5.4730 16 6 7.9833 1.7208 7.0417 17 1 7.4017 1.7985 7.9484 18 6 9.3548 1.5197 7.1120 19 7 10.0637 1.4256 6.0069 20 14 10.1947 1.3827 8.7749 21 1 9.1832 1.5220 9.8532 22 1 10.8589 0.0593 8.8864 23 1 11.2096 2.4586 8.9071 24 6 2.7377 2.0154 2.6280 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.9500 -0.8400 0.0004 29 1 0.2337 3.2758 0.7534 30 1 -0.2677 4.4070 2.8804 31 1 1.1455 4.0031 4.8548 32 1 2.8735 2.4069 5.8355 33 1 5.1553 1.2369 6.5951 34 1 5.4117 2.9983 6.6109 35 1 11.0222 1.2847 6.0560 36 1 3.5811 1.3447 2.5556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049315850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:44 Heat of formation + Delta-G solvation = -74.858577 kcal Electronic energy + Delta-G solvation = -22901.151909 eV Core-core repulsion = 19218.031565 eV Total energy + Delta-G solvation = -3683.120344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.50808 -38.46973 -37.32169 -35.93716 -35.26374 -34.77795 -32.47736 -31.47919 -30.77209 -28.46168 -26.29536 -25.54312 -23.69993 -23.05046 -20.57208 -19.83242 -18.63334 -17.87682 -17.69352 -16.74767 -16.54172 -16.35127 -15.97007 -15.61566 -14.99223 -14.84735 -14.47860 -14.26863 -14.07889 -13.86727 -13.48191 -13.28949 -13.08578 -12.66971 -12.54746 -12.25922 -12.18495 -12.16210 -11.95342 -11.83471 -11.10656 -11.07842 -11.06727 -10.81350 -10.56939 -9.92268 -9.88151 -9.67827 -9.45086 -9.12015 -8.36281 -8.31088 -6.57024 -6.26134 -3.98232 0.22235 0.60639 1.07105 2.68320 2.75988 2.90863 3.18830 3.22850 3.28183 3.34497 3.51168 3.66249 4.14516 4.21718 4.60175 4.69227 4.74909 4.84956 4.89496 5.07603 5.09144 5.21076 5.24326 5.36264 5.42573 5.46468 5.62360 5.72492 5.85885 5.97742 5.99188 6.02191 6.20178 6.64135 6.75929 7.32758 7.55146 8.27163 8.30478 9.19037 10.81201 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.002704 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.818831 B =10351.665279 C =11164.321021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.122 6.122 3 S 2.695 3.305 4 O -0.958 6.958 5 O -0.944 6.944 6 C -0.658 4.658 7 C -0.047 4.047 8 C -0.121 4.121 9 C -0.096 4.096 10 C 0.138 3.862 11 N -0.682 5.682 12 C 0.528 3.472 13 O -0.488 6.488 14 C -0.154 4.154 15 S -0.054 6.054 16 C -0.538 4.538 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.865 5.865 20 Si 0.920 3.080 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.280 1.280 24 C -0.023 4.023 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.420 0.580 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.412 0.588 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.269 0.731 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.298 -0.506 -6.108 26.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.882 5.882 3 S 2.783 3.217 4 O -0.948 6.948 5 O -0.934 6.934 6 C -0.745 4.745 7 C -0.068 4.068 8 C -0.140 4.140 9 C -0.117 4.117 10 C 0.042 3.958 11 N -0.329 5.329 12 C 0.315 3.685 13 O -0.360 6.360 14 C -0.304 4.304 15 S 0.172 5.828 16 C -0.686 4.686 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.501 5.501 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.044 4.044 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.255 0.745 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.248 0.752 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.826 -0.162 -8.655 25.350 hybrid contribution -0.333 -0.182 3.677 3.696 sum -24.159 -0.344 -4.979 24.669 Atomic orbital electron populations 1.21487 0.78642 1.04209 1.01952 1.55376 1.16106 1.24608 1.92075 1.01973 0.73056 0.72796 0.73875 1.93574 1.78976 1.68507 1.53749 1.93678 1.29980 1.82940 1.86785 1.30826 1.06548 1.15889 1.21282 1.20861 0.94154 0.93484 0.98264 1.21042 1.00200 1.00436 0.92358 1.21252 0.95131 0.95450 0.99830 1.17857 0.92701 0.96513 0.88685 1.43706 1.07646 1.73028 1.08556 1.20682 0.81046 0.74988 0.91762 1.90766 1.73532 1.45648 1.26035 1.23544 1.03547 1.05328 0.97980 1.85537 0.91201 1.94482 1.11542 1.22885 0.95367 1.57882 0.92435 0.90790 1.25002 0.96286 0.94493 0.97793 1.70021 1.07335 1.45783 1.26915 0.86098 0.79200 0.77983 0.82093 1.19630 1.20518 1.20535 1.21175 0.96842 0.96020 0.90380 0.89937 0.92198 0.91337 0.74549 0.84305 0.84733 0.84862 0.75210 0.88696 0.88695 0.92117 0.82236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.14 59.85 0.67 1.12 16 2 N -1.12 -9.01 6.19 -16.63 -0.10 -9.11 16 3 S 2.69 32.97 5.74 -107.50 -0.62 32.36 16 4 O -0.96 -13.24 17.00 -57.17 -0.97 -14.21 16 5 O -0.94 -15.71 17.28 -57.17 -0.99 -16.70 16 6 C -0.66 -8.09 5.94 -39.61 -0.24 -8.33 16 7 C -0.05 -0.47 9.52 -39.55 -0.38 -0.85 16 8 C -0.12 -1.05 10.04 -39.61 -0.40 -1.45 16 9 C -0.10 -0.92 9.97 -39.39 -0.39 -1.32 16 10 C 0.14 1.79 6.30 -83.69 -0.53 1.26 16 11 N -0.68 -8.79 5.34 -9.86 -0.05 -8.84 16 12 C 0.53 9.47 7.69 -10.98 -0.08 9.38 16 13 O -0.49 -10.83 13.30 5.55 0.07 -10.75 16 14 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 15 S -0.05 -1.44 20.57 -107.50 -2.21 -3.65 16 16 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 17 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 18 C 0.07 2.08 5.49 -17.44 -0.10 1.98 16 19 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 20 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.02 -0.33 8.17 -39.39 -0.32 -0.65 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 28 H 0.42 2.73 8.96 -34.47 -0.31 2.42 16 29 H 0.14 1.08 7.61 -52.49 -0.40 0.68 16 30 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.41 3.66 8.82 -40.82 -0.36 3.30 16 33 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 36 H 0.16 2.73 5.78 -52.48 -0.30 2.43 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -39.09 343.50 -9.11 -48.19 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.87 Total: 2.87 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.25 Total: -16.25 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.58 Total: -43.13 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -1.89 Total: -41.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 31.54 SS G_CDS: -2.83 Total: 28.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -39.09 -9.11 -48.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049315850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.664 kcal (2) G-P(sol) polarization free energy of solvation -39.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds