Wall clock time and date at job start Tue Mar 31 2020 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 120.00173 * 2 1 4 4 H 1.48504 * 109.46817 * 240.00307 * 3 2 1 5 5 H 1.48503 * 109.46806 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47032 * 120.00323 * 3 2 1 7 7 C 1.38952 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00314 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99905 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99942 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00178 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47292 * 180.02562 * 12 10 9 14 14 C 1.46956 * 110.99677 * 170.00200 * 13 12 10 15 15 C 1.53057 * 109.36162 * 183.18894 * 14 13 12 16 16 N 1.46954 * 109.36263 * 301.59585 * 15 14 13 17 17 C 1.46908 * 110.99966 * 183.18687 * 16 15 14 18 18 C 1.50699 * 109.46767 * 66.20188 * 17 16 15 19 19 C 1.32564 * 119.99740 * 125.00116 * 18 17 16 20 20 C 1.47815 * 120.00045 * 179.97438 * 19 18 17 21 21 C 1.39531 * 120.14019 * 359.72792 * 20 19 18 22 22 C 1.37975 * 119.85645 * 179.67704 * 21 20 19 23 23 C 1.38341 * 120.14322 * 0.61858 * 22 21 20 24 24 C 1.38346 * 120.28287 * 359.67437 * 23 22 21 25 25 C 1.37973 * 120.14265 * 0.02562 * 24 23 22 26 26 C 1.46956 * 110.88042 * 59.32532 * 16 15 14 27 27 C 1.46954 * 110.99900 * 293.79852 * 13 12 10 28 28 H 0.96997 * 119.99590 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99873 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46825 * 60.00356 * 12 10 9 31 31 H 1.09002 * 109.47091 * 300.00396 * 12 10 9 32 32 H 1.09002 * 109.48908 * 303.15220 * 14 13 12 33 33 H 1.09002 * 109.49369 * 63.22349 * 14 13 12 34 34 H 1.08997 * 109.48880 * 61.56749 * 15 14 13 35 35 H 1.09004 * 109.48844 * 181.62946 * 15 14 13 36 36 H 1.08997 * 109.46863 * 186.20099 * 17 16 15 37 37 H 1.09003 * 109.47129 * 306.20540 * 17 16 15 38 38 H 1.08000 * 120.00430 * 304.99759 * 18 17 16 39 39 H 1.07999 * 120.00389 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.07216 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.93092 * 180.31538 * 22 21 20 42 42 H 1.07999 * 119.86505 * 179.69915 * 23 22 21 43 43 H 1.08001 * 119.93373 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.07268 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.48908 * 180.71202 * 26 16 15 46 46 H 1.09002 * 109.49369 * 60.64073 * 26 16 15 47 47 H 1.08997 * 109.49355 * 296.78047 * 27 13 12 48 48 H 1.09003 * 109.49032 * 56.82589 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 1.5135 -7.2576 0.2404 15 6 2.5490 -8.3824 0.3126 16 7 3.3120 -8.4235 -0.9427 17 6 4.2667 -9.5401 -0.9422 18 6 3.5131 -10.8451 -0.9416 19 6 3.7520 -11.7488 -1.8817 20 6 3.0133 -13.0292 -1.8808 21 6 2.0680 -13.2920 -0.8887 22 6 1.3771 -14.4862 -0.8974 23 6 1.6290 -15.4274 -1.8795 24 6 2.5693 -15.1755 -2.8625 25 6 3.2626 -13.9826 -2.8686 26 6 3.9968 -7.1454 -1.1815 27 6 2.9613 -6.0206 -1.2536 28 1 -0.4849 0.8401 0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6168 -4.9209 -0.8887 31 1 0.6173 -4.9205 0.8913 32 1 0.9659 -7.2066 1.1815 33 1 0.8179 -7.4555 -0.5752 34 1 3.2281 -8.1986 1.1451 35 1 2.0411 -9.3354 0.4607 36 1 4.8933 -9.4827 -1.8322 37 1 4.8933 -9.4820 -0.0522 38 1 2.7785 -11.0443 -0.1754 39 1 4.4869 -11.5500 -2.6477 40 1 1.8741 -12.5602 -0.1185 41 1 0.6415 -14.6888 -0.1330 42 1 1.0890 -16.3628 -1.8792 43 1 2.7612 -15.9141 -3.6267 44 1 3.9962 -13.7870 -3.6367 45 1 4.5444 -7.1964 -2.1226 46 1 4.6924 -6.9475 -0.3659 47 1 2.2822 -6.2044 -2.0862 48 1 3.4690 -5.0675 -1.4020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066472163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:22 Heat of formation + Delta-G solvation = 22.904622 kcal Electronic energy + Delta-G solvation = -26569.109394 eV Core-core repulsion = 22817.249503 eV Total energy + Delta-G solvation = -3751.859891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.60229 -39.28965 -37.95389 -35.88269 -34.18149 -33.70331 -31.30358 -31.24402 -30.78284 -30.56893 -28.40391 -26.04284 -24.54797 -23.71578 -23.19402 -22.90527 -21.86042 -19.72295 -19.41006 -19.15053 -17.84182 -17.45691 -16.20603 -15.93236 -15.69828 -15.37828 -14.93293 -14.82198 -14.65781 -14.63987 -14.26423 -14.06674 -13.73846 -13.65912 -13.53973 -13.26329 -13.18947 -13.02267 -12.35016 -12.18639 -11.84607 -11.73134 -11.49114 -11.42453 -11.32980 -11.18217 -11.07623 -10.96830 -10.69878 -10.60144 -10.42829 -10.35362 -10.19431 -9.44735 -9.26490 -8.53445 -8.42611 -8.21614 -7.95551 -7.79736 -6.39855 -3.80640 0.63856 1.09813 2.23330 3.21148 3.26730 3.31051 3.61705 3.91700 3.96165 4.03727 4.27166 4.38320 4.49193 4.65096 4.75904 4.83888 4.95225 5.04671 5.07319 5.12101 5.22063 5.25215 5.26705 5.30056 5.40340 5.48925 5.56166 5.61222 5.65827 5.70107 5.72342 5.81898 5.93372 5.95537 5.99619 6.02055 6.12778 6.20060 6.25356 6.31611 6.37664 6.44585 6.55740 6.68538 6.96178 7.01250 7.35126 7.45925 7.56680 8.08323 8.64045 9.19912 9.56731 10.08715 10.77831 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.036075 B = 0.001696 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.983084 B =16508.487412 C =16888.498665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.047 3.953 13 N -0.517 5.517 14 C 0.056 3.944 15 C 0.058 3.942 16 N -0.537 5.537 17 C 0.081 3.919 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.048 4.048 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.113 4.113 26 C 0.061 3.939 27 C 0.056 3.944 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.031 0.969 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -27.821 -3.226 28.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.242 5.242 14 C -0.073 4.073 15 C -0.070 4.070 16 N -0.262 5.262 17 C -0.046 4.046 18 C -0.140 4.140 19 C -0.143 4.143 20 C -0.048 4.048 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.131 4.131 26 C -0.066 4.066 27 C -0.072 4.072 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.049 0.951 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.979 -27.625 -3.222 27.971 hybrid contribution -0.376 0.813 0.022 0.896 sum 2.603 -26.812 -3.200 27.127 Atomic orbital electron populations 1.69605 1.05925 1.28217 1.50598 1.25255 0.95623 0.99684 0.97358 0.85922 0.78754 0.80515 0.79037 1.19943 1.21002 1.19926 1.19648 0.93322 0.82244 1.47669 0.87984 1.41863 1.09187 1.04578 1.64456 1.19750 0.88398 0.84554 0.84318 1.90473 1.13729 1.86915 1.55186 1.21832 0.93941 0.91174 1.01510 1.61754 1.25345 1.01496 1.35626 1.22167 0.95229 0.89025 1.00851 1.22167 0.96197 0.98150 0.90478 1.62276 1.25995 1.03202 1.34720 1.21153 0.93355 0.88681 1.01453 1.23286 0.98608 0.94104 0.97989 1.21602 1.00373 0.92888 0.99414 1.19099 0.96303 0.94188 0.95186 1.21338 0.96267 0.97345 0.98517 1.21102 0.99646 0.93988 0.98832 1.21204 0.98495 0.99422 0.95300 1.21097 0.96688 0.97202 0.98786 1.21279 0.99899 0.93578 0.98347 1.22168 0.95924 0.87668 1.00876 1.22323 0.95718 0.99906 0.89285 0.91853 0.77493 0.93431 0.89415 0.90480 0.94355 0.93863 0.90666 0.90200 0.93534 0.86875 0.86335 0.85828 0.86013 0.86209 0.86065 0.85902 0.90597 0.93647 0.95117 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C 0.44 10.53 7.48 -10.99 -0.08 10.44 16 11 O -0.58 -15.52 13.92 5.55 0.08 -15.44 16 12 C 0.05 0.85 5.45 -4.98 -0.03 0.83 16 13 N -0.52 -8.88 4.45 -235.90 -1.05 -9.93 16 14 C 0.06 0.76 5.61 -3.76 -0.02 0.73 16 15 C 0.06 0.70 5.44 -3.77 -0.02 0.68 16 16 N -0.54 -6.62 4.70 -235.90 -1.11 -7.73 16 17 C 0.08 0.80 5.41 -4.97 -0.03 0.78 16 18 C -0.12 -1.10 8.61 -36.22 -0.31 -1.42 16 19 C -0.12 -1.09 9.52 -37.57 -0.36 -1.45 16 20 C -0.05 -0.43 5.87 -105.01 -0.62 -1.05 16 21 C -0.12 -1.01 9.40 -39.20 -0.37 -1.38 16 22 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 23 C -0.13 -0.92 10.04 -39.50 -0.40 -1.32 16 24 C -0.12 -0.89 10.03 -39.64 -0.40 -1.28 16 25 C -0.11 -0.92 9.79 -39.19 -0.38 -1.31 16 26 C 0.06 0.86 5.61 -3.76 -0.02 0.84 16 27 C 0.06 0.94 5.26 -3.77 -0.02 0.92 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 30 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 32 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.75 6.53 -51.93 -0.34 0.41 16 36 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 37 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 38 H 0.11 0.97 4.87 -52.49 -0.26 0.71 16 39 H 0.12 0.92 7.87 -52.49 -0.41 0.50 16 40 H 0.12 0.93 6.17 -52.49 -0.32 0.61 16 41 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.11 2.15 5.85 -51.93 -0.30 1.85 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -31.45 388.55 -11.62 -43.07 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.35 Total: 9.66 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -3.69 Total: -3.29 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -1.49 Total: -55.94 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.08 Total: -15.44 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.45 -11.62 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.980 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds