Wall clock time and date at job start Tue Mar 31 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47182 * 2 1 4 4 N 1.46499 * 109.46918 * 179.97438 * 3 2 1 5 5 C 1.36525 * 124.77468 * 90.02435 * 4 3 2 6 6 C 1.50707 * 125.38200 * 0.02562 * 5 4 3 7 7 C 1.34322 * 109.23678 * 179.97438 * 5 4 3 8 8 C 1.46965 * 106.37920 * 359.97438 * 7 5 4 9 9 C 1.41843 * 127.08328 * 179.97438 * 8 7 5 10 10 C 1.38077 * 119.99770 * 316.97893 * 9 8 7 11 11 C 1.43204 * 119.99888 * 170.73734 * 10 9 8 12 12 N 8.90528 * 162.39571 * 71.05129 * 2 1 3 13 13 C 1.46948 * 120.00538 * 350.74221 * 10 9 8 14 14 O 1.21680 * 119.99238 * 353.22345 * 13 10 9 15 15 N 1.34767 * 120.00602 * 173.22530 * 13 10 9 16 16 C 1.46503 * 120.00415 * 180.02562 * 15 13 10 17 17 H 1.09004 * 109.46340 * 324.99601 * 16 15 13 18 18 C 1.52994 * 109.47293 * 84.99445 * 16 15 13 19 19 C 1.50697 * 109.46878 * 205.00019 * 16 15 13 20 20 H 1.07994 * 120.00559 * 359.97438 * 19 16 15 21 21 C 1.37883 * 119.99562 * 179.97438 * 19 16 15 22 22 N 1.31519 * 119.99900 * 179.97438 * 21 19 16 23 23 Si 1.86801 * 120.00083 * 359.97438 * 21 19 16 24 24 H 1.48499 * 109.46918 * 90.00201 * 23 21 19 25 25 H 1.48503 * 109.47035 * 209.99978 * 23 21 19 26 26 H 1.48497 * 109.47149 * 330.00082 * 23 21 19 27 27 C 1.34573 * 124.76965 * 270.29601 * 4 3 2 28 28 C 1.50693 * 125.95880 * 0.04129 * 27 4 3 29 29 H 1.09004 * 109.47071 * 300.00249 * 1 2 3 30 30 H 1.09005 * 109.46822 * 59.99910 * 1 2 3 31 31 H 1.08994 * 109.47190 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47448 * 239.99460 * 2 1 3 33 33 H 1.09004 * 109.46866 * 119.99308 * 2 1 3 34 34 H 1.08999 * 109.46994 * 59.99544 * 3 2 1 35 35 H 1.08996 * 109.46540 * 299.99786 * 3 2 1 36 36 H 1.08999 * 109.47011 * 269.99623 * 6 5 4 37 37 H 1.08995 * 109.46950 * 30.00303 * 6 5 4 38 38 H 1.09007 * 109.46766 * 150.00300 * 6 5 4 39 39 H 1.08004 * 126.81248 * 180.02562 * 7 5 4 40 40 H 1.08000 * 120.00310 * 136.98561 * 9 8 7 41 41 H 0.97004 * 119.99706 * 359.97438 * 15 13 10 42 42 H 1.08997 * 109.47283 * 180.02562 * 18 16 15 43 43 H 1.09002 * 109.47400 * 300.00766 * 18 16 15 44 44 H 1.09004 * 109.47300 * 60.00744 * 18 16 15 45 45 H 0.96997 * 119.99715 * 179.97438 * 22 21 19 46 46 H 1.09008 * 109.47454 * 270.15355 * 28 27 4 47 47 H 1.09007 * 109.47151 * 30.14485 * 28 27 4 48 48 H 1.08995 * 109.47696 * 150.15112 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2842 1.4428 -1.1205 6 6 3.7732 1.4437 -2.5383 7 6 5.5782 1.4432 -0.7601 8 6 5.5991 1.4438 0.7094 9 6 6.7428 1.4438 1.5484 10 6 7.8163 0.6276 1.2522 11 6 9.0438 0.7680 1.9764 12 7 10.0182 0.8746 2.5474 13 6 7.6995 -0.3851 0.1939 14 8 6.6236 -0.5893 -0.3365 15 7 8.7838 -1.0877 -0.1892 16 6 8.6674 -2.0970 -1.2448 17 1 7.6953 -2.5853 -1.1748 18 6 8.8025 -1.4233 -2.6117 19 6 9.7582 -3.1236 -1.0806 20 1 10.4676 -3.0332 -0.2713 21 6 9.8507 -4.1785 -1.9638 22 7 10.8030 -5.0742 -1.8208 23 14 8.6233 -4.3353 -3.3632 24 1 9.1378 -3.6153 -4.5558 25 1 8.4321 -5.7700 -3.6955 26 1 7.3244 -3.7453 -2.9509 27 6 4.2720 1.4369 1.1064 28 6 3.7741 1.4289 2.5286 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.6497 0.4163 -2.8806 37 1 2.8130 1.9580 -2.5780 38 1 4.4876 1.9576 -3.1816 39 1 6.4336 1.4438 -1.4195 40 1 6.7738 2.0822 2.4190 41 1 9.6415 -0.9247 0.2334 42 1 8.7154 -2.1741 -3.3971 43 1 8.0135 -0.6806 -2.7304 44 1 9.7745 -0.9350 -2.6817 45 1 10.8678 -5.8165 -2.4419 46 1 3.6508 2.4547 2.8763 47 1 2.8155 0.9120 2.5751 48 1 4.4954 0.9144 3.1634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058423716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:55 Heat of formation + Delta-G solvation = 53.614744 kcal Electronic energy + Delta-G solvation = -28367.116520 eV Core-core repulsion = 24616.588321 eV Total energy + Delta-G solvation = -3750.528200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.33481 -39.11356 -36.45195 -35.67210 -34.87443 -33.58703 -32.43586 -32.31384 -30.76745 -29.61700 -29.16006 -26.42561 -25.22626 -25.01969 -23.11211 -22.11146 -21.52550 -19.96454 -19.85040 -18.70241 -17.92835 -16.56790 -16.22990 -15.69478 -15.45515 -15.25730 -14.62690 -14.50792 -14.28211 -13.99151 -13.74855 -13.58652 -13.29590 -13.21406 -13.13210 -13.04843 -12.76262 -12.72380 -12.48726 -12.40246 -12.37580 -12.22170 -12.14256 -11.98073 -11.89424 -11.65855 -11.55331 -11.29199 -11.18087 -11.13298 -10.76000 -10.13099 -9.79215 -9.57018 -9.15840 -9.05813 -8.69615 -8.10134 -7.72231 -7.45037 -6.14599 -4.16603 0.71714 2.34025 2.85432 2.91672 3.06337 3.26651 3.34966 3.38058 3.42517 4.02544 4.11347 4.27959 4.36318 4.38174 4.49308 4.62155 4.83385 4.86384 4.93017 5.05227 5.09595 5.19999 5.21973 5.28107 5.29097 5.33849 5.52403 5.60907 5.62660 5.66440 5.68031 5.76004 5.85982 5.95540 6.03766 6.09395 6.37116 6.40930 6.46832 6.48939 6.63179 6.91960 7.09852 7.28444 7.31928 7.38471 7.43696 7.59941 7.72418 8.23968 8.62318 8.84467 9.04644 9.46148 10.97926 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.003918 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.247550 B = 7144.152406 C = 8810.777718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.101 3.899 4 N -0.434 5.434 5 C -0.011 4.011 6 C -0.078 4.078 7 C -0.083 4.083 8 C -0.182 4.182 9 C 0.101 3.899 10 C -0.147 4.147 11 C 0.257 3.743 12 N -0.429 5.429 13 C 0.555 3.445 14 O -0.523 6.523 15 N -0.699 5.699 16 C 0.240 3.760 17 H 0.050 0.950 18 C -0.159 4.159 19 C -0.534 4.534 20 H 0.079 0.921 21 C 0.077 3.923 22 N -0.894 5.894 23 Si 0.887 3.113 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.261 1.261 27 C 0.074 3.926 28 C -0.091 4.091 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.391 0.609 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.266 0.734 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.541 16.803 4.038 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C -0.021 4.021 4 N -0.111 5.111 5 C -0.116 4.116 6 C -0.136 4.136 7 C -0.106 4.106 8 C -0.190 4.190 9 C 0.077 3.923 10 C -0.155 4.155 11 C -0.057 4.057 12 N -0.105 5.105 13 C 0.340 3.660 14 O -0.402 6.402 15 N -0.347 5.347 16 C 0.136 3.864 17 H 0.068 0.932 18 C -0.218 4.218 19 C -0.572 4.572 20 H 0.097 0.903 21 C -0.126 4.126 22 N -0.531 5.531 23 Si 0.717 3.283 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.186 1.186 27 C -0.042 4.042 28 C -0.148 4.148 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.225 0.775 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.050 16.591 4.364 27.155 hybrid contribution -0.269 -0.405 -0.816 0.950 sum -21.319 16.186 3.548 27.001 Atomic orbital electron populations 1.21703 0.94676 1.02434 1.01879 1.21922 0.96287 0.95958 1.03862 1.21879 0.77964 0.98319 1.03893 1.43314 1.05496 1.57161 1.05135 1.19934 0.90370 1.13225 0.88098 1.20246 1.00556 1.02407 0.90363 1.21530 0.94593 1.01945 0.92543 1.18153 0.90367 1.16904 0.93583 1.21076 0.89161 0.88848 0.93256 1.18478 0.89985 1.04013 1.02996 1.25662 0.93097 0.93605 0.93318 1.81165 1.10742 1.08778 1.09841 1.17587 0.84996 0.81429 0.82028 1.90853 1.26379 1.67134 1.55801 1.46202 1.10351 1.38842 1.39277 1.19061 0.98909 0.85755 0.82626 0.93202 1.22436 1.00332 0.99752 0.99241 1.21091 1.13607 1.07520 1.15009 0.90342 1.24842 0.95217 0.95092 0.97444 1.69883 1.32186 1.13414 1.37607 0.86857 0.82723 0.76132 0.82634 1.20353 1.22307 1.18586 1.20585 0.89692 1.05278 0.88625 1.20417 1.01868 1.02604 0.89903 0.92538 0.92484 0.92017 0.90886 0.91113 0.89608 0.89401 0.91352 0.92617 0.90539 0.84532 0.85200 0.77542 0.93593 0.94380 0.92941 0.92373 0.90749 0.91548 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.14 -1.09 6.26 -26.73 -0.17 -1.26 16 3 C 0.10 0.74 5.36 -4.04 -0.02 0.72 16 4 N -0.43 -4.72 2.68 -107.51 -0.29 -5.01 16 5 C -0.01 -0.14 6.84 -81.88 -0.56 -0.70 16 6 C -0.08 -0.79 10.04 36.01 0.36 -0.43 16 7 C -0.08 -1.22 7.73 -37.43 -0.29 -1.51 16 8 C -0.18 -2.44 4.75 -104.88 -0.50 -2.94 16 9 C 0.10 1.26 9.31 -38.26 -0.36 0.90 16 10 C -0.15 -2.26 5.87 -104.50 -0.61 -2.87 16 11 C 0.26 4.11 14.20 -22.52 -0.32 3.79 16 12 N -0.43 -7.52 18.53 41.78 0.77 -6.74 16 13 C 0.55 10.58 7.26 -12.74 -0.09 10.49 16 14 O -0.52 -10.83 11.68 5.21 0.06 -10.77 16 15 N -0.70 -14.78 5.02 -56.16 -0.28 -15.06 16 16 C 0.24 5.83 2.15 -69.09 -0.15 5.68 16 17 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 18 C -0.16 -3.57 8.96 37.15 0.33 -3.24 16 19 C -0.53 -14.97 9.31 -34.44 -0.32 -15.29 16 20 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 21 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 22 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 23 Si 0.89 21.99 24.37 -169.99 -4.14 17.85 16 24 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 25 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 27 C 0.07 0.84 6.95 -81.29 -0.56 0.27 16 28 C -0.09 -0.69 9.62 36.00 0.35 -0.34 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.09 0.48 7.51 -51.93 -0.39 0.09 16 35 H 0.09 0.54 6.88 -51.93 -0.36 0.19 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.43 6.92 -51.93 -0.36 0.07 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.14 2.15 7.63 -52.48 -0.40 1.75 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.39 8.04 7.44 -40.82 -0.30 7.73 16 42 H 0.05 1.06 3.28 -51.93 -0.17 0.89 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 47 H 0.07 0.43 7.57 -51.92 -0.39 0.04 16 48 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -33.55 394.27 -7.18 -40.74 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.38 Total: 4.46 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.64 Total: -5.04 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.98 Total: -53.18 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.06 Total: -10.77 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.55 -7.18 -40.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058423716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.352 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds