Wall clock time and date at job start Tue Mar 31 2020 05:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46505 * 120.00276 * 2 1 4 4 C 1.52998 * 109.47185 * 270.00524 * 3 2 1 5 5 N 1.46903 * 109.46609 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00058 * 66.04845 * 5 4 3 7 7 C 1.46903 * 110.99829 * 190.00074 * 5 4 3 8 8 C 1.53114 * 109.52485 * 179.97438 * 7 5 4 9 9 C 1.53037 * 109.31211 * 182.42092 * 8 7 5 10 10 N 1.46929 * 109.47910 * 59.15772 * 9 8 7 11 11 C 1.46900 * 110.98461 * 174.18240 * 10 9 8 12 12 C 1.46850 * 111.22205 * 298.28247 * 10 9 8 13 13 C 1.53037 * 109.52028 * 61.74456 * 12 10 9 14 14 C 1.34778 * 120.00011 * 180.02562 * 2 1 3 15 15 O 1.21290 * 119.99720 * 179.97438 * 14 2 1 16 16 C 1.50697 * 120.00089 * 359.97438 * 14 2 1 17 17 S 1.81003 * 109.47383 * 180.02562 * 16 14 2 18 18 C 1.76196 * 99.99993 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00149 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99937 * 180.02562 * 18 17 16 21 21 N 1.31637 * 119.99982 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00328 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47235 * 89.99611 * 22 20 18 24 24 H 1.48500 * 109.47307 * 209.99672 * 22 20 18 25 25 H 1.48498 * 109.47063 * 330.00096 * 22 20 18 26 26 H 1.09001 * 109.47509 * 89.99681 * 1 2 3 27 27 H 1.09005 * 109.47232 * 209.99651 * 1 2 3 28 28 H 1.09005 * 109.47275 * 329.99207 * 1 2 3 29 29 H 1.08998 * 109.47073 * 150.00008 * 3 2 1 30 30 H 1.09007 * 109.46800 * 30.00708 * 3 2 1 31 31 H 1.09000 * 109.47231 * 60.00211 * 4 3 2 32 32 H 1.08998 * 109.47311 * 299.99765 * 4 3 2 33 33 H 1.09007 * 109.46699 * 183.95222 * 6 5 4 34 34 H 1.09000 * 109.46947 * 303.94875 * 6 5 4 35 35 H 1.09000 * 109.47083 * 63.95071 * 6 5 4 36 36 H 1.09006 * 109.57134 * 300.16046 * 7 5 4 37 37 H 1.09002 * 109.50377 * 302.38217 * 8 7 5 38 38 H 1.09003 * 109.50316 * 62.46212 * 8 7 5 39 39 H 1.08994 * 109.46612 * 179.21753 * 9 8 7 40 40 H 1.09007 * 109.46083 * 299.18512 * 9 8 7 41 41 H 1.09001 * 109.47132 * 184.23155 * 11 10 9 42 42 H 1.08998 * 109.47131 * 304.22754 * 11 10 9 43 43 H 1.08995 * 109.47646 * 64.22924 * 11 10 9 44 44 H 1.08997 * 109.46198 * 301.72747 * 12 10 9 45 45 H 1.08999 * 109.45191 * 181.75464 * 12 10 9 46 46 H 1.08997 * 109.50150 * 180.88044 * 13 12 10 47 47 H 1.08997 * 109.53578 * 60.77667 * 13 12 10 48 48 H 1.09002 * 109.47029 * 300.00189 * 16 14 2 49 49 H 1.08999 * 109.47338 * 59.99892 * 16 14 2 50 50 H 0.96994 * 120.00238 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1865 2.9830 -1.4423 6 6 4.5351 2.8127 -0.8855 7 6 3.2433 3.5580 -2.7929 8 6 4.0135 4.8808 -2.7539 9 6 4.0179 5.5053 -4.1510 10 7 2.6345 5.7355 -4.5891 11 6 2.6009 6.4599 -5.8667 12 6 1.8887 4.4738 -4.6799 13 6 1.8216 3.8189 -3.2983 14 6 2.1388 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 16 2.5615 -3.8481 -0.0005 18 6 1.4414 -5.2082 0.0003 19 1 0.3762 -5.0305 0.0010 20 6 1.9281 -6.5080 0.0010 21 7 3.2266 -6.7247 0.0006 22 14 0.7407 -7.9500 0.0025 23 1 0.4254 -8.3332 -1.3972 24 1 1.3624 -9.1024 0.7031 25 1 -0.5096 -7.5609 0.7028 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 3.1499 1.1384 0.5138 30 1 1.6084 2.0284 0.5140 31 1 1.5000 1.8409 -1.9562 32 1 3.0414 0.9509 -1.9564 33 1 5.0311 3.7819 -0.8321 34 1 4.4639 2.3854 0.1148 35 1 5.1109 2.1445 -1.5258 36 1 3.7465 2.8627 -3.4649 37 1 3.5317 5.5619 -2.0523 38 1 5.0392 4.6954 -2.4349 39 1 4.5537 6.4540 -4.1231 40 1 4.5121 4.8297 -4.8493 41 1 1.5672 6.6831 -6.1307 42 1 3.1607 7.3903 -5.7717 43 1 3.0499 5.8437 -6.6457 44 1 2.3928 3.8031 -5.3756 45 1 0.8783 4.6742 -5.0362 46 1 1.2815 2.8749 -3.3689 47 1 1.3052 4.4828 -2.6050 48 1 0.7590 -2.5302 0.8897 49 1 0.7583 -2.5299 -0.8902 50 1 3.5667 -7.6330 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058969114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:43 Heat of formation + Delta-G solvation = -20.538032 kcal Electronic energy + Delta-G solvation = -26234.182181 eV Core-core repulsion = 22615.882427 eV Total energy + Delta-G solvation = -3618.299754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96613 -39.32224 -37.21611 -35.26239 -32.67576 -32.43261 -31.45975 -30.30888 -28.28610 -27.21041 -26.53375 -25.54151 -24.97280 -23.34895 -22.63559 -21.19796 -19.90235 -19.15252 -17.68211 -16.91583 -16.37976 -15.98898 -15.62292 -15.47951 -15.37605 -14.96462 -14.81150 -14.76056 -14.19302 -14.08761 -13.83396 -13.42679 -13.17894 -13.04611 -12.92737 -12.76514 -12.73633 -12.52848 -12.34920 -12.09560 -11.98113 -11.74517 -11.67860 -11.44873 -11.41694 -11.06982 -11.02851 -10.89166 -10.78675 -10.73360 -10.41584 -9.80852 -9.36703 -9.07068 -8.72212 -8.61911 -8.42028 -8.22884 -6.50589 -6.22075 -3.92668 2.90031 3.05961 3.21717 3.24841 3.29559 3.53057 3.56074 3.85668 4.19956 4.40221 4.52452 4.74685 4.76872 4.83351 4.94853 4.97997 5.06252 5.12787 5.14659 5.15229 5.16558 5.24011 5.25667 5.32179 5.36121 5.43058 5.46566 5.47897 5.50711 5.55306 5.58817 5.62860 5.70189 5.71473 5.84084 5.89337 5.90032 5.91175 6.02315 6.10516 6.13584 6.59373 6.67945 6.69498 6.91643 6.93747 7.54454 7.59257 8.34741 8.56473 9.23148 10.85344 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.002070 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.446913 B =13523.693404 C =13712.765955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.624 5.624 3 C 0.122 3.878 4 C 0.036 3.964 5 N -0.533 5.533 6 C 0.017 3.983 7 C 0.085 3.915 8 C -0.110 4.110 9 C 0.056 3.944 10 N -0.543 5.543 11 C 0.024 3.976 12 C 0.057 3.943 13 C -0.110 4.110 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.150 4.150 17 S -0.063 6.063 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.032 0.968 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 26.394 -7.236 27.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.361 5.361 3 C -0.001 4.001 4 C -0.093 4.093 5 N -0.257 5.257 6 C -0.131 4.131 7 C -0.024 4.024 8 C -0.148 4.148 9 C -0.072 4.072 10 N -0.267 5.267 11 C -0.124 4.124 12 C -0.072 4.072 13 C -0.148 4.148 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.300 4.300 17 S 0.164 5.836 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.452 26.865 -6.565 27.764 hybrid contribution -1.400 -2.055 -1.259 2.787 sum -3.852 24.810 -7.824 26.298 Atomic orbital electron populations 1.21780 0.79584 1.03191 1.01689 1.47847 1.06904 1.05672 1.75653 1.21340 0.98257 0.84475 0.96031 1.22550 0.98843 0.89758 0.98147 1.62014 1.16771 1.25485 1.21465 1.22503 0.89042 1.01109 1.00414 1.21660 0.96341 0.95366 0.89000 1.21689 1.00206 0.96188 0.96737 1.22114 0.88873 1.00094 0.96109 1.61973 1.13919 1.21413 1.29445 1.22352 1.02280 0.98246 0.89499 1.22097 0.98544 0.89599 0.96933 1.21688 0.96362 1.00655 0.96135 1.20366 0.87950 0.84619 0.75056 1.90689 1.13754 1.86834 1.47737 1.23556 1.04524 0.97250 1.04707 1.85390 1.08143 0.93387 1.96702 1.22857 0.94306 0.92204 1.58904 0.90940 1.24998 0.95682 0.98389 0.94560 1.70020 1.11739 1.21647 1.46886 0.86166 0.80271 0.80715 0.78339 1.20286 1.20747 1.19679 0.92896 0.90652 0.91241 0.89868 0.90106 0.90433 0.94150 0.91150 0.90809 0.95378 0.94554 0.89994 0.91270 0.90497 0.95036 0.91305 0.91365 0.95765 0.94998 0.90461 0.91311 0.89981 0.89220 0.89323 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.28 59.84 0.62 1.46 16 2 N -0.62 -8.88 2.87 -181.57 -0.52 -9.40 16 3 C 0.12 1.54 5.38 -4.04 -0.02 1.51 16 4 C 0.04 0.43 5.10 -3.82 -0.02 0.41 16 5 N -0.53 -5.64 4.63 -234.73 -1.09 -6.73 16 6 C 0.02 0.18 8.91 60.06 0.54 0.72 16 7 C 0.08 0.81 2.01 -67.59 -0.14 0.68 16 8 C -0.11 -0.91 4.93 -26.65 -0.13 -1.04 16 9 C 0.06 0.43 5.47 -3.79 -0.02 0.41 16 10 N -0.54 -4.39 4.91 -242.89 -1.19 -5.58 16 11 C 0.02 0.16 9.59 60.06 0.58 0.73 16 12 C 0.06 0.46 5.47 -3.83 -0.02 0.43 16 13 C -0.11 -0.96 5.10 -26.65 -0.14 -1.10 16 14 C 0.53 10.20 7.69 -10.99 -0.08 10.11 16 15 O -0.52 -11.82 15.44 5.55 0.09 -11.73 16 16 C -0.15 -3.06 4.71 36.00 0.17 -2.89 16 17 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 18 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 28 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 29 H 0.08 1.20 5.75 -51.93 -0.30 0.90 16 30 H 0.08 0.85 7.89 -51.92 -0.41 0.44 16 31 H 0.08 0.84 5.89 -51.93 -0.31 0.54 16 32 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.07 0.62 6.30 -51.93 -0.33 0.29 16 34 H 0.07 0.81 6.30 -51.93 -0.33 0.49 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.54 6.50 -51.93 -0.34 0.20 16 39 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 40 H 0.03 0.25 8.14 -51.92 -0.42 -0.17 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 43 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 46 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 1.70 7.40 -51.91 -0.38 1.31 16 49 H 0.09 1.69 8.11 -51.92 -0.42 1.26 16 50 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -33.75 398.81 -10.60 -44.36 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.92 Total: -2.35 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 1.52 Total: -1.54 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -2.07 Total: -47.22 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.75 -10.60 -44.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058969114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.818 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds