Wall clock time and date at job start Tue Mar 31 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47170 * 2 1 4 4 C 1.46959 * 111.00155 * 293.80388 * 3 2 1 5 5 C 1.53049 * 109.36443 * 176.80990 * 4 3 2 6 6 N 1.46963 * 109.36486 * 58.40247 * 5 4 3 7 7 C 1.46896 * 110.99948 * 176.81316 * 6 5 4 8 8 C 1.53002 * 109.47033 * 307.66777 * 7 6 5 9 9 H 1.09004 * 109.46869 * 57.74499 * 8 7 6 10 10 C 1.53001 * 109.47264 * 297.73986 * 8 7 6 11 11 C 1.53006 * 109.47044 * 177.73926 * 8 7 6 12 12 N 1.46502 * 109.46914 * 185.00186 * 11 8 7 13 13 C 1.34772 * 119.99702 * 180.02562 * 12 11 8 14 14 O 1.21287 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99984 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47461 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00348 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99817 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00186 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99578 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47079 * 90.00340 * 21 19 17 23 23 H 1.48501 * 109.47145 * 209.99858 * 21 19 17 24 24 H 1.48498 * 109.47290 * 330.00030 * 21 19 17 25 25 C 1.46959 * 110.87922 * 300.67887 * 6 5 4 26 26 C 1.46963 * 111.00089 * 170.00412 * 3 2 1 27 27 H 1.09000 * 109.47646 * 59.99680 * 1 2 3 28 28 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47026 * 299.99695 * 1 2 3 30 30 H 1.09002 * 109.46567 * 240.00576 * 2 1 3 31 31 H 1.09000 * 109.47646 * 120.00320 * 2 1 3 32 32 H 1.09001 * 109.48947 * 296.77739 * 4 3 2 33 33 H 1.08997 * 109.48503 * 56.84377 * 4 3 2 34 34 H 1.08999 * 109.49312 * 298.43408 * 5 4 3 35 35 H 1.08999 * 109.48777 * 178.37022 * 5 4 3 36 36 H 1.09004 * 109.47569 * 67.67089 * 7 6 5 37 37 H 1.08998 * 109.46841 * 187.67369 * 7 6 5 38 38 H 1.08999 * 109.47157 * 300.00243 * 10 8 7 39 39 H 1.09002 * 109.46856 * 60.00077 * 10 8 7 40 40 H 1.09003 * 109.47145 * 179.97438 * 10 8 7 41 41 H 1.08998 * 109.46844 * 305.00347 * 11 8 7 42 42 H 1.09005 * 109.46731 * 65.00193 * 11 8 7 43 43 H 0.97001 * 119.99805 * 359.97438 * 12 11 8 44 44 H 1.09002 * 109.47202 * 300.00069 * 15 13 12 45 45 H 1.09000 * 109.47514 * 59.99795 * 15 13 12 46 46 H 0.97001 * 119.99301 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.48947 * 299.35339 * 25 6 5 48 48 H 1.08993 * 109.48880 * 179.29026 * 25 6 5 49 49 H 1.08997 * 109.48321 * 303.15367 * 26 3 2 50 50 H 1.08999 * 109.48762 * 63.21897 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6731 2.0661 -1.2553 5 6 2.1294 3.5252 -1.1836 6 7 3.5789 3.5714 -0.9454 7 6 4.0685 4.9564 -0.9453 8 6 3.6069 5.6605 -2.2228 9 1 2.5192 5.6250 -2.2844 10 6 4.2100 4.9563 -3.4398 11 6 4.0688 7.1190 -2.1966 12 7 3.5264 7.8240 -3.3607 13 6 3.8039 9.1295 -3.5473 14 8 4.5030 9.7207 -2.7518 15 6 3.2464 9.8546 -4.7450 16 16 3.7927 11.5799 -4.7140 17 6 3.0184 12.1726 -6.1816 18 1 2.4222 11.5042 -6.7852 19 6 3.1745 13.4983 -6.5619 20 7 3.9015 14.3127 -5.8263 21 14 2.3542 14.1263 -8.1181 22 1 0.9993 14.6389 -7.7913 23 1 3.1705 15.2216 -8.7006 24 1 2.2406 13.0179 -9.0998 25 6 3.9254 2.8902 0.3099 26 6 3.4691 1.4311 0.2381 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.1715 1.5697 -2.0879 33 1 0.5938 2.0294 -1.4029 34 1 1.6107 4.0289 -0.3679 35 1 1.8994 4.0248 -2.1246 36 1 3.6716 5.4821 -0.0769 37 1 5.1577 4.9566 -0.9037 38 1 5.2977 4.9918 -3.3781 39 1 3.8809 3.9173 -3.4585 40 1 3.8808 5.4577 -4.3500 41 1 3.7125 7.5966 -1.2840 42 1 5.1579 7.1556 -2.2246 43 1 2.9681 7.3509 -3.9974 44 1 3.6028 9.3766 -5.6574 45 1 2.1573 9.8182 -4.7173 46 1 4.0109 15.2390 -6.0924 47 1 3.4270 3.3866 1.1425 48 1 5.0047 2.9269 0.4576 49 1 3.6990 0.9316 1.1792 50 1 3.9878 0.9275 -0.5775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058942487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:14 Heat of formation + Delta-G solvation = -35.273309 kcal Electronic energy + Delta-G solvation = -25582.694951 eV Core-core repulsion = 21963.756228 eV Total energy + Delta-G solvation = -3618.938724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.04110 -39.15951 -37.32938 -35.24527 -32.86969 -32.41668 -31.34105 -30.98444 -29.29476 -27.42762 -26.22188 -25.43840 -24.30652 -23.89798 -22.05101 -20.63758 -20.31947 -19.76410 -17.82479 -17.05964 -16.29989 -16.03241 -15.73014 -15.51487 -15.28115 -15.11306 -15.02142 -14.79617 -14.69179 -14.42030 -13.87886 -13.75552 -13.32777 -13.13239 -12.91101 -12.66368 -12.58415 -12.51834 -12.31614 -12.14709 -11.86563 -11.66606 -11.64896 -11.42049 -11.21834 -11.13272 -11.05523 -11.01314 -10.94835 -10.74802 -10.68080 -9.80356 -9.37675 -9.05988 -8.85561 -8.83044 -8.63010 -8.22014 -6.48612 -6.20631 -3.90998 3.03759 3.13486 3.23023 3.28074 3.31769 3.41714 3.49698 3.79898 4.21527 4.42137 4.42879 4.54336 4.64404 4.68737 4.76970 4.77608 4.97361 5.00468 5.01884 5.05731 5.07311 5.14495 5.18417 5.22002 5.31682 5.34892 5.37740 5.47286 5.49574 5.52379 5.56232 5.60423 5.65493 5.70277 5.77914 5.80416 5.82309 5.91691 6.04486 6.14918 6.15951 6.51721 6.54716 6.64857 6.73215 6.75272 7.60582 7.74290 8.36272 8.64913 9.24666 10.86815 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.028850 B = 0.001717 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.307143 B =16307.285747 C =16921.274884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.055 3.945 5 C 0.050 3.950 6 N -0.535 5.535 7 C 0.063 3.937 8 C -0.104 4.104 9 H 0.078 0.922 10 C -0.139 4.139 11 C 0.127 3.873 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.057 3.943 26 C 0.058 3.942 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.043 0.957 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 -30.767 10.902 32.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.073 4.073 5 C -0.078 4.078 6 N -0.260 5.260 7 C -0.065 4.065 8 C -0.123 4.123 9 H 0.097 0.903 10 C -0.196 4.196 11 C 0.002 3.998 12 N -0.392 5.392 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.071 4.071 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.967 -29.599 12.271 32.179 hybrid contribution -1.592 -0.506 -2.185 2.750 sum -4.559 -30.105 10.086 32.075 Atomic orbital electron populations 1.21804 0.94765 1.01593 1.02564 1.22054 0.96212 0.88689 1.00731 1.62203 1.13881 1.15812 1.34857 1.22211 1.00647 0.94105 0.90307 1.22278 0.87778 0.96095 1.01653 1.62181 1.13805 1.15756 1.34275 1.22055 1.00819 0.87299 0.96307 1.21476 1.01073 0.93778 0.95994 0.90350 1.21746 1.01067 1.00656 0.96167 1.21244 0.99083 0.90366 0.89100 1.45977 1.54714 1.10806 1.27661 1.20296 0.80079 0.81107 0.86806 1.90702 1.36844 1.66281 1.45482 1.23528 1.04007 1.04851 0.98011 1.85397 1.67255 0.96531 1.34219 1.22874 1.36711 0.98399 1.10404 0.90936 1.24993 0.95188 0.95696 0.97714 1.70023 1.36993 1.05582 1.37686 0.86167 0.79125 0.78503 0.81695 1.20284 1.20749 1.19708 1.22140 1.00598 0.93812 0.90575 1.22138 0.87421 0.96456 1.00982 0.92606 0.92283 0.91839 0.94895 0.90860 0.94030 0.90117 0.93948 0.89569 0.94341 0.90101 0.92532 0.91596 0.92981 0.91817 0.91503 0.76875 0.89251 0.89283 0.92197 0.93892 0.90169 0.90390 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.85 37.16 0.37 -0.41 16 2 C 0.05 0.30 5.68 -3.83 -0.02 0.27 16 3 N -0.54 -3.86 4.71 -234.47 -1.10 -4.96 16 4 C 0.06 0.39 5.41 -3.77 -0.02 0.37 16 5 C 0.05 0.37 5.12 -3.76 -0.02 0.35 16 6 N -0.54 -4.09 4.15 -234.46 -0.97 -5.07 16 7 C 0.06 0.50 4.55 -3.82 -0.02 0.48 16 8 C -0.10 -0.86 1.95 -90.61 -0.18 -1.04 16 9 H 0.08 0.62 6.11 -51.93 -0.32 0.31 16 10 C -0.14 -1.14 8.86 37.16 0.33 -0.81 16 11 C 0.13 1.46 5.07 -4.04 -0.02 1.44 16 12 N -0.74 -9.83 5.28 -60.29 -0.32 -10.15 16 13 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 14 O -0.52 -11.96 15.86 5.55 0.09 -11.88 16 15 C -0.15 -3.12 6.16 36.00 0.22 -2.89 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.06 0.40 5.62 -3.77 -0.02 0.38 16 26 C 0.06 0.39 5.61 -3.76 -0.02 0.36 16 27 H 0.05 0.29 6.49 -51.93 -0.34 -0.04 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.19 8.12 -51.93 -0.42 -0.23 16 31 H 0.07 0.38 8.03 -51.93 -0.42 -0.03 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.51 6.34 -51.93 -0.33 0.18 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.60 5.87 -51.93 -0.30 0.30 16 36 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.53 7.62 -51.93 -0.40 0.14 16 40 H 0.05 0.43 7.18 -51.93 -0.37 0.06 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.40 4.18 7.65 -40.82 -0.31 3.86 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 50 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -34.00 402.96 -11.12 -45.11 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -9.09 Total: -1.55 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 0.71 Total: -4.62 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -1.66 Total: -45.73 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.00 -11.12 -45.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058942487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.839 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds